data_1BVB # _model_server_result.job_id wBe1cggDQ8o_fw8kM0ET8A _model_server_result.datetime_utc '2025-02-27 01:13:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":220}' # _entry.id 1BVB # _exptl.entry_id 1BVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BVB _cell.length_a 68.2 _cell.length_b 68.2 _cell.length_c 168.833 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 11 A CYS 11 1_555 E CAB HEM . A HEM 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale2 A SG CYS 14 A CYS 14 1_555 E CAC HEM . A HEM 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? covale ? covale3 A SG CYS 60 A CYS 60 1_555 F CAB HEM . A HEM 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? covale ? covale4 A SG CYS 63 A CYS 63 1_555 F CAC HEM . A HEM 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? covale ? covale5 A SG CYS 88 A CYS 88 1_555 G CAB HEM . A HEM 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale6 A SG CYS 91 A CYS 91 1_555 G CAC HEM . A HEM 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? covale ? covale7 A SG CYS 134 A CYS 134 1_555 H CAB HEM . A HEM 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale8 A SG CYS 137 A CYS 137 1_555 H CAC HEM . A HEM 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 E FE HEM . A HEM 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A NE2 HIS 27 A HIS 27 1_555 H FE HEM . A HEM 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 A NE2 HIS 64 A HIS 64 1_555 F FE HEM . A HEM 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc4 A NE2 HIS 92 A HIS 92 1_555 G FE HEM . A HEM 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc5 A ND1 HIS 102 A HIS 102 1_555 E FE HEM . A HEM 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc6 A NE2 HIS 138 A HIS 138 1_555 H FE HEM . A HEM 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc7 A NE2 HIS 179 A HIS 179 1_555 G FE HEM . A HEM 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 342 n n P O2 PO4 sing 343 n n P O3 PO4 sing 344 n n P O4 PO4 sing 345 n n # _atom_sites.entry_id 1BVB _atom_sites.fract_transf_matrix[1][1] 0.014663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 218 218 PO4 PO4 . C 2 PO4 A 1 219 219 PO4 PO4 . D 2 PO4 A 1 220 220 PO4 PO4 . E 3 HEM A 1 213 213 HEM HEM . F 3 HEM A 1 214 214 HEM HEM . G 3 HEM A 1 215 215 HEM HEM . H 3 HEM A 1 216 216 HEM HEM . I 4 HOH A 1 221 1 HOH HOH . I 4 HOH A 2 222 2 HOH HOH . I 4 HOH A 3 223 3 HOH HOH . I 4 HOH A 4 224 4 HOH HOH . I 4 HOH A 5 225 5 HOH HOH . I 4 HOH A 6 226 6 HOH HOH . I 4 HOH A 7 227 7 HOH HOH . I 4 HOH A 8 228 8 HOH HOH . I 4 HOH A 9 229 9 HOH HOH . I 4 HOH A 10 230 10 HOH HOH . I 4 HOH A 11 231 11 HOH HOH . I 4 HOH A 12 232 12 HOH HOH . I 4 HOH A 13 233 13 HOH HOH . I 4 HOH A 14 234 14 HOH HOH . I 4 HOH A 15 235 15 HOH HOH . I 4 HOH A 16 236 16 HOH HOH . I 4 HOH A 17 237 17 HOH HOH . I 4 HOH A 18 238 18 HOH HOH . I 4 HOH A 19 239 19 HOH HOH . I 4 HOH A 20 240 20 HOH HOH . I 4 HOH A 21 241 21 HOH HOH . I 4 HOH A 22 242 22 HOH HOH . I 4 HOH A 23 243 23 HOH HOH . I 4 HOH A 24 244 24 HOH HOH . I 4 HOH A 25 245 25 HOH HOH . I 4 HOH A 26 246 26 HOH HOH . I 4 HOH A 27 247 27 HOH HOH . I 4 HOH A 28 248 28 HOH HOH . I 4 HOH A 29 249 29 HOH HOH . I 4 HOH A 30 250 30 HOH HOH . I 4 HOH A 31 251 31 HOH HOH . I 4 HOH A 32 252 32 HOH HOH . I 4 HOH A 33 253 33 HOH HOH . I 4 HOH A 34 254 34 HOH HOH . I 4 HOH A 35 255 35 HOH HOH . I 4 HOH A 36 256 36 HOH HOH . I 4 HOH A 37 257 37 HOH HOH . I 4 HOH A 38 258 38 HOH HOH . I 4 HOH A 39 259 39 HOH HOH . I 4 HOH A 40 260 40 HOH HOH . I 4 HOH A 41 261 41 HOH HOH . I 4 HOH A 42 262 42 HOH HOH . I 4 HOH A 43 263 43 HOH HOH . I 4 HOH A 44 264 44 HOH HOH . I 4 HOH A 45 265 45 HOH HOH . I 4 HOH A 46 266 46 HOH HOH . I 4 HOH A 47 267 47 HOH HOH . I 4 HOH A 48 268 48 HOH HOH . I 4 HOH A 49 269 49 HOH HOH . I 4 HOH A 50 270 50 HOH HOH . I 4 HOH A 51 271 51 HOH HOH . I 4 HOH A 52 272 52 HOH HOH . I 4 HOH A 53 273 53 HOH HOH . I 4 HOH A 54 274 54 HOH HOH . I 4 HOH A 55 275 55 HOH HOH . I 4 HOH A 56 276 56 HOH HOH . I 4 HOH A 57 277 57 HOH HOH . I 4 HOH A 58 278 58 HOH HOH . I 4 HOH A 59 279 59 HOH HOH . I 4 HOH A 60 280 60 HOH HOH . I 4 HOH A 61 281 61 HOH HOH . I 4 HOH A 62 282 62 HOH HOH . I 4 HOH A 63 283 63 HOH HOH . I 4 HOH A 64 284 64 HOH HOH . I 4 HOH A 65 285 65 HOH HOH . I 4 HOH A 66 286 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 49.191 80.534 91.482 0.4 22.64 ? P PO4 220 A 1 HETATM 2 O O1 PO4 . . . D 2 50.244 79.916 92.419 0.4 20.09 ? O1 PO4 220 A 1 HETATM 3 O O2 PO4 . . . D 2 47.79 80.372 92.115 0.4 21.24 ? O2 PO4 220 A 1 HETATM 4 O O3 PO4 . . . D 2 49.482 82.031 91.286 0.4 21.48 ? O3 PO4 220 A 1 HETATM 5 O O4 PO4 . . . D 2 49.227 79.822 90.107 0.4 20.66 ? O4 PO4 220 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #