data_1BVG
#
_model_server_result.job_id            4MvhVypoxnQDSxSCcehhkA 
_model_server_result.datetime_utc      '2025-04-25 21:21:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bvg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":100}' 
#
_entry.id    1BVG 
#
_exptl.entry_id    1BVG 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              566.687 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BVG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BVG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C35 H38 N2 O5' 
_chem_comp.formula_weight    566.687 
_chem_comp.id                DMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DMP323(INHIBITOR OF DUPONT MERCK)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 DMP sing 83 n n 
C1 N7 DMP sing 84 n n 
C1 O1 DMP doub 85 n n 
C3 C4 DMP sing 86 n n 
C3 C30 DMP sing 87 n n 
C3 N2 DMP sing 88 n n 
C3 H3 DMP sing 89 n n 
C4 C5 DMP sing 90 n n 
C4 O4 DMP sing 91 n n 
C4 H4 DMP sing 92 n n 
C5 C6 DMP sing 93 n n 
C5 O5 DMP sing 94 n n 
C5 H5 DMP sing 95 n n 
C6 C60 DMP sing 96 n n 
C6 N7 DMP sing 97 n n 
C6 H6 DMP sing 98 n n 
C20 C21 DMP sing 99 n n 
C20 N2 DMP sing 100 n n 
C20 H201 DMP sing 101 n n 
C20 H202 DMP sing 102 n n 
C21 C22 DMP doub 103 n y 
C21 C26 DMP sing 104 n y 
C22 C23 DMP sing 105 n y 
C22 H22 DMP sing 106 n n 
C23 C24 DMP doub 107 n y 
C23 H23 DMP sing 108 n n 
C24 C25 DMP sing 109 n y 
C24 C27 DMP sing 110 n n 
C25 C26 DMP doub 111 n y 
C25 H25 DMP sing 112 n n 
C26 H26 DMP sing 113 n n 
C27 O27 DMP sing 114 n n 
C27 H271 DMP sing 115 n n 
C27 H272 DMP sing 116 n n 
C30 C31 DMP sing 117 n n 
C30 H301 DMP sing 118 n n 
C30 H302 DMP sing 119 n n 
C31 C32 DMP doub 120 n y 
C31 C36 DMP sing 121 n y 
C32 C33 DMP sing 122 n y 
C32 H32 DMP sing 123 n n 
C33 C34 DMP doub 124 n y 
C33 H33 DMP sing 125 n n 
C34 C35 DMP sing 126 n y 
C34 H34 DMP sing 127 n n 
C35 C36 DMP doub 128 n y 
C35 H35 DMP sing 129 n n 
C36 H36 DMP sing 130 n n 
C60 C61 DMP sing 131 n n 
C60 H601 DMP sing 132 n n 
C60 H602 DMP sing 133 n n 
C61 C62 DMP doub 134 n y 
C61 C66 DMP sing 135 n y 
C62 C63 DMP sing 136 n y 
C62 H62 DMP sing 137 n n 
C63 C64 DMP doub 138 n y 
C63 H63 DMP sing 139 n n 
C64 C65 DMP sing 140 n y 
C64 H64 DMP sing 141 n n 
C65 C66 DMP doub 142 n y 
C65 H65 DMP sing 143 n n 
C66 H66 DMP sing 144 n n 
C70 C71 DMP sing 145 n n 
C70 N7 DMP sing 146 n n 
C70 H701 DMP sing 147 n n 
C70 H702 DMP sing 148 n n 
C71 C72 DMP doub 149 n y 
C71 C76 DMP sing 150 n y 
C72 C73 DMP sing 151 n y 
C72 H72 DMP sing 152 n n 
C73 C74 DMP doub 153 n y 
C73 H73 DMP sing 154 n n 
C74 C75 DMP sing 155 n y 
C74 C77 DMP sing 156 n n 
C75 C76 DMP doub 157 n y 
C75 H75 DMP sing 158 n n 
C76 H76 DMP sing 159 n n 
C77 O77 DMP sing 160 n n 
C77 H771 DMP sing 161 n n 
C77 H772 DMP sing 162 n n 
O4 HO4 DMP sing 163 n n 
O5 HO5 DMP sing 164 n n 
O27 HO27 DMP sing 165 n n 
O77 HO77 DMP sing 166 n n 
#
_atom_sites.entry_id                     1BVG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           DMP 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      100 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       DMP 
_pdbx_nonpoly_scheme.auth_mon_id      DMP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DMP . . . C 2 1.287 -5.837 -5.464 1 0.38 ? C1 DMP 100 B 1 
HETATM 2 C C3 DMP . . . C 2 1.251 -3.527 -6.458 1 0.4 ? C3 DMP 100 B 1 
HETATM 3 C C4 DMP . . . C 2 0.787 -2.658 -5.288 1 0.39 ? C4 DMP 100 B 1 
HETATM 4 C C5 DMP . . . C 2 1.431 -2.989 -3.963 1 0.38 ? C5 DMP 100 B 1 
HETATM 5 C C6 DMP . . . C 2 1.102 -4.379 -3.421 1 0.37 ? C6 DMP 100 B 1 
HETATM 6 C C20 DMP . . . C 2 0.174 -5.552 -7.522 1 0.41 ? C20 DMP 100 B 1 
HETATM 7 C C21 DMP . . . C 2 -1.001 -4.819 -8.03 1 0.43 ? C21 DMP 100 B 1 
HETATM 8 C C22 DMP . . . C 2 -1.388 -4.945 -9.353 1 0.5 ? C22 DMP 100 B 1 
HETATM 9 C C23 DMP . . . C 2 -2.492 -4.251 -9.821 1 0.54 ? C23 DMP 100 B 1 
HETATM 10 C C24 DMP . . . C 2 -3.207 -3.431 -8.963 1 0.5 ? C24 DMP 100 B 1 
HETATM 11 C C25 DMP . . . C 2 -2.82 -3.306 -7.643 1 0.45 ? C25 DMP 100 B 1 
HETATM 12 C C26 DMP . . . C 2 -1.718 -3.998 -7.176 1 0.42 ? C26 DMP 100 B 1 
HETATM 13 C C27 DMP . . . C 2 -4.403 -2.676 -9.462 1 0.56 ? C27 DMP 100 B 1 
HETATM 14 C C30 DMP . . . C 2 2.73 -3.475 -6.831 1 0.42 ? C30 DMP 100 B 1 
HETATM 15 C C31 DMP . . . C 2 2.947 -3.761 -8.294 1 0.46 ? C31 DMP 100 B 1 
HETATM 16 C C32 DMP . . . C 2 3.926 -4.664 -8.666 1 0.49 ? C32 DMP 100 B 1 
HETATM 17 C C33 DMP . . . C 2 4.131 -4.953 -9.998 1 0.53 ? C33 DMP 100 B 1 
HETATM 18 C C34 DMP . . . C 2 3.358 -4.339 -10.963 1 0.55 ? C34 DMP 100 B 1 
HETATM 19 C C35 DMP . . . C 2 2.377 -3.432 -10.596 1 0.55 ? C35 DMP 100 B 1 
HETATM 20 C C36 DMP . . . C 2 2.169 -3.144 -9.258 1 0.5 ? C36 DMP 100 B 1 
HETATM 21 C C60 DMP . . . C 2 -0.361 -4.687 -3.114 1 0.38 ? C60 DMP 100 B 1 
HETATM 22 C C61 DMP . . . C 2 -0.498 -5.706 -2.013 1 0.41 ? C61 DMP 100 B 1 
HETATM 23 C C62 DMP . . . C 2 -1.345 -6.783 -2.192 1 0.42 ? C62 DMP 100 B 1 
HETATM 24 C C63 DMP . . . C 2 -1.474 -7.737 -1.206 1 0.46 ? C63 DMP 100 B 1 
HETATM 25 C C64 DMP . . . C 2 -0.757 -7.616 -0.034 1 0.49 ? C64 DMP 100 B 1 
HETATM 26 C C65 DMP . . . C 2 0.093 -6.537 0.154 1 0.48 ? C65 DMP 100 B 1 
HETATM 27 C C66 DMP . . . C 2 0.224 -5.581 -0.839 1 0.44 ? C66 DMP 100 B 1 
HETATM 28 C C70 DMP . . . C 2 2.43 -6.53 -3.526 1 0.39 ? C70 DMP 100 B 1 
HETATM 29 C C71 DMP . . . C 2 3.539 -6.035 -2.689 1 0.41 ? C71 DMP 100 B 1 
HETATM 30 C C72 DMP . . . C 2 3.982 -6.77 -1.601 1 0.43 ? C72 DMP 100 B 1 
HETATM 31 C C73 DMP . . . C 2 5.028 -6.295 -0.826 1 0.46 ? C73 DMP 100 B 1 
HETATM 32 C C74 DMP . . . C 2 5.628 -5.086 -1.139 1 0.46 ? C74 DMP 100 B 1 
HETATM 33 C C75 DMP . . . C 2 5.185 -4.353 -2.224 1 0.44 ? C75 DMP 100 B 1 
HETATM 34 C C76 DMP . . . C 2 4.142 -4.826 -2.999 1 0.42 ? C76 DMP 100 B 1 
HETATM 35 C C77 DMP . . . C 2 6.761 -4.568 -0.303 1 0.49 ? C77 DMP 100 B 1 
HETATM 36 N N2 DMP . . . C 2 0.871 -4.957 -6.385 1 0.39 ? N2 DMP 100 B 1 
HETATM 37 N N7 DMP . . . C 2 1.633 -5.516 -4.21 1 0.37 ? N7 DMP 100 B 1 
HETATM 38 O O1 DMP . . . C 2 1.358 -7.013 -5.792 1 0.38 ? O1 DMP 100 B 1 
HETATM 39 O O4 DMP . . . C 2 1.044 -1.347 -5.643 1 0.41 ? O4 DMP 100 B 1 
HETATM 40 O O5 DMP . . . C 2 1.044 -2.084 -2.992 1 0.38 ? O5 DMP 100 B 1 
HETATM 41 O O27 DMP . . . C 2 -4.031 -1.843 -10.55 1 0.9 ? O27 DMP 100 B 1 
HETATM 42 O O77 DMP . . . C 2 6.275 -4.144 0.962 1 0.55 ? O77 DMP 100 B 1 
HETATM 43 H H3 DMP . . . C 2 0.72 -3.137 -7.317 1 0.42 ? H3 DMP 100 B 1 
HETATM 44 H H4 DMP . . . C 2 -0.28 -2.78 -5.181 1 0.39 ? H4 DMP 100 B 1 
HETATM 45 H H5 DMP . . . C 2 2.502 -2.923 -4.084 1 0.38 ? H5 DMP 100 B 1 
HETATM 46 H H6 DMP . . . C 2 1.616 -4.431 -2.469 1 0.38 ? H6 DMP 100 B 1 
HETATM 47 H H201 DMP . . . C 2 -0.137 -6.549 -7.236 1 0.4 ? H201 DMP 100 B 1 
HETATM 48 H H202 DMP . . . C 2 0.878 -5.644 -8.333 1 0.43 ? H202 DMP 100 B 1 
HETATM 49 H H22 DMP . . . C 2 -0.832 -5.583 -10.02 1 0.55 ? H22 DMP 100 B 1 
HETATM 50 H H23 DMP . . . C 2 -2.795 -4.349 -10.853 1 0.62 ? H23 DMP 100 B 1 
HETATM 51 H H25 DMP . . . C 2 -3.378 -2.666 -6.976 1 0.47 ? H25 DMP 100 B 1 
HETATM 52 H H26 DMP . . . C 2 -1.417 -3.898 -6.143 1 0.42 ? H26 DMP 100 B 1 
HETATM 53 H H271 DMP . . . C 2 -4.801 -2.074 -8.655 1 0.48 ? H271 DMP 100 B 1 
HETATM 54 H H272 DMP . . . C 2 -5.157 -3.372 -9.791 1 0.85 ? H272 DMP 100 B 1 
HETATM 55 H H301 DMP . . . C 2 3.256 -4.213 -6.245 1 0.42 ? H301 DMP 100 B 1 
HETATM 56 H H302 DMP . . . C 2 3.12 -2.495 -6.601 1 0.43 ? H302 DMP 100 B 1 
HETATM 57 H H32 DMP . . . C 2 4.53 -5.142 -7.913 1 0.5 ? H32 DMP 100 B 1 
HETATM 58 H H33 DMP . . . C 2 4.896 -5.658 -10.286 1 0.57 ? H33 DMP 100 B 1 
HETATM 59 H H34 DMP . . . C 2 3.519 -4.57 -12 1 0.6 ? H34 DMP 100 B 1 
HETATM 60 H H35 DMP . . . C 2 1.773 -2.952 -11.352 1 0.6 ? H35 DMP 100 B 1 
HETATM 61 H H36 DMP . . . C 2 1.406 -2.438 -8.968 1 0.52 ? H36 DMP 100 B 1 
HETATM 62 H H601 DMP . . . C 2 -0.825 -5.072 -4.01 1 0.39 ? H601 DMP 100 B 1 
HETATM 63 H H602 DMP . . . C 2 -0.862 -3.778 -2.818 1 0.39 ? H602 DMP 100 B 1 
HETATM 64 H H62 DMP . . . C 2 -1.906 -6.878 -3.105 1 0.43 ? H62 DMP 100 B 1 
HETATM 65 H H63 DMP . . . C 2 -2.136 -8.577 -1.351 1 0.49 ? H63 DMP 100 B 1 
HETATM 66 H H64 DMP . . . C 2 -0.858 -8.363 0.729 1 0.53 ? H64 DMP 100 B 1 
HETATM 67 H H65 DMP . . . C 2 0.654 -6.444 1.072 1 0.53 ? H65 DMP 100 B 1 
HETATM 68 H H66 DMP . . . C 2 0.884 -4.739 -0.696 1 0.45 ? H66 DMP 100 B 1 
HETATM 69 H H701 DMP . . . C 2 2.834 -7.197 -4.277 1 0.4 ? H701 DMP 100 B 1 
HETATM 70 H H702 DMP . . . C 2 1.771 -7.102 -2.893 1 0.4 ? H702 DMP 100 B 1 
HETATM 71 H H72 DMP . . . C 2 3.515 -7.71 -1.358 1 0.44 ? H72 DMP 100 B 1 
HETATM 72 H H73 DMP . . . C 2 5.374 -6.866 0.022 1 0.49 ? H73 DMP 100 B 1 
HETATM 73 H H75 DMP . . . C 2 5.654 -3.411 -2.467 1 0.46 ? H75 DMP 100 B 1 
HETATM 74 H H76 DMP . . . C 2 3.798 -4.251 -3.847 1 0.42 ? H76 DMP 100 B 1 
HETATM 75 H H771 DMP . . . C 2 7.227 -3.737 -0.817 1 0.43 ? H771 DMP 100 B 1 
HETATM 76 H H772 DMP . . . C 2 7.489 -5.349 -0.159 1 0.64 ? H772 DMP 100 B 1 
HETATM 77 H HO4 DMP . . . C 2 0.642 -1.187 -6.5 1 0.99 ? HO4 DMP 100 B 1 
HETATM 78 H HO5 DMP . . . C 2 1.693 -2.111 -2.286 1 0.63 ? HO5 DMP 100 B 1 
HETATM 79 H HO27 DMP . . . C 2 -4.674 -1.966 -11.252 1 1.17 ? HO27 DMP 100 B 1 
HETATM 80 H HO77 DMP . . . C 2 6.464 -4.836 1.6 1 1.05 ? HO77 DMP 100 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           80 
#