data_1BYG # _model_server_result.job_id k3ogZy3SwsArWkXd9hHinQ _model_server_result.datetime_utc '2024-11-04 22:52:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1byg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1BYG # _exptl.entry_id 1BYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BYG _cell.length_a 44.49 _cell.length_b 120.58 _cell.length_c 48.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 290 n n O4 C21 STU sing 291 n n C25 C24 STU sing 292 n n C25 N3 STU sing 293 n n C25 H25 STU sing 294 n n C24 C23 STU sing 295 n n C24 H241 STU sing 296 n n C24 H242 STU sing 297 n n C23 C22 STU sing 298 n n C23 N4 STU sing 299 n n C23 H23 STU sing 300 n n C22 C21 STU sing 301 n n C22 O6 STU sing 302 n n C22 H22 STU sing 303 n n C21 C26 STU sing 304 n n C21 N2 STU sing 305 n n C26 H261 STU sing 306 n n C26 H262 STU sing 307 n n C26 H263 STU sing 308 n n N2 C18 STU sing 309 n y N2 C17 STU sing 310 n y C18 C19 STU doub 311 n y C18 C11 STU sing 312 n y C19 C6 STU sing 313 n y C19 N3 STU sing 314 n y C6 C7 STU doub 315 n y C6 C5 STU sing 316 n y C7 C10 STU sing 317 n y C7 C8 STU sing 318 n n C10 C11 STU doub 319 n y C10 C9 STU sing 320 n n C11 C12 STU sing 321 n y C12 C17 STU doub 322 n y C12 C13 STU sing 323 n y C17 C16 STU sing 324 n y C16 C15 STU doub 325 n y C16 H16 STU sing 326 n n C15 C14 STU sing 327 n y C15 H15 STU sing 328 n n C14 C13 STU doub 329 n y C14 H14 STU sing 330 n n C13 H13 STU sing 331 n n C9 N1 STU sing 332 n n C9 H91 STU sing 333 n n C9 H92 STU sing 334 n n N1 C8 STU sing 335 n n N1 HN1 STU sing 336 n n C8 O5 STU doub 337 n n C5 C20 STU doub 338 n y C5 C4 STU sing 339 n y C20 C1 STU sing 340 n y C20 N3 STU sing 341 n y C1 C2 STU doub 342 n y C1 H1 STU sing 343 n n C2 C3 STU sing 344 n y C2 H2 STU sing 345 n n C3 C4 STU doub 346 n y C3 H3 STU sing 347 n n C4 H4 STU sing 348 n n O6 C27 STU sing 349 n n C27 H271 STU sing 350 n n C27 H272 STU sing 351 n n C27 H273 STU sing 352 n n N4 C28 STU sing 353 n n N4 HN4 STU sing 354 n n C28 H281 STU sing 355 n n C28 H282 STU sing 356 n n C28 H283 STU sing 357 n n # _atom_sites.entry_id 1BYG _atom_sites.fract_transf_matrix[1][1] 0.022477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STU A 1 501 501 STU STU . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 56 56 HOH HOH . C 3 HOH A 57 57 57 HOH HOH . C 3 HOH A 58 58 58 HOH HOH . C 3 HOH A 59 59 59 HOH HOH . C 3 HOH A 60 60 60 HOH HOH . C 3 HOH A 61 61 61 HOH HOH . C 3 HOH A 62 62 62 HOH HOH . C 3 HOH A 63 63 63 HOH HOH . C 3 HOH A 64 64 64 HOH HOH . C 3 HOH A 65 65 65 HOH HOH . C 3 HOH A 66 66 66 HOH HOH . C 3 HOH A 67 67 67 HOH HOH . C 3 HOH A 68 68 68 HOH HOH . C 3 HOH A 69 69 69 HOH HOH . C 3 HOH A 70 70 70 HOH HOH . C 3 HOH A 71 71 71 HOH HOH . C 3 HOH A 72 72 72 HOH HOH . C 3 HOH A 73 73 73 HOH HOH . C 3 HOH A 74 74 74 HOH HOH . C 3 HOH A 75 75 75 HOH HOH . C 3 HOH A 76 76 76 HOH HOH . C 3 HOH A 77 77 77 HOH HOH . C 3 HOH A 78 78 78 HOH HOH . C 3 HOH A 79 79 79 HOH HOH . C 3 HOH A 80 80 80 HOH HOH . C 3 HOH A 81 81 81 HOH HOH . C 3 HOH A 82 82 82 HOH HOH . C 3 HOH A 83 83 83 HOH HOH . C 3 HOH A 84 84 84 HOH HOH . C 3 HOH A 85 85 85 HOH HOH . C 3 HOH A 86 86 86 HOH HOH . C 3 HOH A 87 87 87 HOH HOH . C 3 HOH A 88 88 88 HOH HOH . C 3 HOH A 89 89 89 HOH HOH . C 3 HOH A 90 90 90 HOH HOH . C 3 HOH A 91 91 91 HOH HOH . C 3 HOH A 92 92 92 HOH HOH . C 3 HOH A 93 93 93 HOH HOH . C 3 HOH A 94 94 94 HOH HOH . C 3 HOH A 95 95 95 HOH HOH . C 3 HOH A 96 96 96 HOH HOH . C 3 HOH A 97 97 97 HOH HOH . C 3 HOH A 98 98 98 HOH HOH . C 3 HOH A 99 99 99 HOH HOH . C 3 HOH A 100 100 100 HOH HOH . C 3 HOH A 101 101 101 HOH HOH . C 3 HOH A 102 102 102 HOH HOH . C 3 HOH A 103 103 103 HOH HOH . C 3 HOH A 104 104 104 HOH HOH . C 3 HOH A 105 105 105 HOH HOH . C 3 HOH A 106 106 106 HOH HOH . C 3 HOH A 107 107 107 HOH HOH . C 3 HOH A 108 108 108 HOH HOH . C 3 HOH A 109 109 109 HOH HOH . C 3 HOH A 110 110 110 HOH HOH . C 3 HOH A 111 111 111 HOH HOH . C 3 HOH A 112 112 112 HOH HOH . C 3 HOH A 113 113 113 HOH HOH . C 3 HOH A 114 114 114 HOH HOH . C 3 HOH A 115 115 115 HOH HOH . C 3 HOH A 116 116 116 HOH HOH . C 3 HOH A 117 117 117 HOH HOH . C 3 HOH A 118 118 118 HOH HOH . C 3 HOH A 119 119 119 HOH HOH . C 3 HOH A 120 120 120 HOH HOH . C 3 HOH A 121 121 121 HOH HOH . C 3 HOH A 122 122 122 HOH HOH . C 3 HOH A 123 123 123 HOH HOH . C 3 HOH A 124 124 124 HOH HOH . C 3 HOH A 125 125 125 HOH HOH . C 3 HOH A 126 126 126 HOH HOH . C 3 HOH A 127 127 127 HOH HOH . C 3 HOH A 128 128 128 HOH HOH . C 3 HOH A 129 129 129 HOH HOH . C 3 HOH A 130 130 130 HOH HOH . C 3 HOH A 131 131 131 HOH HOH . C 3 HOH A 132 132 132 HOH HOH . C 3 HOH A 133 133 133 HOH HOH . C 3 HOH A 134 134 134 HOH HOH . C 3 HOH A 135 135 135 HOH HOH . C 3 HOH A 136 136 136 HOH HOH . C 3 HOH A 137 137 137 HOH HOH . C 3 HOH A 138 138 138 HOH HOH . C 3 HOH A 139 139 139 HOH HOH . C 3 HOH A 140 140 140 HOH HOH . C 3 HOH A 141 141 141 HOH HOH . C 3 HOH A 142 142 142 HOH HOH . C 3 HOH A 143 143 143 HOH HOH . C 3 HOH A 144 144 144 HOH HOH . C 3 HOH A 145 145 145 HOH HOH . C 3 HOH A 146 146 146 HOH HOH . C 3 HOH A 147 147 147 HOH HOH . C 3 HOH A 148 148 148 HOH HOH . C 3 HOH A 149 149 149 HOH HOH . C 3 HOH A 150 150 150 HOH HOH . C 3 HOH A 151 151 151 HOH HOH . C 3 HOH A 152 152 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . B 2 28.973 42.614 12.453 1 27.46 ? O4 STU 501 A 1 HETATM 2 C C25 STU . . . B 2 29.029 43.15 13.745 1 28.61 ? C25 STU 501 A 1 HETATM 3 C C24 STU . . . B 2 28.007 42.567 14.714 1 29.25 ? C24 STU 501 A 1 HETATM 4 C C23 STU . . . B 2 27.132 41.47 14.11 1 30.29 ? C23 STU 501 A 1 HETATM 5 C C22 STU . . . B 2 26.548 42.164 12.867 1 29.18 ? C22 STU 501 A 1 HETATM 6 C C21 STU . . . B 2 27.653 42.533 11.832 1 29.61 ? C21 STU 501 A 1 HETATM 7 C C26 STU . . . B 2 27.842 41.331 10.891 1 28.05 ? C26 STU 501 A 1 HETATM 8 N N2 STU . . . B 2 27.389 43.828 11.123 1 28.75 ? N2 STU 501 A 1 HETATM 9 C C18 STU . . . B 2 27.888 45.049 11.502 1 28.23 ? C18 STU 501 A 1 HETATM 10 C C19 STU . . . B 2 28.657 45.41 12.618 1 28.02 ? C19 STU 501 A 1 HETATM 11 C C6 STU . . . B 2 28.93 46.755 12.924 1 28.09 ? C6 STU 501 A 1 HETATM 12 C C7 STU . . . B 2 28.447 47.747 12.057 1 29.05 ? C7 STU 501 A 1 HETATM 13 C C10 STU . . . B 2 27.76 47.392 10.921 1 28.98 ? C10 STU 501 A 1 HETATM 14 C C11 STU . . . B 2 27.433 46.058 10.654 1 28.45 ? C11 STU 501 A 1 HETATM 15 C C12 STU . . . B 2 26.609 45.427 9.689 1 29.66 ? C12 STU 501 A 1 HETATM 16 C C17 STU . . . B 2 26.594 44.046 9.994 1 29.04 ? C17 STU 501 A 1 HETATM 17 C C16 STU . . . B 2 25.846 43.157 9.192 1 28.82 ? C16 STU 501 A 1 HETATM 18 C C15 STU . . . B 2 25.118 43.686 8.127 1 29.75 ? C15 STU 501 A 1 HETATM 19 C C14 STU . . . B 2 25.144 45.064 7.809 1 30.53 ? C14 STU 501 A 1 HETATM 20 C C13 STU . . . B 2 25.885 45.948 8.585 1 30.12 ? C13 STU 501 A 1 HETATM 21 C C9 STU . . . B 2 27.503 48.634 10.108 1 29.19 ? C9 STU 501 A 1 HETATM 22 N N1 STU . . . B 2 28.024 49.665 10.946 1 28.97 ? N1 STU 501 A 1 HETATM 23 C C8 STU . . . B 2 28.573 49.212 12.093 1 30.32 ? C8 STU 501 A 1 HETATM 24 O O5 STU . . . B 2 29.145 49.897 12.983 1 32.69 ? O5 STU 501 A 1 HETATM 25 C C5 STU . . . B 2 29.63 46.774 14.142 1 28.33 ? C5 STU 501 A 1 HETATM 26 C C20 STU . . . B 2 29.768 45.423 14.54 1 28.49 ? C20 STU 501 A 1 HETATM 27 C C1 STU . . . B 2 30.41 44.97 15.71 1 27.59 ? C1 STU 501 A 1 HETATM 28 C C2 STU . . . B 2 30.922 46.033 16.441 1 28.63 ? C2 STU 501 A 1 HETATM 29 C C3 STU . . . B 2 30.819 47.389 16.069 1 28.98 ? C3 STU 501 A 1 HETATM 30 C C4 STU . . . B 2 30.16 47.834 14.926 1 29.08 ? C4 STU 501 A 1 HETATM 31 N N3 STU . . . B 2 29.153 44.605 13.593 1 28.31 ? N3 STU 501 A 1 HETATM 32 O O6 STU . . . B 2 26.101 43.414 13.387 1 29.87 ? O6 STU 501 A 1 HETATM 33 C C27 STU . . . B 2 24.684 43.624 13.308 1 31.52 ? C27 STU 501 A 1 HETATM 34 N N4 STU . . . B 2 26.018 40.937 14.919 1 32.59 ? N4 STU 501 A 1 HETATM 35 C C28 STU . . . B 2 26.42 40.49 16.277 1 33.25 ? C28 STU 501 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #