data_1BYH # _model_server_result.job_id mIGLsaBHQnFMcaiQSzhyZg _model_server_result.datetime_utc '2024-11-13 08:13:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1byh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":215}' # _entry.id 1BYH # _exptl.entry_id 1BYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.122 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-BUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BYH _cell.length_a 64.32 _cell.length_b 78.52 _cell.length_c 39.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC ? 216 BGC 2 n B BGC 2 B 2 BGC ? 217 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 32 1_555 A SG CYS 61 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale1 A OE2 GLU 105 A GLU 105 1_555 D C1 NBU . A NBU 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale2 D C4 NBU . A NBU 215 1_555 B O1 BGC . B BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? metalc ? metalc1 A O PRO 9 A PRO 9 1_555 C CA CA . A CA 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? metalc ? metalc2 A O GLY 45 A GLY 45 1_555 C CA CA . A CA 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? metalc ? metalc3 A O ASP 207 A ASP 207 1_555 C CA CA . A CA 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc4 C CA CA . A CA 218 1_555 E O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? # _chem_comp.formula 'C4 H10' _chem_comp.formula_weight 58.122 _chem_comp.id NBU _chem_comp.mon_nstd_flag . _chem_comp.name N-BUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NBU sing 261 n n C1 H11 NBU sing 262 n n C1 H12 NBU sing 263 n n C1 H13 NBU sing 264 n n C2 C3 NBU sing 265 n n C2 H21 NBU sing 266 n n C2 H22 NBU sing 267 n n C3 C4 NBU sing 268 n n C3 H31 NBU sing 269 n n C3 H32 NBU sing 270 n n C4 H41 NBU sing 271 n n C4 H42 NBU sing 272 n n C4 H43 NBU sing 273 n n # _atom_sites.entry_id 1BYH _atom_sites.fract_transf_matrix[1][1] 0.015547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 218 218 CA CA . D 4 NBU A 1 215 215 NBU BUT . E 5 HOH A 1 219 219 HOH HOH . E 5 HOH A 2 220 220 HOH HOH . E 5 HOH A 3 221 221 HOH HOH . E 5 HOH A 4 222 222 HOH HOH . E 5 HOH A 5 223 223 HOH HOH . E 5 HOH A 6 224 224 HOH HOH . E 5 HOH A 7 225 225 HOH HOH . E 5 HOH A 8 226 226 HOH HOH . E 5 HOH A 9 227 227 HOH HOH . E 5 HOH A 10 228 228 HOH HOH . E 5 HOH A 11 229 229 HOH HOH . E 5 HOH A 12 230 230 HOH HOH . E 5 HOH A 13 231 231 HOH HOH . E 5 HOH A 14 232 232 HOH HOH . E 5 HOH A 15 233 233 HOH HOH . E 5 HOH A 16 234 234 HOH HOH . E 5 HOH A 17 235 235 HOH HOH . E 5 HOH A 18 236 236 HOH HOH . E 5 HOH A 19 237 237 HOH HOH . E 5 HOH A 20 238 238 HOH HOH . E 5 HOH A 21 239 239 HOH HOH . E 5 HOH A 22 240 240 HOH HOH . E 5 HOH A 23 241 241 HOH HOH . E 5 HOH A 24 242 242 HOH HOH . E 5 HOH A 25 243 243 HOH HOH . E 5 HOH A 26 244 244 HOH HOH . E 5 HOH A 27 245 245 HOH HOH . E 5 HOH A 28 246 246 HOH HOH . E 5 HOH A 29 247 247 HOH HOH . E 5 HOH A 30 248 248 HOH HOH . E 5 HOH A 31 249 249 HOH HOH . E 5 HOH A 32 250 250 HOH HOH . E 5 HOH A 33 251 251 HOH HOH . E 5 HOH A 34 252 252 HOH HOH . E 5 HOH A 35 253 253 HOH HOH . E 5 HOH A 36 254 254 HOH HOH . E 5 HOH A 37 255 255 HOH HOH . E 5 HOH A 38 256 256 HOH HOH . E 5 HOH A 39 257 257 HOH HOH . E 5 HOH A 40 258 258 HOH HOH . E 5 HOH A 41 259 259 HOH HOH . E 5 HOH A 42 260 260 HOH HOH . E 5 HOH A 43 261 261 HOH HOH . E 5 HOH A 44 262 262 HOH HOH . E 5 HOH A 45 263 263 HOH HOH . E 5 HOH A 46 264 264 HOH HOH . E 5 HOH A 47 265 265 HOH HOH . E 5 HOH A 48 266 266 HOH HOH . E 5 HOH A 49 267 267 HOH HOH . E 5 HOH A 50 268 268 HOH HOH . E 5 HOH A 51 269 269 HOH HOH . E 5 HOH A 52 270 270 HOH HOH . E 5 HOH A 53 271 271 HOH HOH . E 5 HOH A 54 272 272 HOH HOH . E 5 HOH A 55 273 273 HOH HOH . E 5 HOH A 56 274 274 HOH HOH . E 5 HOH A 57 275 275 HOH HOH . E 5 HOH A 58 276 276 HOH HOH . E 5 HOH A 59 277 277 HOH HOH . E 5 HOH A 60 278 278 HOH HOH . E 5 HOH A 61 279 279 HOH HOH . E 5 HOH A 62 280 280 HOH HOH . E 5 HOH A 63 281 281 HOH HOH . E 5 HOH A 64 282 282 HOH HOH . E 5 HOH A 65 283 283 HOH HOH . E 5 HOH A 66 284 284 HOH HOH . E 5 HOH A 67 285 285 HOH HOH . E 5 HOH A 68 286 286 HOH HOH . E 5 HOH A 69 287 287 HOH HOH . E 5 HOH A 70 288 288 HOH HOH . E 5 HOH A 71 289 289 HOH HOH . E 5 HOH A 72 290 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NBU . . . D 4 15.38 17.391 9.439 1 23.46 ? C1 NBU 215 A 1 HETATM 2 C C2 NBU . . . D 4 15.713 18.744 8.789 1 25.63 ? C2 NBU 215 A 1 HETATM 3 C C3 NBU . . . D 4 16.131 18.685 7.325 1 29.01 ? C3 NBU 215 A 1 HETATM 4 C C4 NBU . . . D 4 15.138 18.082 6.341 1 32.04 ? C4 NBU 215 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #