data_1BYJ # _model_server_result.job_id t6InsdzvYik4uHZm9LkxbQ _model_server_result.datetime_utc '2024-11-30 19:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1byj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":29}' # _entry.id 1BYJ # _exptl.entry_id 1BYJ _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 130.188 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-DIAMINO-CYCLOHEXANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BYJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O1 GE1 . A GE1 28 1_555 C C4 GE2 . A GE2 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 C C2 GE2 . A GE2 29 1_555 D O1 GE3 . A GE3 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 A N3 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 A O2 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 A N4 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 3 A C 3 1_555 A N1 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 3 A C 3 1_555 A O6 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 3 A C 3 1_555 A N2 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 G 4 A G 4 1_555 A N3 C 24 A C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 G 4 A G 4 1_555 A O2 C 24 A C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 G 4 A G 4 1_555 A N4 C 24 A C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 C 6 A C 6 1_555 A N1 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 C 6 A C 6 1_555 A O6 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 C 6 A C 6 1_555 A N2 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 C 8 A C 8 1_555 A N1 G 19 A G 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 C 8 A C 8 1_555 A O6 G 19 A G 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 C 8 A C 8 1_555 A N2 G 19 A G 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog19 A O2 C 8 A C 8 1_555 A N6 A 21 A A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 A 9 A A 9 1_555 A N3 U 18 A U 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N6 A 9 A A 9 1_555 A O4 U 18 A U 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 C 10 A C 10 1_555 A N1 G 17 A G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 C 10 A C 10 1_555 A O6 G 17 A G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 C 10 A C 10 1_555 A N2 G 17 A G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 C 11 A C 11 1_555 A N1 G 16 A G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 C 11 A C 11 1_555 A O6 G 16 A G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 C 11 A C 11 1_555 A N2 G 16 A G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-G MISPAIR' hydrog28 A O2 U 12 A U 12 1_555 A N1 G 15 A G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H14 N2 O' _chem_comp.formula_weight 130.188 _chem_comp.id GE2 _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-DIAMINO-CYCLOHEXANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C GE2 sing 140 n n C5 C4 GE2 sing 141 n n C5 N6 GE2 sing 142 n n C5 H5 GE2 sing 143 n n C C1 GE2 sing 144 n n C H1A GE2 sing 145 n n C H2 GE2 sing 146 n n C1 N1 GE2 sing 147 n n C1 C2 GE2 sing 148 n n C1 H1 GE2 sing 149 n n N1 HN11 GE2 sing 150 n n N1 HN12 GE2 sing 151 n n C2 C3 GE2 sing 152 n n C2 H21 GE2 sing 153 n n C2 H22 GE2 sing 154 n n C3 O32 GE2 sing 155 n n C3 C4 GE2 sing 156 n n C3 H3 GE2 sing 157 n n O32 HOW GE2 sing 158 n n C4 H41 GE2 sing 159 n n C4 H42 GE2 sing 160 n n N6 HN61 GE2 sing 161 n n N6 HN62 GE2 sing 162 n n # _atom_sites.entry_id 1BYJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GE1 A 1 28 28 GE1 GE1 . C 3 GE2 A 1 29 29 GE2 GE2 . D 4 GE3 A 1 30 30 GE3 GE3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 GE2 . . . C 3 8.073 6.281 -3.571 1 0 ? C5 GE2 29 A 1 HETATM 2 C C GE2 . . . C 3 7.415 7.454 -4.342 1 0 ? C GE2 29 A 1 HETATM 3 C C1 GE2 . . . C 3 6.164 7.972 -3.58 1 0 ? C1 GE2 29 A 1 HETATM 4 N N1 GE2 . . . C 3 5.584 9.128 -4.293 1 0 ? N1 GE2 29 A 1 HETATM 5 C C2 GE2 . . . C 3 5.126 6.825 -3.403 1 0 ? C2 GE2 29 A 1 HETATM 6 C C3 GE2 . . . C 3 5.745 5.57 -2.743 1 0 ? C3 GE2 29 A 1 HETATM 7 O O32 GE2 . . . C 3 4.788 4.524 -2.829 1 0 ? O32 GE2 29 A 1 HETATM 8 C C4 GE2 . . . C 3 7.079 5.095 -3.384 1 0 ? C4 GE2 29 A 1 HETATM 9 N N6 GE2 . . . C 3 9.303 5.83 -4.249 1 0 ? N6 GE2 29 A 1 HETATM 10 H H5 GE2 . . . C 3 8.365 6.68 -2.585 1 0 ? H5 GE2 29 A 1 HETATM 11 H H1A GE2 . . . C 3 8.135 8.269 -4.524 1 0 ? H1A GE2 29 A 1 HETATM 12 H H2 GE2 . . . C 3 7.147 7.111 -5.354 1 0 ? H2 GE2 29 A 1 HETATM 13 H H1 GE2 . . . C 3 6.48 8.326 -2.579 1 0 ? H1 GE2 29 A 1 HETATM 14 H HN11 GE2 . . . C 3 6.273 9.886 -4.351 1 0 ? HN11 GE2 29 A 1 HETATM 15 H HN12 GE2 . . . C 3 4.797 9.511 -3.758 1 0 ? HN12 GE2 29 A 1 HETATM 16 H H21 GE2 . . . C 3 4.767 6.539 -4.41 1 0 ? H21 GE2 29 A 1 HETATM 17 H H3 GE2 . . . C 3 5.929 5.79 -1.673 1 0 ? H3 GE2 29 A 1 HETATM 18 H HOW GE2 . . . C 3 3.997 4.852 -2.395 1 0 ? HOW GE2 29 A 1 HETATM 19 H H41 GE2 . . . C 3 6.867 4.65 -4.378 1 0 ? H41 GE2 29 A 1 HETATM 20 H HN61 GE2 . . . C 3 9.734 5.061 -3.723 1 0 ? HN61 GE2 29 A 1 HETATM 21 H HN62 GE2 . . . C 3 9.074 5.441 -5.171 1 0 ? HN62 GE2 29 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 7697 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 21 #