data_1BWO # _model_server_result.job_id 2ZFlonzgOfB6QU_f8RK4JA _model_server_result.datetime_utc '2024-11-27 03:56:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":92}' # _entry.id 1BWO # _exptl.entry_id 1BWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.585 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BWO _cell.length_a 41.11 _cell.length_b 56.89 _cell.length_c 70.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 50 A CYS 50 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 3 A CYS 3 1_555 A SG CYS 50 A CYS 50 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 13 A CYS 13 1_555 A SG CYS 27 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 28 A CYS 28 1_555 A SG CYS 73 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 48 A CYS 48 1_555 A SG CYS 87 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 3 B CYS 3 1_555 B SG CYS 50 B CYS 50 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 3 B CYS 3 1_555 B SG CYS 50 B CYS 50 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 13 B CYS 13 1_555 B SG CYS 27 B CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 B SG CYS 28 B CYS 28 1_555 B SG CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 48 B CYS 48 1_555 B SG CYS 87 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C22 H47 N O7 P 1' _chem_comp.formula_weight 468.585 _chem_comp.id LPC _chem_comp.mon_nstd_flag . _chem_comp.name '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C0A N1 LPC sing 194 n n C0A H0A1 LPC sing 195 n n C0A H0A2 LPC sing 196 n n C0A H0A3 LPC sing 197 n n C0B N1 LPC sing 198 n n C0B H0B1 LPC sing 199 n n C0B H0B2 LPC sing 200 n n C0B H0B3 LPC sing 201 n n C0C N1 LPC sing 202 n n C0C H0C1 LPC sing 203 n n C0C H0C2 LPC sing 204 n n C0C H0C3 LPC sing 205 n n N1 C2 LPC sing 206 n n C2 C3 LPC sing 207 n n C2 H21 LPC sing 208 n n C2 H22 LPC sing 209 n n C3 O4 LPC sing 210 n n C3 H31 LPC sing 211 n n C3 H32 LPC sing 212 n n O4 P5 LPC sing 213 n n P5 O5A LPC sing 214 n n P5 O5B LPC doub 215 n n P5 O6 LPC sing 216 n n O5A HO5A LPC sing 217 n n O6 C7 LPC sing 218 n n C7 C8 LPC sing 219 n n C7 H71 LPC sing 220 n n C7 H72 LPC sing 221 n n C8 O8 LPC sing 222 n n C8 C9 LPC sing 223 n n C8 H8 LPC sing 224 n n O8 HO8 LPC sing 225 n n C9 OQ2 LPC sing 226 n n C9 H91 LPC sing 227 n n C9 H92 LPC sing 228 n n OQ1 CA LPC doub 229 n n OQ2 CA LPC sing 230 n n CA CB LPC sing 231 n n CB CC LPC sing 232 n n CB HB1 LPC sing 233 n n CB HB2 LPC sing 234 n n CC CD LPC sing 235 n n CC HC1 LPC sing 236 n n CC HC2 LPC sing 237 n n CD CE LPC sing 238 n n CD HD1 LPC sing 239 n n CD HD2 LPC sing 240 n n CE CF LPC sing 241 n n CE HE1 LPC sing 242 n n CE HE2 LPC sing 243 n n CF CG LPC sing 244 n n CF HF1 LPC sing 245 n n CF HF2 LPC sing 246 n n CG CH LPC sing 247 n n CG HG1 LPC sing 248 n n CG HG2 LPC sing 249 n n CH CI LPC sing 250 n n CH HH1 LPC sing 251 n n CH HH2 LPC sing 252 n n CI CJ LPC sing 253 n n CI HI1 LPC sing 254 n n CI HI2 LPC sing 255 n n CJ CK LPC sing 256 n n CJ HJ1 LPC sing 257 n n CJ HJ2 LPC sing 258 n n CK CL LPC sing 259 n n CK HK1 LPC sing 260 n n CK HK2 LPC sing 261 n n CL CM LPC sing 262 n n CL HL1 LPC sing 263 n n CL HL2 LPC sing 264 n n CM CN LPC sing 265 n n CM HM1 LPC sing 266 n n CM HM2 LPC sing 267 n n CN HN1 LPC sing 268 n n CN HN2 LPC sing 269 n n CN HN3 LPC sing 270 n n # _atom_sites.entry_id 1BWO _atom_sites.fract_transf_matrix[1][1] 0.024325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LPC A 1 91 1 LPC LPC . D 2 LPC A 1 92 2 LPC LPC . E 2 LPC B 1 91 1 LPC LPC . F 2 LPC B 1 92 2 LPC LPC . G 3 HOH A 1 93 1 HOH HOH . G 3 HOH A 2 94 2 HOH HOH . G 3 HOH A 3 95 6 HOH HOH . G 3 HOH A 4 96 10 HOH HOH . G 3 HOH A 5 97 11 HOH HOH . G 3 HOH A 6 98 13 HOH HOH . G 3 HOH A 7 99 15 HOH HOH . G 3 HOH A 8 100 16 HOH HOH . G 3 HOH A 9 101 17 HOH HOH . G 3 HOH A 10 102 18 HOH HOH . G 3 HOH A 11 103 21 HOH HOH . G 3 HOH A 12 104 22 HOH HOH . G 3 HOH A 13 105 23 HOH HOH . G 3 HOH A 14 106 24 HOH HOH . G 3 HOH A 15 107 26 HOH HOH . G 3 HOH A 16 108 27 HOH HOH . G 3 HOH A 17 109 29 HOH HOH . G 3 HOH A 18 110 32 HOH HOH . G 3 HOH A 19 111 33 HOH HOH . G 3 HOH A 20 112 34 HOH HOH . G 3 HOH A 21 113 36 HOH HOH . G 3 HOH A 22 114 37 HOH HOH . G 3 HOH A 23 115 38 HOH HOH . G 3 HOH A 24 116 40 HOH HOH . G 3 HOH A 25 117 41 HOH HOH . G 3 HOH A 26 118 46 HOH HOH . G 3 HOH A 27 119 47 HOH HOH . G 3 HOH A 28 120 49 HOH HOH . G 3 HOH A 29 121 51 HOH HOH . G 3 HOH A 30 122 52 HOH HOH . G 3 HOH A 31 123 53 HOH HOH . G 3 HOH A 32 124 54 HOH HOH . G 3 HOH A 33 125 56 HOH HOH . G 3 HOH A 34 126 57 HOH HOH . G 3 HOH A 35 127 58 HOH HOH . G 3 HOH A 36 128 59 HOH HOH . G 3 HOH A 37 129 64 HOH HOH . G 3 HOH A 38 130 65 HOH HOH . G 3 HOH A 39 131 68 HOH HOH . G 3 HOH A 40 132 72 HOH HOH . G 3 HOH A 41 133 74 HOH HOH . G 3 HOH A 42 134 75 HOH HOH . G 3 HOH A 43 135 77 HOH HOH . G 3 HOH A 44 136 79 HOH HOH . G 3 HOH A 45 137 83 HOH HOH . G 3 HOH A 46 138 84 HOH HOH . G 3 HOH A 47 139 93 HOH HOH . G 3 HOH A 48 140 95 HOH HOH . G 3 HOH A 49 141 96 HOH HOH . G 3 HOH A 50 142 97 HOH HOH . G 3 HOH A 51 143 98 HOH HOH . G 3 HOH A 52 144 99 HOH HOH . G 3 HOH A 53 145 102 HOH HOH . G 3 HOH A 54 146 103 HOH HOH . G 3 HOH A 55 147 106 HOH HOH . G 3 HOH A 56 148 107 HOH HOH . G 3 HOH A 57 149 108 HOH HOH . G 3 HOH A 58 150 109 HOH HOH . G 3 HOH A 59 151 111 HOH HOH . G 3 HOH A 60 152 112 HOH HOH . G 3 HOH A 61 153 113 HOH HOH . G 3 HOH A 62 154 114 HOH HOH . G 3 HOH A 63 155 119 HOH HOH . G 3 HOH A 64 156 128 HOH HOH . G 3 HOH A 65 157 129 HOH HOH . G 3 HOH A 66 158 133 HOH HOH . G 3 HOH A 67 159 134 HOH HOH . G 3 HOH A 68 160 135 HOH HOH . G 3 HOH A 69 161 139 HOH HOH . G 3 HOH A 70 162 140 HOH HOH . G 3 HOH A 71 163 141 HOH HOH . G 3 HOH A 72 164 142 HOH HOH . G 3 HOH A 73 165 144 HOH HOH . H 3 HOH B 1 93 3 HOH HOH . H 3 HOH B 2 94 4 HOH HOH . H 3 HOH B 3 95 5 HOH HOH . H 3 HOH B 4 96 7 HOH HOH . H 3 HOH B 5 97 8 HOH HOH . H 3 HOH B 6 98 9 HOH HOH . H 3 HOH B 7 99 12 HOH HOH . H 3 HOH B 8 100 14 HOH HOH . H 3 HOH B 9 101 19 HOH HOH . H 3 HOH B 10 102 20 HOH HOH . H 3 HOH B 11 103 25 HOH HOH . H 3 HOH B 12 104 28 HOH HOH . H 3 HOH B 13 105 30 HOH HOH . H 3 HOH B 14 106 31 HOH HOH . H 3 HOH B 15 107 35 HOH HOH . H 3 HOH B 16 108 39 HOH HOH . H 3 HOH B 17 109 42 HOH HOH . H 3 HOH B 18 110 43 HOH HOH . H 3 HOH B 19 111 44 HOH HOH . H 3 HOH B 20 112 45 HOH HOH . H 3 HOH B 21 113 48 HOH HOH . H 3 HOH B 22 114 50 HOH HOH . H 3 HOH B 23 115 55 HOH HOH . H 3 HOH B 24 116 60 HOH HOH . H 3 HOH B 25 117 61 HOH HOH . H 3 HOH B 26 118 62 HOH HOH . H 3 HOH B 27 119 63 HOH HOH . H 3 HOH B 28 120 66 HOH HOH . H 3 HOH B 29 121 67 HOH HOH . H 3 HOH B 30 122 69 HOH HOH . H 3 HOH B 31 123 70 HOH HOH . H 3 HOH B 32 124 71 HOH HOH . H 3 HOH B 33 125 73 HOH HOH . H 3 HOH B 34 126 76 HOH HOH . H 3 HOH B 35 127 78 HOH HOH . H 3 HOH B 36 128 80 HOH HOH . H 3 HOH B 37 129 81 HOH HOH . H 3 HOH B 38 130 82 HOH HOH . H 3 HOH B 39 131 85 HOH HOH . H 3 HOH B 40 132 86 HOH HOH . H 3 HOH B 41 133 87 HOH HOH . H 3 HOH B 42 134 88 HOH HOH . H 3 HOH B 43 135 89 HOH HOH . H 3 HOH B 44 136 90 HOH HOH . H 3 HOH B 45 137 91 HOH HOH . H 3 HOH B 46 138 92 HOH HOH . H 3 HOH B 47 139 94 HOH HOH . H 3 HOH B 48 140 100 HOH HOH . H 3 HOH B 49 141 101 HOH HOH . H 3 HOH B 50 142 104 HOH HOH . H 3 HOH B 51 143 105 HOH HOH . H 3 HOH B 52 144 110 HOH HOH . H 3 HOH B 53 145 115 HOH HOH . H 3 HOH B 54 146 116 HOH HOH . H 3 HOH B 55 147 117 HOH HOH . H 3 HOH B 56 148 118 HOH HOH . H 3 HOH B 57 149 120 HOH HOH . H 3 HOH B 58 150 121 HOH HOH . H 3 HOH B 59 151 122 HOH HOH . H 3 HOH B 60 152 123 HOH HOH . H 3 HOH B 61 153 124 HOH HOH . H 3 HOH B 62 154 125 HOH HOH . H 3 HOH B 63 155 126 HOH HOH . H 3 HOH B 64 156 127 HOH HOH . H 3 HOH B 65 157 130 HOH HOH . H 3 HOH B 66 158 131 HOH HOH . H 3 HOH B 67 159 132 HOH HOH . H 3 HOH B 68 160 136 HOH HOH . H 3 HOH B 69 161 137 HOH HOH . H 3 HOH B 70 162 138 HOH HOH . H 3 HOH B 71 163 143 HOH HOH . H 3 HOH B 72 164 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C0A LPC . . . F 2 12.538 42.022 76.634 1 97.4 ? C0A LPC 92 B 1 HETATM 2 C C0B LPC . . . F 2 13.731 42.325 78.725 1 97.38 ? C0B LPC 92 B 1 HETATM 3 C C0C LPC . . . F 2 11.639 43.5 78.363 1 98.11 ? C0C LPC 92 B 1 HETATM 4 N N1 LPC . . . F 2 12.903 43.029 77.692 1 98.47 ? N1 LPC 92 B 1 HETATM 5 C C2 LPC . . . F 2 13.675 44.158 77.134 1 96.49 ? C2 LPC 92 B 1 HETATM 6 C C3 LPC . . . F 2 13.037 44.907 75.951 1 93.45 ? C3 LPC 92 B 1 HETATM 7 O O4 LPC . . . F 2 14.002 45.85 75.463 1 91.09 ? O4 LPC 92 B 1 HETATM 8 P P5 LPC . . . F 2 14.087 46.098 73.89 1 88.68 ? P5 LPC 92 B 1 HETATM 9 O O5A LPC . . . F 2 12.885 46.857 73.472 1 87.48 ? O5A LPC 92 B 1 HETATM 10 O O5B LPC . . . F 2 14.366 44.803 73.233 1 88.39 ? O5B LPC 92 B 1 HETATM 11 O O6 LPC . . . F 2 15.382 47.039 73.71 1 84.21 ? O6 LPC 92 B 1 HETATM 12 C C7 LPC . . . F 2 15.526 47.88 72.476 1 73.78 ? C7 LPC 92 B 1 HETATM 13 C C8 LPC . . . F 2 15.274 47.175 71.209 1 66.02 ? C8 LPC 92 B 1 HETATM 14 O O8 LPC . . . F 2 16.381 46.752 70.461 1 66.83 ? O8 LPC 92 B 1 HETATM 15 C C9 LPC . . . F 2 14.379 47.904 70.352 1 58.28 ? C9 LPC 92 B 1 HETATM 16 O OQ1 LPC . . . F 2 11.938 47.911 68.962 1 43.23 ? OQ1 LPC 92 B 1 HETATM 17 O OQ2 LPC . . . F 2 13.854 47.013 69.276 1 48.49 ? OQ2 LPC 92 B 1 HETATM 18 C CA LPC . . . F 2 13.039 47.44 68.535 1 41.59 ? CA LPC 92 B 1 HETATM 19 C CB LPC . . . F 2 13.223 47.458 67.098 1 35.45 ? CB LPC 92 B 1 HETATM 20 C CC LPC . . . F 2 12.763 46.243 66.368 1 28.38 ? CC LPC 92 B 1 HETATM 21 C CD LPC . . . F 2 12.197 46.533 65.011 1 24.79 ? CD LPC 92 B 1 HETATM 22 C CE LPC . . . F 2 13.209 46.619 63.903 1 22.78 ? CE LPC 92 B 1 HETATM 23 C CF LPC . . . F 2 12.605 46.59 62.532 1 23.94 ? CF LPC 92 B 1 HETATM 24 C CG LPC . . . F 2 13.565 46.79 61.394 1 23.33 ? CG LPC 92 B 1 HETATM 25 C CH LPC . . . F 2 12.949 46.755 60.024 1 25.15 ? CH LPC 92 B 1 HETATM 26 C CI LPC . . . F 2 12.019 47.885 59.689 1 24.36 ? CI LPC 92 B 1 HETATM 27 C CJ LPC . . . F 2 11.756 48.076 58.23 1 25.57 ? CJ LPC 92 B 1 HETATM 28 C CK LPC . . . F 2 10.455 48.727 57.9 1 21.99 ? CK LPC 92 B 1 HETATM 29 C CL LPC . . . F 2 10.5 49.742 56.806 1 19.85 ? CL LPC 92 B 1 HETATM 30 C CM LPC . . . F 2 9.452 50.804 56.9 1 22.57 ? CM LPC 92 B 1 HETATM 31 C CN LPC . . . F 2 8.972 51.333 55.581 1 21.78 ? CN LPC 92 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #