data_1BXH # _model_server_result.job_id HvNeyUQKhGQprTQWozm3ag _model_server_result.datetime_utc '2024-11-21 22:29:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":238}' # _entry.id 1BXH # _exptl.entry_id 1BXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BXH _cell.length_a 119.7 _cell.length_b 119.7 _cell.length_c 68.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 AMG MMA C1 H1 . O2 HO2 . sing 2 ? 3 2 1 AMG AMG C1 H1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E MMA 1 E 1 MMA A 242 DIM 2 n E AMG 2 E 2 AMG A 241 DIM 3 n F AMG 1 F 1 AMG D 242 DIM 3 n F AMG 2 F 2 AMG D 201 DIM # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E O2 MMA . E MMA 1 1_555 E C1 AMG . E AMG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale2 F O2 AMG . F AMG 1 1_555 F C1 AMG . F AMG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 G MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 G MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 H CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 H CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 H CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 H CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 G MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 H CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 G MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc10 G MN MN . A MN 238 1_555 Q O HOH . A HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc11 G MN MN . A MN 238 1_555 Q O HOH . A HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc12 H CA CA . A CA 239 1_555 Q O HOH . A HOH 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc13 H CA CA . A CA 239 1_555 Q O HOH . A HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc14 B OE2 GLU 8 B GLU 8 1_555 J MN MN . B MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc15 B OD2 ASP 10 B ASP 10 1_555 J MN MN . B MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc16 B OD1 ASP 10 B ASP 10 1_555 K CA CA . B CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc17 B OD2 ASP 10 B ASP 10 1_555 K CA CA . B CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc18 B O TYR 12 B TYR 12 1_555 K CA CA . B CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc19 B OD1 ASN 14 B ASN 14 1_555 K CA CA . B CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc20 B OD1 ASP 19 B ASP 19 1_555 J MN MN . B MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc21 B OD2 ASP 19 B ASP 19 1_555 K CA CA . B CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc22 B NE2 HIS 24 B HIS 24 1_555 J MN MN . B MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc23 J MN MN . B MN 238 1_555 R O HOH . B HOH 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc24 J MN MN . B MN 238 1_555 R O HOH . B HOH 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc25 K CA CA . B CA 239 1_555 R O HOH . B HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc26 K CA CA . B CA 239 1_555 R O HOH . B HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc27 C OE2 GLU 8 C GLU 8 1_555 M MN MN . C MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc28 C OD2 ASP 10 C ASP 10 1_555 M MN MN . C MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc29 C OD1 ASP 10 C ASP 10 1_555 N CA CA . C CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc30 C OD2 ASP 10 C ASP 10 1_555 N CA CA . C CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc31 C O TYR 12 C TYR 12 1_555 N CA CA . C CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc32 C OD1 ASN 14 C ASN 14 1_555 N CA CA . C CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc33 C OD1 ASP 19 C ASP 19 1_555 M MN MN . C MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc34 C OD2 ASP 19 C ASP 19 1_555 N CA CA . C CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc35 C NE2 HIS 24 C HIS 24 1_555 M MN MN . C MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc36 M MN MN . C MN 238 1_555 S O HOH . C HOH 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc37 M MN MN . C MN 238 1_555 S O HOH . C HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc38 N CA CA . C CA 239 1_555 S O HOH . C HOH 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc39 N CA CA . C CA 239 1_555 S O HOH . C HOH 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc40 D OE2 GLU 8 D GLU 8 1_555 O MN MN . D MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc41 D OD2 ASP 10 D ASP 10 1_555 O MN MN . D MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc42 D OD2 ASP 10 D ASP 10 1_555 P CA CA . D CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc43 D OD1 ASP 10 D ASP 10 1_555 P CA CA . D CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc44 D O TYR 12 D TYR 12 1_555 P CA CA . D CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc45 D OD1 ASN 14 D ASN 14 1_555 P CA CA . D CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc46 D OD1 ASP 19 D ASP 19 1_555 O MN MN . D MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc47 D OD2 ASP 19 D ASP 19 1_555 P CA CA . D CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc48 D NE2 HIS 24 D HIS 24 1_555 O MN MN . D MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc49 O MN MN . D MN 238 1_555 T O HOH . D HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc50 O MN MN . D MN 238 1_555 T O HOH . D HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc51 P CA CA . D CA 239 1_555 T O HOH . D HOH 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc52 P CA CA . D CA 239 1_555 T O HOH . D HOH 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BXH _atom_sites.fract_transf_matrix[1][1] 0.008354 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MN A 1 238 238 MN MN . H 5 CA A 1 239 239 CA CA . I 6 MMA B 1 241 241 MMA DIM . J 4 MN B 1 238 238 MN MN . K 5 CA B 1 239 239 CA CA . L 6 MMA C 1 241 241 MMA DIM . M 4 MN C 1 238 238 MN MN . N 5 CA C 1 239 239 CA CA . O 4 MN D 1 238 238 MN MN . P 5 CA D 1 239 239 CA CA . Q 7 HOH A 1 243 1 HOH HOH . Q 7 HOH A 2 244 4 HOH HOH . Q 7 HOH A 3 245 5 HOH HOH . Q 7 HOH A 4 246 6 HOH HOH . Q 7 HOH A 5 247 15 HOH HOH . Q 7 HOH A 6 248 16 HOH HOH . Q 7 HOH A 7 249 17 HOH HOH . Q 7 HOH A 8 250 19 HOH HOH . Q 7 HOH A 9 251 24 HOH HOH . Q 7 HOH A 10 252 26 HOH HOH . Q 7 HOH A 11 253 27 HOH HOH . Q 7 HOH A 12 254 28 HOH HOH . Q 7 HOH A 13 255 32 HOH HOH . Q 7 HOH A 14 256 33 HOH HOH . Q 7 HOH A 15 257 37 HOH HOH . Q 7 HOH A 16 258 41 HOH HOH . Q 7 HOH A 17 259 42 HOH HOH . Q 7 HOH A 18 260 46 HOH HOH . Q 7 HOH A 19 261 47 HOH HOH . Q 7 HOH A 20 262 55 HOH HOH . Q 7 HOH A 21 263 62 HOH HOH . Q 7 HOH A 22 264 64 HOH HOH . Q 7 HOH A 23 265 65 HOH HOH . Q 7 HOH A 24 266 66 HOH HOH . Q 7 HOH A 25 267 67 HOH HOH . R 7 HOH B 1 242 7 HOH HOH . R 7 HOH B 2 243 8 HOH HOH . R 7 HOH B 3 244 9 HOH HOH . R 7 HOH B 4 245 18 HOH HOH . R 7 HOH B 5 246 20 HOH HOH . R 7 HOH B 6 247 23 HOH HOH . R 7 HOH B 7 248 25 HOH HOH . R 7 HOH B 8 249 29 HOH HOH . R 7 HOH B 9 250 30 HOH HOH . R 7 HOH B 10 251 31 HOH HOH . R 7 HOH B 11 252 34 HOH HOH . R 7 HOH B 12 253 35 HOH HOH . R 7 HOH B 13 254 36 HOH HOH . R 7 HOH B 14 255 43 HOH HOH . R 7 HOH B 15 256 49 HOH HOH . R 7 HOH B 16 257 50 HOH HOH . R 7 HOH B 17 258 51 HOH HOH . R 7 HOH B 18 259 57 HOH HOH . R 7 HOH B 19 260 59 HOH HOH . R 7 HOH B 20 261 61 HOH HOH . R 7 HOH B 21 262 68 HOH HOH . R 7 HOH B 22 263 69 HOH HOH . R 7 HOH B 23 264 70 HOH HOH . R 7 HOH B 24 265 74 HOH HOH . S 7 HOH C 1 242 2 HOH HOH . S 7 HOH C 2 243 10 HOH HOH . S 7 HOH C 3 244 11 HOH HOH . S 7 HOH C 4 245 39 HOH HOH . S 7 HOH C 5 246 48 HOH HOH . S 7 HOH C 6 247 54 HOH HOH . S 7 HOH C 7 248 56 HOH HOH . S 7 HOH C 8 249 58 HOH HOH . S 7 HOH C 9 250 60 HOH HOH . S 7 HOH C 10 251 72 HOH HOH . T 7 HOH D 1 243 3 HOH HOH . T 7 HOH D 2 244 12 HOH HOH . T 7 HOH D 3 245 13 HOH HOH . T 7 HOH D 4 246 14 HOH HOH . T 7 HOH D 5 247 21 HOH HOH . T 7 HOH D 6 248 38 HOH HOH . T 7 HOH D 7 249 40 HOH HOH . T 7 HOH D 8 250 44 HOH HOH . T 7 HOH D 9 251 45 HOH HOH . T 7 HOH D 10 252 52 HOH HOH . T 7 HOH D 11 253 53 HOH HOH . T 7 HOH D 12 254 63 HOH HOH . T 7 HOH D 13 255 73 HOH HOH . T 7 HOH D 14 256 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 4 _atom_site.Cartn_x -10.532 _atom_site.Cartn_y 26.04 _atom_site.Cartn_z 12.969 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 238 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #