data_1BWF # _model_server_result.job_id HDLslCCzR2TL6lDfKoRWCg _model_server_result.datetime_utc '2024-11-22 02:28:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 1BWF # _exptl.entry_id 1BWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 541.189 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHODIFLUOROMETHYLPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BWF _cell.length_a 99.767 _cell.length_b 200.293 _cell.length_c 114.738 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2B ATF . Y ATF 601 1_555 C MG MG . Y MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc2 D O3G ATF . Y ATF 601 1_555 C MG MG . Y MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc3 G O1G ATF . O ATF 601 1_555 F MG MG . O MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc4 G O2B ATF . O ATF 601 1_555 F MG MG . O MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? # _chem_comp.formula 'C11 H16 F2 N5 O12 P3' _chem_comp.formula_weight 541.189 _chem_comp.id ATF _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHODIFLUOROMETHYLPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATF doub 70 n n PG O2G ATF sing 71 n n PG O3G ATF sing 72 n n PG C3B ATF sing 73 n n O2G HOG2 ATF sing 74 n n O3G HOG3 ATF sing 75 n n PB O1B ATF doub 76 n n PB O2B ATF sing 77 n n PB C3B ATF sing 78 n n PB O3A ATF sing 79 n n O2B HOB2 ATF sing 80 n n C3B F1B ATF sing 81 n n C3B F2B ATF sing 82 n n PA O1A ATF doub 83 n n PA O2A ATF sing 84 n n PA O3A ATF sing 85 n n PA O5' ATF sing 86 n n O2A HOA2 ATF sing 87 n n O5' C5' ATF sing 88 n n C5' C4' ATF sing 89 n n C5' "H5'1" ATF sing 90 n n C5' "H5'2" ATF sing 91 n n C4' O4' ATF sing 92 n n C4' C3' ATF sing 93 n n C4' H4' ATF sing 94 n n O4' C1' ATF sing 95 n n C3' O3' ATF sing 96 n n C3' C2' ATF sing 97 n n C3' H3' ATF sing 98 n n O3' HO3' ATF sing 99 n n C2' O2' ATF sing 100 n n C2' C1' ATF sing 101 n n C2' H2' ATF sing 102 n n O2' HO2' ATF sing 103 n n C1' N9 ATF sing 104 n n C1' H1' ATF sing 105 n n N9 C8 ATF sing 106 n y N9 C4 ATF sing 107 n y C8 N7 ATF doub 108 n y C8 H8 ATF sing 109 n n N7 C5 ATF sing 110 n y C5 C6 ATF sing 111 n y C5 C4 ATF doub 112 n y C6 N6 ATF sing 113 n n C6 N1 ATF doub 114 n y N6 HN61 ATF sing 115 n n N6 HN62 ATF sing 116 n n N1 C2 ATF sing 117 n y C2 N3 ATF doub 118 n y C2 H2 ATF sing 119 n n N3 C4 ATF sing 120 n y # _atom_sites.entry_id 1BWF _atom_sites.fract_transf_matrix[1][1] 0.010023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG Y 1 602 602 MG MG . D 3 ATF Y 1 601 601 ATF ATF . E 4 GOL Y 1 600 600 GOL GOL . F 2 MG O 1 602 602 MG MG . G 3 ATF O 1 601 601 ATF ATF . H 4 GOL O 1 600 600 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATF . . . D 3 46.222 55.759 14.125 1 42.68 ? PG ATF 601 Y 1 HETATM 2 O O1G ATF . . . D 3 45.989 55.426 15.555 1 42.68 ? O1G ATF 601 Y 1 HETATM 3 O O2G ATF . . . D 3 44.85 56.396 13.401 1 42.68 ? O2G ATF 601 Y 1 HETATM 4 O O3G ATF . . . D 3 47.597 56.736 14.004 1 42.68 ? O3G ATF 601 Y 1 HETATM 5 P PB ATF . . . D 3 48.083 54.384 12.453 1 42.68 ? PB ATF 601 Y 1 HETATM 6 O O1B ATF . . . D 3 47.707 53.84 11.128 1 42.68 ? O1B ATF 601 Y 1 HETATM 7 O O2B ATF . . . D 3 48.917 55.844 12.302 1 42.68 ? O2B ATF 601 Y 1 HETATM 8 C C3B ATF . . . D 3 46.637 54.392 13.304 1 42.68 ? C3B ATF 601 Y 1 HETATM 9 F F1B ATF . . . D 3 46.837 53.404 14.196 1 42.68 ? F1B ATF 601 Y 1 HETATM 10 F F2B ATF . . . D 3 45.565 54.016 12.462 1 42.68 ? F2B ATF 601 Y 1 HETATM 11 P PA ATF . . . D 3 50.211 52.736 12.099 1 42.68 ? PA ATF 601 Y 1 HETATM 12 O O1A ATF . . . D 3 51.218 53.721 11.84 1 42.68 ? O1A ATF 601 Y 1 HETATM 13 O O2A ATF . . . D 3 49.564 52.41 10.647 1 42.68 ? O2A ATF 601 Y 1 HETATM 14 O O3A ATF . . . D 3 49.147 53.39 13.144 1 42.68 ? O3A ATF 601 Y 1 HETATM 15 O O5' ATF . . . D 3 50.877 51.371 12.68 1 42.68 ? O5' ATF 601 Y 1 HETATM 16 C C5' ATF . . . D 3 50.116 50.504 13.51 1 42.68 ? C5' ATF 601 Y 1 HETATM 17 C C4' ATF . . . D 3 48.935 49.73 12.924 1 42.68 ? C4' ATF 601 Y 1 HETATM 18 O O4' ATF . . . D 3 49.475 48.61 12.151 1 42.68 ? O4' ATF 601 Y 1 HETATM 19 C C3' ATF . . . D 3 48.264 49.065 14.108 1 42.68 ? C3' ATF 601 Y 1 HETATM 20 O O3' ATF . . . D 3 46.956 48.658 13.884 1 42.68 ? O3' ATF 601 Y 1 HETATM 21 C C2' ATF . . . D 3 49.235 47.916 14.39 1 42.68 ? C2' ATF 601 Y 1 HETATM 22 O O2' ATF . . . D 3 48.62 46.678 14.696 1 42.68 ? O2' ATF 601 Y 1 HETATM 23 C C1' ATF . . . D 3 49.561 47.443 12.989 1 42.68 ? C1' ATF 601 Y 1 HETATM 24 N N9 ATF . . . D 3 50.832 46.688 12.877 1 42.68 ? N9 ATF 601 Y 1 HETATM 25 C C8 ATF . . . D 3 52.086 47.178 13.187 1 42.68 ? C8 ATF 601 Y 1 HETATM 26 N N7 ATF . . . D 3 53.075 46.29 13.057 1 42.68 ? N7 ATF 601 Y 1 HETATM 27 C C5 ATF . . . D 3 52.426 45.108 12.618 1 42.68 ? C5 ATF 601 Y 1 HETATM 28 C C6 ATF . . . D 3 52.88 43.815 12.198 1 42.68 ? C6 ATF 601 Y 1 HETATM 29 N N6 ATF . . . D 3 54.119 43.35 12.194 1 42.68 ? N6 ATF 601 Y 1 HETATM 30 N N1 ATF . . . D 3 51.978 42.958 11.8 1 42.68 ? N1 ATF 601 Y 1 HETATM 31 C C2 ATF . . . D 3 50.69 43.29 11.871 1 42.68 ? C2 ATF 601 Y 1 HETATM 32 N N3 ATF . . . D 3 50.12 44.448 12.189 1 42.68 ? N3 ATF 601 Y 1 HETATM 33 C C4 ATF . . . D 3 51.048 45.351 12.537 1 42.68 ? C4 ATF 601 Y 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #