data_1BVI # _model_server_result.job_id kzVyGd9EF4PtPBh6zN5K0Q _model_server_result.datetime_utc '2024-10-14 18:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bvi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":251}' # _entry.id 1BVI # _exptl.entry_id 1BVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BVI _cell.length_a 59.34 _cell.length_b 60.59 _cell.length_c 100.93 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? disulf ? disulf3 B SG CYS 2 B CYS 2 1_555 B SG CYS 10 B CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? disulf ? disulf4 B SG CYS 6 B CYS 6 1_555 B SG CYS 103 B CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? disulf ? disulf5 C SG CYS 2 C CYS 2 1_555 C SG CYS 10 C CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? disulf ? disulf6 C SG CYS 6 C CYS 6 1_555 C SG CYS 103 C CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? disulf ? disulf7 D SG CYS 2 D CYS 2 1_555 D SG CYS 10 D CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? disulf ? disulf8 D SG CYS 6 D CYS 6 1_555 D SG CYS 103 D CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc1 C O TYR 45 C TYR 45 4_566 J CA CA . D CA 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 C O GLY 47 C GLY 47 3_646 G CA CA . C CA 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 C OD1 ASP 49 C ASP 49 3_646 G CA CA . C CA 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc4 G CA CA . C CA 250 1_555 N O HOH . C HOH 288 3_646 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc5 G CA CA . C CA 250 1_555 D O TYR 45 D TYR 45 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 G CA CA . C CA 250 1_555 O O HOH . D HOH 277 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc7 G CA CA . C CA 250 1_555 O O HOH . D HOH 278 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc8 N O HOH . C HOH 283 4_566 J CA CA . D CA 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc9 D O GLY 47 D GLY 47 1_555 J CA CA . D CA 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc10 D OD1 ASP 49 D ASP 49 1_555 J CA CA . D CA 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc11 J CA CA . D CA 251 1_555 O O HOH . D HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BVI _atom_sites.fract_transf_matrix[1][1] 0.016852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016504 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2GP A 1 252 107 2GP 2GP . F 2 2GP B 1 253 108 2GP 2GP . G 3 CA C 1 250 105 CA CA . H 2 2GP C 1 254 109 2GP 2GP . I 2 2GP C 1 255 110 2GP 2GP . J 3 CA D 1 251 106 CA CA . K 2 2GP D 1 256 111 2GP 2GP . L 4 HOH A 1 253 8 HOH HOH . L 4 HOH A 2 254 11 HOH HOH . L 4 HOH A 3 255 12 HOH HOH . L 4 HOH A 4 256 19 HOH HOH . L 4 HOH A 5 257 20 HOH HOH . L 4 HOH A 6 258 24 HOH HOH . L 4 HOH A 7 259 26 HOH HOH . L 4 HOH A 8 260 33 HOH HOH . L 4 HOH A 9 261 44 HOH HOH . L 4 HOH A 10 262 46 HOH HOH . L 4 HOH A 11 263 50 HOH HOH . L 4 HOH A 12 264 55 HOH HOH . L 4 HOH A 13 265 59 HOH HOH . L 4 HOH A 14 266 65 HOH HOH . L 4 HOH A 15 267 67 HOH HOH . L 4 HOH A 16 268 69 HOH HOH . L 4 HOH A 17 269 79 HOH HOH . L 4 HOH A 18 270 87 HOH HOH . L 4 HOH A 19 271 96 HOH HOH . L 4 HOH A 20 272 123 HOH HOH . L 4 HOH A 21 273 124 HOH HOH . L 4 HOH A 22 274 129 HOH HOH . L 4 HOH A 23 275 136 HOH HOH . L 4 HOH A 24 276 140 HOH HOH . L 4 HOH A 25 277 149 HOH HOH . L 4 HOH A 26 278 150 HOH HOH . L 4 HOH A 27 279 157 HOH HOH . L 4 HOH A 28 280 161 HOH HOH . L 4 HOH A 29 281 164 HOH HOH . L 4 HOH A 30 282 182 HOH HOH . L 4 HOH A 31 283 189 HOH HOH . L 4 HOH A 32 284 195 HOH HOH . L 4 HOH A 33 285 197 HOH HOH . L 4 HOH A 34 286 198 HOH HOH . L 4 HOH A 35 287 199 HOH HOH . L 4 HOH A 36 288 203 HOH HOH . L 4 HOH A 37 289 204 HOH HOH . L 4 HOH A 38 290 207 HOH HOH . L 4 HOH A 39 291 208 HOH HOH . L 4 HOH A 40 292 212 HOH HOH . L 4 HOH A 41 293 215 HOH HOH . L 4 HOH A 42 294 216 HOH HOH . L 4 HOH A 43 295 222 HOH HOH . L 4 HOH A 44 296 226 HOH HOH . L 4 HOH A 45 297 228 HOH HOH . L 4 HOH A 46 298 237 HOH HOH . L 4 HOH A 47 299 238 HOH HOH . M 4 HOH B 1 254 14 HOH HOH . M 4 HOH B 2 255 15 HOH HOH . M 4 HOH B 3 256 17 HOH HOH . M 4 HOH B 4 257 21 HOH HOH . M 4 HOH B 5 258 22 HOH HOH . M 4 HOH B 6 259 29 HOH HOH . M 4 HOH B 7 260 31 HOH HOH . M 4 HOH B 8 261 32 HOH HOH . M 4 HOH B 9 262 34 HOH HOH . M 4 HOH B 10 263 40 HOH HOH . M 4 HOH B 11 264 41 HOH HOH . M 4 HOH B 12 265 43 HOH HOH . M 4 HOH B 13 266 52 HOH HOH . M 4 HOH B 14 267 57 HOH HOH . M 4 HOH B 15 268 60 HOH HOH . M 4 HOH B 16 269 66 HOH HOH . M 4 HOH B 17 270 68 HOH HOH . M 4 HOH B 18 271 70 HOH HOH . M 4 HOH B 19 272 71 HOH HOH . M 4 HOH B 20 273 74 HOH HOH . M 4 HOH B 21 274 76 HOH HOH . M 4 HOH B 22 275 80 HOH HOH . M 4 HOH B 23 276 89 HOH HOH . M 4 HOH B 24 277 91 HOH HOH . M 4 HOH B 25 278 92 HOH HOH . M 4 HOH B 26 279 95 HOH HOH . M 4 HOH B 27 280 97 HOH HOH . M 4 HOH B 28 281 98 HOH HOH . M 4 HOH B 29 282 104 HOH HOH . M 4 HOH B 30 283 107 HOH HOH . M 4 HOH B 31 284 113 HOH HOH . M 4 HOH B 32 285 120 HOH HOH . M 4 HOH B 33 286 121 HOH HOH . M 4 HOH B 34 287 122 HOH HOH . M 4 HOH B 35 288 127 HOH HOH . M 4 HOH B 36 289 130 HOH HOH . M 4 HOH B 37 290 131 HOH HOH . M 4 HOH B 38 291 141 HOH HOH . M 4 HOH B 39 292 142 HOH HOH . M 4 HOH B 40 293 143 HOH HOH . M 4 HOH B 41 294 147 HOH HOH . M 4 HOH B 42 295 168 HOH HOH . M 4 HOH B 43 296 170 HOH HOH . M 4 HOH B 44 297 172 HOH HOH . M 4 HOH B 45 298 177 HOH HOH . M 4 HOH B 46 299 183 HOH HOH . M 4 HOH B 47 300 185 HOH HOH . M 4 HOH B 48 301 188 HOH HOH . M 4 HOH B 49 302 191 HOH HOH . M 4 HOH B 50 303 192 HOH HOH . M 4 HOH B 51 304 193 HOH HOH . M 4 HOH B 52 305 201 HOH HOH . M 4 HOH B 53 306 205 HOH HOH . M 4 HOH B 54 307 209 HOH HOH . M 4 HOH B 55 308 210 HOH HOH . M 4 HOH B 56 309 214 HOH HOH . M 4 HOH B 57 310 217 HOH HOH . M 4 HOH B 58 311 227 HOH HOH . M 4 HOH B 59 312 230 HOH HOH . M 4 HOH B 60 313 240 HOH HOH . M 4 HOH B 61 314 242 HOH HOH . N 4 HOH C 1 256 3 HOH HOH . N 4 HOH C 2 257 5 HOH HOH . N 4 HOH C 3 258 7 HOH HOH . N 4 HOH C 4 259 16 HOH HOH . N 4 HOH C 5 260 23 HOH HOH . N 4 HOH C 6 261 25 HOH HOH . N 4 HOH C 7 262 27 HOH HOH . N 4 HOH C 8 263 28 HOH HOH . N 4 HOH C 9 264 30 HOH HOH . N 4 HOH C 10 265 42 HOH HOH . N 4 HOH C 11 266 45 HOH HOH . N 4 HOH C 12 267 47 HOH HOH . N 4 HOH C 13 268 51 HOH HOH . N 4 HOH C 14 269 64 HOH HOH . N 4 HOH C 15 270 72 HOH HOH . N 4 HOH C 16 271 73 HOH HOH . N 4 HOH C 17 272 75 HOH HOH . N 4 HOH C 18 273 77 HOH HOH . N 4 HOH C 19 274 84 HOH HOH . N 4 HOH C 20 275 86 HOH HOH . N 4 HOH C 21 276 102 HOH HOH . N 4 HOH C 22 277 103 HOH HOH . N 4 HOH C 23 278 105 HOH HOH . N 4 HOH C 24 279 106 HOH HOH . N 4 HOH C 25 280 111 HOH HOH . N 4 HOH C 26 281 116 HOH HOH . N 4 HOH C 27 282 117 HOH HOH . N 4 HOH C 28 283 119 HOH HOH . N 4 HOH C 29 284 125 HOH HOH . N 4 HOH C 30 285 132 HOH HOH . N 4 HOH C 31 286 133 HOH HOH . N 4 HOH C 32 287 134 HOH HOH . N 4 HOH C 33 288 139 HOH HOH . N 4 HOH C 34 289 144 HOH HOH . N 4 HOH C 35 290 145 HOH HOH . N 4 HOH C 36 291 152 HOH HOH . N 4 HOH C 37 292 153 HOH HOH . N 4 HOH C 38 293 154 HOH HOH . N 4 HOH C 39 294 156 HOH HOH . N 4 HOH C 40 295 162 HOH HOH . N 4 HOH C 41 296 163 HOH HOH . N 4 HOH C 42 297 166 HOH HOH . N 4 HOH C 43 298 171 HOH HOH . N 4 HOH C 44 299 173 HOH HOH . N 4 HOH C 45 300 174 HOH HOH . N 4 HOH C 46 301 178 HOH HOH . N 4 HOH C 47 302 180 HOH HOH . N 4 HOH C 48 303 181 HOH HOH . N 4 HOH C 49 304 184 HOH HOH . N 4 HOH C 50 305 186 HOH HOH . N 4 HOH C 51 306 190 HOH HOH . N 4 HOH C 52 307 211 HOH HOH . N 4 HOH C 53 308 219 HOH HOH . N 4 HOH C 54 309 221 HOH HOH . N 4 HOH C 55 310 223 HOH HOH . N 4 HOH C 56 311 224 HOH HOH . N 4 HOH C 57 312 225 HOH HOH . N 4 HOH C 58 313 232 HOH HOH . N 4 HOH C 59 314 233 HOH HOH . N 4 HOH C 60 315 235 HOH HOH . N 4 HOH C 61 316 236 HOH HOH . O 4 HOH D 1 257 1 HOH HOH . O 4 HOH D 2 258 2 HOH HOH . O 4 HOH D 3 259 4 HOH HOH . O 4 HOH D 4 260 6 HOH HOH . O 4 HOH D 5 261 9 HOH HOH . O 4 HOH D 6 262 10 HOH HOH . O 4 HOH D 7 263 13 HOH HOH . O 4 HOH D 8 264 18 HOH HOH . O 4 HOH D 9 265 35 HOH HOH . O 4 HOH D 10 266 36 HOH HOH . O 4 HOH D 11 267 37 HOH HOH . O 4 HOH D 12 268 38 HOH HOH . O 4 HOH D 13 269 39 HOH HOH . O 4 HOH D 14 270 48 HOH HOH . O 4 HOH D 15 271 49 HOH HOH . O 4 HOH D 16 272 53 HOH HOH . O 4 HOH D 17 273 54 HOH HOH . O 4 HOH D 18 274 56 HOH HOH . O 4 HOH D 19 275 58 HOH HOH . O 4 HOH D 20 276 61 HOH HOH . O 4 HOH D 21 277 62 HOH HOH . O 4 HOH D 22 278 63 HOH HOH . O 4 HOH D 23 279 78 HOH HOH . O 4 HOH D 24 280 81 HOH HOH . O 4 HOH D 25 281 82 HOH HOH . O 4 HOH D 26 282 83 HOH HOH . O 4 HOH D 27 283 85 HOH HOH . O 4 HOH D 28 284 88 HOH HOH . O 4 HOH D 29 285 90 HOH HOH . O 4 HOH D 30 286 93 HOH HOH . O 4 HOH D 31 287 94 HOH HOH . O 4 HOH D 32 288 99 HOH HOH . O 4 HOH D 33 289 100 HOH HOH . O 4 HOH D 34 290 101 HOH HOH . O 4 HOH D 35 291 108 HOH HOH . O 4 HOH D 36 292 109 HOH HOH . O 4 HOH D 37 293 110 HOH HOH . O 4 HOH D 38 294 112 HOH HOH . O 4 HOH D 39 295 114 HOH HOH . O 4 HOH D 40 296 115 HOH HOH . O 4 HOH D 41 297 118 HOH HOH . O 4 HOH D 42 298 126 HOH HOH . O 4 HOH D 43 299 128 HOH HOH . O 4 HOH D 44 300 135 HOH HOH . O 4 HOH D 45 301 137 HOH HOH . O 4 HOH D 46 302 138 HOH HOH . O 4 HOH D 47 303 146 HOH HOH . O 4 HOH D 48 304 148 HOH HOH . O 4 HOH D 49 305 151 HOH HOH . O 4 HOH D 50 306 155 HOH HOH . O 4 HOH D 51 307 158 HOH HOH . O 4 HOH D 52 308 159 HOH HOH . O 4 HOH D 53 309 160 HOH HOH . O 4 HOH D 54 310 165 HOH HOH . O 4 HOH D 55 311 167 HOH HOH . O 4 HOH D 56 312 169 HOH HOH . O 4 HOH D 57 313 175 HOH HOH . O 4 HOH D 58 314 176 HOH HOH . O 4 HOH D 59 315 179 HOH HOH . O 4 HOH D 60 316 187 HOH HOH . O 4 HOH D 61 317 194 HOH HOH . O 4 HOH D 62 318 196 HOH HOH . O 4 HOH D 63 319 200 HOH HOH . O 4 HOH D 64 320 202 HOH HOH . O 4 HOH D 65 321 206 HOH HOH . O 4 HOH D 66 322 213 HOH HOH . O 4 HOH D 67 323 218 HOH HOH . O 4 HOH D 68 324 220 HOH HOH . O 4 HOH D 69 325 229 HOH HOH . O 4 HOH D 70 326 231 HOH HOH . O 4 HOH D 71 327 234 HOH HOH . O 4 HOH D 72 328 239 HOH HOH . O 4 HOH D 73 329 241 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 53.165 _atom_site.Cartn_y 45.231 _atom_site.Cartn_z 28.3 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 251 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #