data_1BYZ # _model_server_result.job_id 3AnYL_hKU5bph5sEtjisIA _model_server_result.datetime_utc '2024-10-19 15:32:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1byz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":510}' # _entry.id 1BYZ # _exptl.entry_id 1BYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 102.4 _cell.angle_beta 95.33 _cell.angle_gamma 119.62 _cell.entry_id 1BYZ _cell.length_a 20.846 _cell.length_b 20.909 _cell.length_c 27.057 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 100 1_555 A N GLU 2 A GLU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale2 B C ACE 1 B ACE 200 1_555 B N GLU 2 B GLU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 C C ACE 1 C ACE 300 1_555 C N GLU 2 C GLU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale4 D C ACE 1 D ACE 400 1_555 D N GLU 2 D GLU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 112 n n C1 H1C1 MRD sing 113 n n C1 H1C2 MRD sing 114 n n C1 H1C3 MRD sing 115 n n C2 O2 MRD sing 116 n n C2 CM MRD sing 117 n n C2 C3 MRD sing 118 n n O2 H2 MRD sing 119 n n CM HMC1 MRD sing 120 n n CM HMC2 MRD sing 121 n n CM HMC3 MRD sing 122 n n C3 C4 MRD sing 123 n n C3 H3C1 MRD sing 124 n n C3 H3C2 MRD sing 125 n n C4 O4 MRD sing 126 n n C4 C5 MRD sing 127 n n C4 H4 MRD sing 128 n n O4 HA MRD sing 129 n n C5 H5C1 MRD sing 130 n n C5 H5C2 MRD sing 131 n n C5 H5C3 MRD sing 132 n n # _atom_sites.entry_id 1BYZ _atom_sites.fract_transf_matrix[1][1] 0.047971 _atom_sites.fract_transf_matrix[1][2] 0.027273 _atom_sites.fract_transf_matrix[1][3] 0.013306 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.055015 _atom_sites.fract_transf_matrix[2][3] 0.017373 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.038926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ETA A 1 502 502 ETA ETA . F 3 MPD A 1 513 513 MPD MPD . G 3 MPD B 1 511 511 MPD MPD . H 4 CL C 1 520 520 CL CL . I 2 ETA C 1 501 501 ETA ETA . J 5 MRD D 1 510 510 MRD MPD . K 3 MPD D 1 512 512 MPD MPD . L 6 HOH A 1 602 602 HOH HOH . L 6 HOH A 2 603 603 HOH HOH . L 6 HOH A 3 604 604 HOH HOH . L 6 HOH A 4 605 605 HOH HOH . L 6 HOH A 5 619 619 HOH HOH . L 6 HOH A 6 623 623 HOH HOH . M 6 HOH B 1 606 606 HOH HOH . M 6 HOH B 2 614 614 HOH HOH . M 6 HOH B 3 629 629 HOH HOH . M 6 HOH B 4 630 630 HOH HOH . M 6 HOH B 5 632 632 HOH HOH . M 6 HOH B 6 633 633 HOH HOH . M 6 HOH B 7 634 634 HOH HOH . N 6 HOH C 1 610 610 HOH HOH . N 6 HOH C 2 613 613 HOH HOH . N 6 HOH C 3 616 616 HOH HOH . N 6 HOH C 4 618 618 HOH HOH . N 6 HOH C 5 631 631 HOH HOH . O 6 HOH D 1 601 601 HOH HOH . O 6 HOH D 2 607 607 HOH HOH . O 6 HOH D 3 608 608 HOH HOH . O 6 HOH D 4 609 609 HOH HOH . O 6 HOH D 5 611 611 HOH HOH . O 6 HOH D 6 612 612 HOH HOH . O 6 HOH D 7 615 615 HOH HOH . O 6 HOH D 8 617 617 HOH HOH . O 6 HOH D 9 621 621 HOH HOH . O 6 HOH D 10 624 624 HOH HOH . O 6 HOH D 11 627 627 HOH HOH . O 6 HOH D 12 628 628 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . J 5 -4.358 -0.03 10.812 1 10.78 ? C1 MRD 510 D 1 HETATM 2 C C2 MRD . . . J 5 -4.493 1.429 11.118 1 6.86 ? C2 MRD 510 D 1 HETATM 3 O O2 MRD . . . J 5 -4.591 2.149 9.84 1 7.73 ? O2 MRD 510 D 1 HETATM 4 C CM MRD . . . J 5 -3.301 1.99 11.849 1 11.21 ? CM MRD 510 D 1 HETATM 5 C C3 MRD . . . J 5 -5.743 1.799 11.867 1 6.96 ? C3 MRD 510 D 1 HETATM 6 C C4 MRD . . . J 5 -7.077 1.465 11.313 1 6.44 ? C4 MRD 510 D 1 HETATM 7 O O4 MRD . . . J 5 -7.23 1.962 10.007 1 6.42 ? O4 MRD 510 D 1 HETATM 8 C C5 MRD . . . J 5 -8.236 1.859 12.188 1 6.91 ? C5 MRD 510 D 1 HETATM 9 H H1C1 MRD . . . J 5 -4.287 -0.534 11.649 1 16.16 ? H1C1 MRD 510 D 1 HETATM 10 H H1C2 MRD . . . J 5 -3.553 -0.177 10.272 1 16.16 ? H1C2 MRD 510 D 1 HETATM 11 H H1C3 MRD . . . J 5 -5.145 -0.333 10.313 1 16.16 ? H1C3 MRD 510 D 1 HETATM 12 H H2 MRD . . . J 5 -3.885 2.034 9.399 1 11.6 ? H2 MRD 510 D 1 HETATM 13 H HMC1 MRD . . . J 5 -3.439 2.946 12.016 1 16.81 ? HMC1 MRD 510 D 1 HETATM 14 H HMC2 MRD . . . J 5 -2.496 1.866 11.305 1 16.81 ? HMC2 MRD 510 D 1 HETATM 15 H HMC3 MRD . . . J 5 -3.192 1.522 12.704 1 16.81 ? HMC3 MRD 510 D 1 HETATM 16 H H3C1 MRD . . . J 5 -5.684 1.379 12.761 1 8.36 ? H3C1 MRD 510 D 1 HETATM 17 H H3C2 MRD . . . J 5 -5.722 2.779 12.008 1 8.36 ? H3C2 MRD 510 D 1 HETATM 18 H H4 MRD . . . J 5 -7.108 0.468 11.239 1 7.73 ? H4 MRD 510 D 1 HETATM 19 H HA MRD . . . J 5 -7.986 1.745 9.712 1 9.63 ? HA MRD 510 D 1 HETATM 20 H H5C1 MRD . . . J 5 -9.075 1.596 11.756 1 10.37 ? H5C1 MRD 510 D 1 HETATM 21 H H5C2 MRD . . . J 5 -8.228 2.83 12.323 1 10.37 ? H5C2 MRD 510 D 1 HETATM 22 H H5C3 MRD . . . J 5 -8.159 1.408 13.055 1 10.37 ? H5C3 MRD 510 D 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #