data_1BYH
#
_model_server_result.job_id            3L4EqsgxQeKsXuLqDSfumQ 
_model_server_result.datetime_utc      '2024-11-13 08:08:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1byh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":218}' 
#
_entry.id    1BYH 
#
_exptl.entry_id    1BYH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BYH 
_cell.length_a            64.32 
_cell.length_b            78.52 
_cell.length_c            39.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BYH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   BGC 
_pdbx_entity_branch_link.comp_id_2                   BGC 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B BGC 1 B 1 BGC ? 216 BGC 
2 n B BGC 2 B 2 BGC ? 217 BGC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 32 A CYS 32 1_555 A SG CYS 61 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
covale ? covale1 A OE2 GLU 105 A GLU 105 1_555 D C1 NBU . A NBU 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? 
covale ? covale2 D C4 NBU . A NBU 215 1_555 B O1 BGC . B BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? 
metalc ? metalc1 A O PRO 9 A PRO 9 1_555 C CA CA . A CA 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? 
metalc ? metalc2 A O GLY 45 A GLY 45 1_555 C CA CA . A CA 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? 
metalc ? metalc3 A O ASP 207 A ASP 207 1_555 C CA CA . A CA 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc4 C CA CA . A CA 218 1_555 E O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1BYH 
_atom_sites.fract_transf_matrix[1][1]    0.015547 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012736 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025445 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 218 218 CA CA . 
D 4 NBU A 1 215 215 NBU BUT . 
E 5 HOH A 1 219 219 HOH HOH . 
E 5 HOH A 2 220 220 HOH HOH . 
E 5 HOH A 3 221 221 HOH HOH . 
E 5 HOH A 4 222 222 HOH HOH . 
E 5 HOH A 5 223 223 HOH HOH . 
E 5 HOH A 6 224 224 HOH HOH . 
E 5 HOH A 7 225 225 HOH HOH . 
E 5 HOH A 8 226 226 HOH HOH . 
E 5 HOH A 9 227 227 HOH HOH . 
E 5 HOH A 10 228 228 HOH HOH . 
E 5 HOH A 11 229 229 HOH HOH . 
E 5 HOH A 12 230 230 HOH HOH . 
E 5 HOH A 13 231 231 HOH HOH . 
E 5 HOH A 14 232 232 HOH HOH . 
E 5 HOH A 15 233 233 HOH HOH . 
E 5 HOH A 16 234 234 HOH HOH . 
E 5 HOH A 17 235 235 HOH HOH . 
E 5 HOH A 18 236 236 HOH HOH . 
E 5 HOH A 19 237 237 HOH HOH . 
E 5 HOH A 20 238 238 HOH HOH . 
E 5 HOH A 21 239 239 HOH HOH . 
E 5 HOH A 22 240 240 HOH HOH . 
E 5 HOH A 23 241 241 HOH HOH . 
E 5 HOH A 24 242 242 HOH HOH . 
E 5 HOH A 25 243 243 HOH HOH . 
E 5 HOH A 26 244 244 HOH HOH . 
E 5 HOH A 27 245 245 HOH HOH . 
E 5 HOH A 28 246 246 HOH HOH . 
E 5 HOH A 29 247 247 HOH HOH . 
E 5 HOH A 30 248 248 HOH HOH . 
E 5 HOH A 31 249 249 HOH HOH . 
E 5 HOH A 32 250 250 HOH HOH . 
E 5 HOH A 33 251 251 HOH HOH . 
E 5 HOH A 34 252 252 HOH HOH . 
E 5 HOH A 35 253 253 HOH HOH . 
E 5 HOH A 36 254 254 HOH HOH . 
E 5 HOH A 37 255 255 HOH HOH . 
E 5 HOH A 38 256 256 HOH HOH . 
E 5 HOH A 39 257 257 HOH HOH . 
E 5 HOH A 40 258 258 HOH HOH . 
E 5 HOH A 41 259 259 HOH HOH . 
E 5 HOH A 42 260 260 HOH HOH . 
E 5 HOH A 43 261 261 HOH HOH . 
E 5 HOH A 44 262 262 HOH HOH . 
E 5 HOH A 45 263 263 HOH HOH . 
E 5 HOH A 46 264 264 HOH HOH . 
E 5 HOH A 47 265 265 HOH HOH . 
E 5 HOH A 48 266 266 HOH HOH . 
E 5 HOH A 49 267 267 HOH HOH . 
E 5 HOH A 50 268 268 HOH HOH . 
E 5 HOH A 51 269 269 HOH HOH . 
E 5 HOH A 52 270 270 HOH HOH . 
E 5 HOH A 53 271 271 HOH HOH . 
E 5 HOH A 54 272 272 HOH HOH . 
E 5 HOH A 55 273 273 HOH HOH . 
E 5 HOH A 56 274 274 HOH HOH . 
E 5 HOH A 57 275 275 HOH HOH . 
E 5 HOH A 58 276 276 HOH HOH . 
E 5 HOH A 59 277 277 HOH HOH . 
E 5 HOH A 60 278 278 HOH HOH . 
E 5 HOH A 61 279 279 HOH HOH . 
E 5 HOH A 62 280 280 HOH HOH . 
E 5 HOH A 63 281 281 HOH HOH . 
E 5 HOH A 64 282 282 HOH HOH . 
E 5 HOH A 65 283 283 HOH HOH . 
E 5 HOH A 66 284 284 HOH HOH . 
E 5 HOH A 67 285 285 HOH HOH . 
E 5 HOH A 68 286 286 HOH HOH . 
E 5 HOH A 69 287 287 HOH HOH . 
E 5 HOH A 70 288 288 HOH HOH . 
E 5 HOH A 71 289 289 HOH HOH . 
E 5 HOH A 72 290 290 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               34.84 
_atom_site.Cartn_y               10.535 
_atom_site.Cartn_z               -3.658 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        32.92 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           218 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#