data_1BY3 # _model_server_result.job_id mkk5W4ATKXd2zX-k1d6GHg _model_server_result.datetime_utc '2024-12-26 22:36:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1by3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":716}' # _entry.id 1BY3 # _exptl.entry_id 1BY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.345 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-OCTYL-2-HYDROXYETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.2 _cell.angle_gamma 90 _cell.entry_id 1BY3 _cell.length_a 132.9 _cell.length_b 89.9 _cell.length_c 90 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 318 A CYS 318 1_555 A SG CYS 329 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 692 A CYS 692 1_555 A SG CYS 698 A CYS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C10 H22 O2 S' _chem_comp.formula_weight 206.345 _chem_comp.id OES _chem_comp.mon_nstd_flag . _chem_comp.name 'N-OCTYL-2-HYDROXYETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OES sing 237 n n C1 HC11 OES sing 238 n n C1 HC12 OES sing 239 n n C1 HC13 OES sing 240 n n C2 C3 OES sing 241 n n C2 HC21 OES sing 242 n n C2 HC22 OES sing 243 n n C3 C4 OES sing 244 n n C3 HC31 OES sing 245 n n C3 HC32 OES sing 246 n n C4 C5 OES sing 247 n n C4 HC41 OES sing 248 n n C4 HC42 OES sing 249 n n C5 C6 OES sing 250 n n C5 HC51 OES sing 251 n n C5 HC52 OES sing 252 n n C6 C7 OES sing 253 n n C6 HC61 OES sing 254 n n C6 HC62 OES sing 255 n n C7 C8 OES sing 256 n n C7 HC71 OES sing 257 n n C7 HC72 OES sing 258 n n C8 S2 OES sing 259 n n C8 HC81 OES sing 260 n n C8 HC82 OES sing 261 n n S2 C22 OES sing 262 n n S2 O2 OES doub 263 n n C22 C23 OES sing 264 n n C22 H221 OES sing 265 n n C22 H222 OES sing 266 n n C23 O3 OES sing 267 n n C23 H231 OES sing 268 n n C23 H232 OES sing 269 n n O3 HO31 OES sing 270 n n # _atom_sites.entry_id 1BY3 _atom_sites.fract_transf_matrix[1][1] 0.007524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000685 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OES A 1 715 1 OES OES . C 2 OES A 1 716 2 OES OES . D 2 OES A 1 717 3 OES OES . E 2 OES A 1 718 4 OES OES . F 2 OES A 1 719 5 OES OES . G 2 OES A 1 720 6 OES OES . H 2 OES A 1 721 7 OES OES . I 3 HOH A 1 1001 1001 HOH HOH . I 3 HOH A 2 1002 1002 HOH HOH . I 3 HOH A 3 1003 1003 HOH HOH . I 3 HOH A 4 1004 1004 HOH HOH . I 3 HOH A 5 1005 1005 HOH HOH . I 3 HOH A 6 1006 1006 HOH HOH . I 3 HOH A 7 1007 1007 HOH HOH . I 3 HOH A 8 1008 1008 HOH HOH . I 3 HOH A 9 1009 1009 HOH HOH . I 3 HOH A 10 1010 1010 HOH HOH . I 3 HOH A 11 1011 1011 HOH HOH . I 3 HOH A 12 1012 1012 HOH HOH . I 3 HOH A 13 1013 1013 HOH HOH . I 3 HOH A 14 1014 1014 HOH HOH . I 3 HOH A 15 1015 1015 HOH HOH . I 3 HOH A 16 1016 1016 HOH HOH . I 3 HOH A 17 1017 1017 HOH HOH . I 3 HOH A 18 1018 1018 HOH HOH . I 3 HOH A 19 1019 1019 HOH HOH . I 3 HOH A 20 1020 1020 HOH HOH . I 3 HOH A 21 1021 1021 HOH HOH . I 3 HOH A 22 1022 1022 HOH HOH . I 3 HOH A 23 1023 1023 HOH HOH . I 3 HOH A 24 1024 1024 HOH HOH . I 3 HOH A 25 1025 1025 HOH HOH . I 3 HOH A 26 1026 1026 HOH HOH . I 3 HOH A 27 1027 1027 HOH HOH . I 3 HOH A 28 1028 1028 HOH HOH . I 3 HOH A 29 1029 1029 HOH HOH . I 3 HOH A 30 1030 1030 HOH HOH . I 3 HOH A 31 1031 1031 HOH HOH . I 3 HOH A 32 1032 1032 HOH HOH . I 3 HOH A 33 1033 1033 HOH HOH . I 3 HOH A 34 1034 1034 HOH HOH . I 3 HOH A 35 1035 1035 HOH HOH . I 3 HOH A 36 1036 1036 HOH HOH . I 3 HOH A 37 1037 1037 HOH HOH . I 3 HOH A 38 1038 1038 HOH HOH . I 3 HOH A 39 1039 1039 HOH HOH . I 3 HOH A 40 1040 1040 HOH HOH . I 3 HOH A 41 1041 1041 HOH HOH . I 3 HOH A 42 1042 1042 HOH HOH . I 3 HOH A 43 1043 1043 HOH HOH . I 3 HOH A 44 1044 1044 HOH HOH . I 3 HOH A 45 1045 1045 HOH HOH . I 3 HOH A 46 1046 1046 HOH HOH . I 3 HOH A 47 1047 1047 HOH HOH . I 3 HOH A 48 1048 1048 HOH HOH . I 3 HOH A 49 1050 1050 HOH HOH . I 3 HOH A 50 1051 1051 HOH HOH . I 3 HOH A 51 1052 1052 HOH HOH . I 3 HOH A 52 1053 1053 HOH HOH . I 3 HOH A 53 1054 1054 HOH HOH . I 3 HOH A 54 1055 1055 HOH HOH . I 3 HOH A 55 1056 1056 HOH HOH . I 3 HOH A 56 1057 1057 HOH HOH . I 3 HOH A 57 1058 1058 HOH HOH . I 3 HOH A 58 1059 1059 HOH HOH . I 3 HOH A 59 1060 1060 HOH HOH . I 3 HOH A 60 1061 1061 HOH HOH . I 3 HOH A 61 1062 1062 HOH HOH . I 3 HOH A 62 1063 1063 HOH HOH . I 3 HOH A 63 1064 1064 HOH HOH . I 3 HOH A 64 1065 1065 HOH HOH . I 3 HOH A 65 1066 1066 HOH HOH . I 3 HOH A 66 1067 1067 HOH HOH . I 3 HOH A 67 1068 1068 HOH HOH . I 3 HOH A 68 1069 1069 HOH HOH . I 3 HOH A 69 1070 1070 HOH HOH . I 3 HOH A 70 1071 1071 HOH HOH . I 3 HOH A 71 1072 1072 HOH HOH . I 3 HOH A 72 1073 1073 HOH HOH . I 3 HOH A 73 1074 1074 HOH HOH . I 3 HOH A 74 1075 1075 HOH HOH . I 3 HOH A 75 1076 1076 HOH HOH . I 3 HOH A 76 1077 1077 HOH HOH . I 3 HOH A 77 1078 1078 HOH HOH . I 3 HOH A 78 1079 1079 HOH HOH . I 3 HOH A 79 2001 2001 HOH HOH . I 3 HOH A 80 2002 2002 HOH HOH . I 3 HOH A 81 2003 2003 HOH HOH . I 3 HOH A 82 2004 2004 HOH HOH . I 3 HOH A 83 2005 2005 HOH HOH . I 3 HOH A 84 2006 2006 HOH HOH . I 3 HOH A 85 2007 2007 HOH HOH . I 3 HOH A 86 2008 2008 HOH HOH . I 3 HOH A 87 2009 2009 HOH HOH . I 3 HOH A 88 2010 2010 HOH HOH . I 3 HOH A 89 2011 2011 HOH HOH . I 3 HOH A 90 2012 2012 HOH HOH . I 3 HOH A 91 2013 2013 HOH HOH . I 3 HOH A 92 2014 2014 HOH HOH . I 3 HOH A 93 2015 2015 HOH HOH . I 3 HOH A 94 2016 2016 HOH HOH . I 3 HOH A 95 2017 2017 HOH HOH . I 3 HOH A 96 2018 2018 HOH HOH . I 3 HOH A 97 2019 2019 HOH HOH . I 3 HOH A 98 2020 2020 HOH HOH . I 3 HOH A 99 2021 2021 HOH HOH . I 3 HOH A 100 2022 2022 HOH HOH . I 3 HOH A 101 2023 2023 HOH HOH . I 3 HOH A 102 2024 2024 HOH HOH . I 3 HOH A 103 2025 2025 HOH HOH . I 3 HOH A 104 2026 2026 HOH HOH . I 3 HOH A 105 2027 2027 HOH HOH . I 3 HOH A 106 2028 2028 HOH HOH . I 3 HOH A 107 2029 2029 HOH HOH . I 3 HOH A 108 2030 2030 HOH HOH . I 3 HOH A 109 2031 2031 HOH HOH . I 3 HOH A 110 2032 2032 HOH HOH . I 3 HOH A 111 2033 2033 HOH HOH . I 3 HOH A 112 2034 2034 HOH HOH . I 3 HOH A 113 2035 2035 HOH HOH . I 3 HOH A 114 2036 2036 HOH HOH . I 3 HOH A 115 2037 2037 HOH HOH . I 3 HOH A 116 2038 2038 HOH HOH . I 3 HOH A 117 2039 2039 HOH HOH . I 3 HOH A 118 2040 2040 HOH HOH . I 3 HOH A 119 2041 2041 HOH HOH . I 3 HOH A 120 2042 2042 HOH HOH . I 3 HOH A 121 2043 2043 HOH HOH . I 3 HOH A 122 2044 2044 HOH HOH . I 3 HOH A 123 2045 2045 HOH HOH . I 3 HOH A 124 2046 2046 HOH HOH . I 3 HOH A 125 2047 2047 HOH HOH . I 3 HOH A 126 2048 2048 HOH HOH . I 3 HOH A 127 2049 2049 HOH HOH . I 3 HOH A 128 2050 2050 HOH HOH . I 3 HOH A 129 2051 2051 HOH HOH . I 3 HOH A 130 2052 2052 HOH HOH . I 3 HOH A 131 2053 2053 HOH HOH . I 3 HOH A 132 2054 2054 HOH HOH . I 3 HOH A 133 2055 2055 HOH HOH . I 3 HOH A 134 2056 2056 HOH HOH . I 3 HOH A 135 2057 2057 HOH HOH . I 3 HOH A 136 2058 2058 HOH HOH . I 3 HOH A 137 2059 2059 HOH HOH . I 3 HOH A 138 2060 2060 HOH HOH . I 3 HOH A 139 2061 2061 HOH HOH . I 3 HOH A 140 2062 2062 HOH HOH . I 3 HOH A 141 2063 2063 HOH HOH . I 3 HOH A 142 2064 2064 HOH HOH . I 3 HOH A 143 2065 2065 HOH HOH . I 3 HOH A 144 2066 2066 HOH HOH . I 3 HOH A 145 2067 2067 HOH HOH . I 3 HOH A 146 2068 2068 HOH HOH . I 3 HOH A 147 2069 2069 HOH HOH . I 3 HOH A 148 2070 2070 HOH HOH . I 3 HOH A 149 2071 2071 HOH HOH . I 3 HOH A 150 2072 2072 HOH HOH . I 3 HOH A 151 2073 2073 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OES . . . C 2 101.35 22.039 43.18 1 40.89 ? C1 OES 716 A 1 HETATM 2 C C2 OES . . . C 2 101.065 20.56 42.893 1 57.62 ? C2 OES 716 A 1 HETATM 3 C C3 OES . . . C 2 99.583 20.183 43.038 1 58.59 ? C3 OES 716 A 1 HETATM 4 C C4 OES . . . C 2 98.891 19.975 41.687 1 65.56 ? C4 OES 716 A 1 HETATM 5 C C5 OES . . . C 2 97.381 19.697 41.792 1 69.55 ? C5 OES 716 A 1 HETATM 6 C C6 OES . . . C 2 96.657 19.938 40.456 1 71.73 ? C6 OES 716 A 1 HETATM 7 C C7 OES . . . C 2 95.142 19.67 40.473 1 77.39 ? C7 OES 716 A 1 HETATM 8 C C8 OES . . . C 2 94.753 18.219 40.823 1 90.46 ? C8 OES 716 A 1 HETATM 9 S S2 OES . . . C 2 93.09 17.749 40.191 1 96.78 ? S2 OES 716 A 1 HETATM 10 C C22 OES . . . C 2 93.283 17.052 38.522 1 98.82 ? C22 OES 716 A 1 HETATM 11 C C23 OES . . . C 2 93.916 15.658 38.574 1 99.72 ? C23 OES 716 A 1 HETATM 12 O O2 OES . . . C 2 92.464 19.089 40.092 1 103.03 ? O2 OES 716 A 1 HETATM 13 O O3 OES . . . C 2 94.058 15.122 37.28 1 91.31 ? O3 OES 716 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #