data_1BY5
#
_model_server_result.job_id            6Ueq4ws_LkHrU9EdbYStSw 
_model_server_result.datetime_utc      '2024-10-18 16:24:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1by5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":717}' 
#
_entry.id    1BY5 
#
_exptl.entry_id    1BY5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              206.345 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-OCTYL-2-HYDROXYETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.4 
_cell.angle_gamma         90 
_cell.entry_id            1BY5 
_cell.length_a            132.2 
_cell.length_b            89.4 
_cell.length_c            89.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BY5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 318 A CYS 318 1_555 A SG CYS 329 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 692 A CYS 692 1_555 A SG CYS 698 A CYS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 B N AHO 1 B AHO 801 1_555 B C AHO 2 B AHO 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
covale ? covale2 B C AHO 1 B AHO 801 1_555 B N GLY 6 B GLY 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale3 B N AHO 2 B AHO 802 1_555 B C AHO 3 B AHO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? 
covale ? covale4 B N AHO 3 B AHO 803 1_555 B C GLY 4 B GLY 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
metalc ? metalc1 K FE FE . B FE 800 1_555 B O2 AHO 1 B AHO 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc2 K FE FE . B FE 800 1_555 B O3 AHO 1 B AHO 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc3 K FE FE . B FE 800 1_555 B O2 AHO 2 B AHO 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc4 K FE FE . B FE 800 1_555 B O3 AHO 2 B AHO 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc5 K FE FE . B FE 800 1_555 B O2 AHO 3 B AHO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc6 K FE FE . B FE 800 1_555 B O3 AHO 3 B AHO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
#
_chem_comp.formula           'C10 H22 O2 S' 
_chem_comp.formula_weight    206.345 
_chem_comp.id                OES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-OCTYL-2-HYDROXYETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OES sing 263 n n 
C1 HC11 OES sing 264 n n 
C1 HC12 OES sing 265 n n 
C1 HC13 OES sing 266 n n 
C2 C3 OES sing 267 n n 
C2 HC21 OES sing 268 n n 
C2 HC22 OES sing 269 n n 
C3 C4 OES sing 270 n n 
C3 HC31 OES sing 271 n n 
C3 HC32 OES sing 272 n n 
C4 C5 OES sing 273 n n 
C4 HC41 OES sing 274 n n 
C4 HC42 OES sing 275 n n 
C5 C6 OES sing 276 n n 
C5 HC51 OES sing 277 n n 
C5 HC52 OES sing 278 n n 
C6 C7 OES sing 279 n n 
C6 HC61 OES sing 280 n n 
C6 HC62 OES sing 281 n n 
C7 C8 OES sing 282 n n 
C7 HC71 OES sing 283 n n 
C7 HC72 OES sing 284 n n 
C8 S2 OES sing 285 n n 
C8 HC81 OES sing 286 n n 
C8 HC82 OES sing 287 n n 
S2 C22 OES sing 288 n n 
S2 O2 OES doub 289 n n 
C22 C23 OES sing 290 n n 
C22 H221 OES sing 291 n n 
C22 H222 OES sing 292 n n 
C23 O3 OES sing 293 n n 
C23 H231 OES sing 294 n n 
C23 H232 OES sing 295 n n 
O3 HO31 OES sing 296 n n 
#
_atom_sites.entry_id                     1BY5 
_atom_sites.fract_transf_matrix[1][1]    0.007564 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000715 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011186 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011173 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 OES A 1 715 1 OES OES . 
D 3 OES A 1 716 2 OES OES . 
E 3 OES A 1 717 3 OES OES . 
F 3 OES A 1 718 4 OES OES . 
G 3 OES A 1 719 5 OES OES . 
H 3 OES A 1 720 6 OES OES . 
I 3 OES A 1 721 7 OES OES . 
J 3 OES A 1 722 8 OES OES . 
K 4 FE B 1 800 800 FE FE . 
L 5 HOH A 1 1001 1001 HOH HOH . 
L 5 HOH A 2 1002 1002 HOH HOH . 
L 5 HOH A 3 1003 1003 HOH HOH . 
L 5 HOH A 4 1004 1004 HOH HOH . 
L 5 HOH A 5 1005 1005 HOH HOH . 
L 5 HOH A 6 1006 1006 HOH HOH . 
L 5 HOH A 7 1007 1007 HOH HOH . 
L 5 HOH A 8 1008 1008 HOH HOH . 
L 5 HOH A 9 1009 1009 HOH HOH . 
L 5 HOH A 10 1010 1010 HOH HOH . 
L 5 HOH A 11 1011 1011 HOH HOH . 
L 5 HOH A 12 1012 1012 HOH HOH . 
L 5 HOH A 13 1013 1013 HOH HOH . 
L 5 HOH A 14 1014 1014 HOH HOH . 
L 5 HOH A 15 1015 1015 HOH HOH . 
L 5 HOH A 16 1016 1016 HOH HOH . 
L 5 HOH A 17 1017 1017 HOH HOH . 
L 5 HOH A 18 1018 1018 HOH HOH . 
L 5 HOH A 19 1019 1019 HOH HOH . 
L 5 HOH A 20 1020 1020 HOH HOH . 
L 5 HOH A 21 1021 1021 HOH HOH . 
L 5 HOH A 22 1022 1022 HOH HOH . 
L 5 HOH A 23 1023 1023 HOH HOH . 
L 5 HOH A 24 1024 1024 HOH HOH . 
L 5 HOH A 25 1025 1025 HOH HOH . 
L 5 HOH A 26 1026 1026 HOH HOH . 
L 5 HOH A 27 1027 1027 HOH HOH . 
L 5 HOH A 28 1028 1028 HOH HOH . 
L 5 HOH A 29 1029 1029 HOH HOH . 
L 5 HOH A 30 1030 1030 HOH HOH . 
L 5 HOH A 31 1031 1031 HOH HOH . 
L 5 HOH A 32 1032 1032 HOH HOH . 
L 5 HOH A 33 1033 1033 HOH HOH . 
L 5 HOH A 34 1034 1034 HOH HOH . 
L 5 HOH A 35 1035 1035 HOH HOH . 
L 5 HOH A 36 1036 1036 HOH HOH . 
L 5 HOH A 37 1037 1037 HOH HOH . 
L 5 HOH A 38 1038 1038 HOH HOH . 
L 5 HOH A 39 1039 1039 HOH HOH . 
L 5 HOH A 40 1040 1040 HOH HOH . 
L 5 HOH A 41 1041 1041 HOH HOH . 
L 5 HOH A 42 1042 1042 HOH HOH . 
L 5 HOH A 43 1043 1043 HOH HOH . 
L 5 HOH A 44 1044 1044 HOH HOH . 
L 5 HOH A 45 1045 1045 HOH HOH . 
L 5 HOH A 46 1046 1046 HOH HOH . 
L 5 HOH A 47 1047 1047 HOH HOH . 
L 5 HOH A 48 1048 1048 HOH HOH . 
L 5 HOH A 49 1049 1049 HOH HOH . 
L 5 HOH A 50 1050 1050 HOH HOH . 
L 5 HOH A 51 1051 1051 HOH HOH . 
L 5 HOH A 52 1052 1052 HOH HOH . 
L 5 HOH A 53 1053 1053 HOH HOH . 
L 5 HOH A 54 1054 1054 HOH HOH . 
L 5 HOH A 55 1055 1055 HOH HOH . 
L 5 HOH A 56 1056 1056 HOH HOH . 
L 5 HOH A 57 3001 3001 HOH HOH . 
L 5 HOH A 58 3002 3002 HOH HOH . 
L 5 HOH A 59 3003 3003 HOH HOH . 
L 5 HOH A 60 3004 3004 HOH HOH . 
L 5 HOH A 61 3005 3005 HOH HOH . 
L 5 HOH A 62 3006 3006 HOH HOH . 
L 5 HOH A 63 3007 3007 HOH HOH . 
L 5 HOH A 64 3008 3008 HOH HOH . 
L 5 HOH A 65 3009 3009 HOH HOH . 
L 5 HOH A 66 3010 3010 HOH HOH . 
L 5 HOH A 67 3011 3011 HOH HOH . 
L 5 HOH A 68 3012 3012 HOH HOH . 
L 5 HOH A 69 3013 3013 HOH HOH . 
L 5 HOH A 70 3014 3014 HOH HOH . 
L 5 HOH A 71 3015 3015 HOH HOH . 
L 5 HOH A 72 3016 3016 HOH HOH . 
L 5 HOH A 73 3017 3017 HOH HOH . 
L 5 HOH A 74 3018 3018 HOH HOH . 
L 5 HOH A 75 3019 3019 HOH HOH . 
L 5 HOH A 76 3020 3020 HOH HOH . 
L 5 HOH A 77 3021 3021 HOH HOH . 
L 5 HOH A 78 3022 3022 HOH HOH . 
L 5 HOH A 79 3023 3023 HOH HOH . 
L 5 HOH A 80 3024 3024 HOH HOH . 
L 5 HOH A 81 3025 3025 HOH HOH . 
L 5 HOH A 82 3026 3026 HOH HOH . 
L 5 HOH A 83 3027 3027 HOH HOH . 
L 5 HOH A 84 3028 3028 HOH HOH . 
L 5 HOH A 85 3029 3029 HOH HOH . 
L 5 HOH A 86 3030 3030 HOH HOH . 
L 5 HOH A 87 3031 3031 HOH HOH . 
L 5 HOH A 88 3032 3032 HOH HOH . 
L 5 HOH A 89 3033 3033 HOH HOH . 
L 5 HOH A 90 3034 3034 HOH HOH . 
L 5 HOH A 91 3035 3035 HOH HOH . 
L 5 HOH A 92 3036 3036 HOH HOH . 
L 5 HOH A 93 6001 6001 HOH HOH . 
L 5 HOH A 94 6002 6002 HOH HOH . 
L 5 HOH A 95 6003 6003 HOH HOH . 
L 5 HOH A 96 6004 6004 HOH HOH . 
L 5 HOH A 97 6005 6005 HOH HOH . 
L 5 HOH A 98 6006 6006 HOH HOH . 
L 5 HOH A 99 6007 6007 HOH HOH . 
L 5 HOH A 100 6008 6008 HOH HOH . 
L 5 HOH A 101 6009 6009 HOH HOH . 
L 5 HOH A 102 6010 6010 HOH HOH . 
L 5 HOH A 103 6011 6011 HOH HOH . 
L 5 HOH A 104 6012 6012 HOH HOH . 
L 5 HOH A 105 6013 6013 HOH HOH . 
L 5 HOH A 106 6014 6014 HOH HOH . 
L 5 HOH A 107 6015 6015 HOH HOH . 
L 5 HOH A 108 6016 6016 HOH HOH . 
L 5 HOH A 109 6017 6017 HOH HOH . 
L 5 HOH A 110 6018 6018 HOH HOH . 
L 5 HOH A 111 6019 6019 HOH HOH . 
L 5 HOH A 112 6020 6020 HOH HOH . 
L 5 HOH A 113 6021 6021 HOH HOH . 
L 5 HOH A 114 6022 6022 HOH HOH . 
L 5 HOH A 115 6023 6023 HOH HOH . 
L 5 HOH A 116 6024 6024 HOH HOH . 
L 5 HOH A 117 6025 6025 HOH HOH . 
L 5 HOH A 118 6026 6026 HOH HOH . 
L 5 HOH A 119 6027 6027 HOH HOH . 
L 5 HOH A 120 6028 6028 HOH HOH . 
L 5 HOH A 121 6029 6029 HOH HOH . 
L 5 HOH A 122 6030 6030 HOH HOH . 
L 5 HOH A 123 6031 6031 HOH HOH . 
L 5 HOH A 124 6032 6032 HOH HOH . 
L 5 HOH A 125 6033 6033 HOH HOH . 
L 5 HOH A 126 6034 6034 HOH HOH . 
L 5 HOH A 127 6035 6035 HOH HOH . 
L 5 HOH A 128 6036 6036 HOH HOH . 
L 5 HOH A 129 6037 6037 HOH HOH . 
L 5 HOH A 130 6038 6038 HOH HOH . 
L 5 HOH A 131 6039 6039 HOH HOH . 
L 5 HOH A 132 6040 6040 HOH HOH . 
L 5 HOH A 133 6041 6041 HOH HOH . 
L 5 HOH A 134 6042 6042 HOH HOH . 
L 5 HOH A 135 6043 6043 HOH HOH . 
L 5 HOH A 136 6044 6044 HOH HOH . 
L 5 HOH A 137 6045 6045 HOH HOH . 
L 5 HOH A 138 6046 6046 HOH HOH . 
L 5 HOH A 139 6047 6047 HOH HOH . 
L 5 HOH A 140 6048 6048 HOH HOH . 
L 5 HOH A 141 6049 6049 HOH HOH . 
L 5 HOH A 142 6050 6050 HOH HOH . 
L 5 HOH A 143 6051 6051 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OES . . . E 3 97.487 29.067 50.848 1 86.51 ? C1 OES 717 A 1 
HETATM 2 C C2 OES . . . E 3 96.887 29.549 52.13 1 90.07 ? C2 OES 717 A 1 
HETATM 3 C C3 OES . . . E 3 95.457 29.037 52.356 1 91.96 ? C3 OES 717 A 1 
HETATM 4 C C4 OES . . . E 3 95.144 28.778 53.836 1 91.91 ? C4 OES 717 A 1 
HETATM 5 C C5 OES . . . E 3 93.643 28.817 54.169 1 92.1 ? C5 OES 717 A 1 
HETATM 6 C C6 OES . . . E 3 93.025 27.416 54.322 1 93.17 ? C6 OES 717 A 1 
HETATM 7 C C7 OES . . . E 3 91.518 27.408 54.667 1 95.9 ? C7 OES 717 A 1 
HETATM 8 C C8 OES . . . E 3 91.162 28.102 56.005 1 96.29 ? C8 OES 717 A 1 
HETATM 9 S S2 OES . . . E 3 89.998 29.496 55.785 1 99.02 ? S2 OES 717 A 1 
HETATM 10 C C22 OES . . . E 3 88.29 28.896 55.931 1 92.96 ? C22 OES 717 A 1 
HETATM 11 C C23 OES . . . E 3 87.955 28.593 57.323 1 90.12 ? C23 OES 717 A 1 
HETATM 12 O O2 OES . . . E 3 90.295 29.819 54.365 1 100.58 ? O2 OES 717 A 1 
HETATM 13 O O3 OES . . . E 3 86.626 28.144 57.425 1 85.38 ? O3 OES 717 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#