data_1C1C # _model_server_result.job_id jRpZ7nZRkItkV2_nawCL_g _model_server_result.datetime_utc '2025-02-28 13:42:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1C1C # _exptl.entry_id 1C1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.454 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(cyclohexylsulfanyl)-1-(ethoxymethyl)-5-(1-methylethyl)pyrimidine-2,4(1H,3H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment 6-CYCLOHEXYLTHIO-1-ETHOXYMETHYL-5-ISOPROPYLURACIL _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1C1C _cell.length_a 136.8 _cell.length_b 109.5 _cell.length_c 71.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id LEU _struct_conn.ptnr1_label_seq_id 279 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LEU _struct_conn.ptnr1_auth_seq_id 279 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id CSD _struct_conn.ptnr2_label_seq_id 280 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CSD _struct_conn.ptnr2_auth_seq_id 280 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.327 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H26 N2 O3 S' _chem_comp.formula_weight 326.454 _chem_comp.id 612 _chem_comp.mon_nstd_flag . _chem_comp.name 6-(cyclohexylsulfanyl)-1-(ethoxymethyl)-5-(1-methylethyl)pyrimidine-2,4(1H,3H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TNK-6123 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C1 612 sing 1 n n C1 C6 612 sing 2 n n C1 C2 612 sing 3 n n C1 H1 612 sing 4 n n C2 C3 612 sing 5 n n C2 H2 612 sing 6 n n C2 H2A 612 sing 7 n n C3 C4 612 sing 8 n n C3 H3 612 sing 9 n n C3 H3A 612 sing 10 n n C5 C4 612 sing 11 n n C4 H4 612 sing 12 n n C4 H4A 612 sing 13 n n C6 C5 612 sing 14 n n C5 H5 612 sing 15 n n C5 H5A 612 sing 16 n n C6 H6 612 sing 17 n n C6 H6A 612 sing 18 n n C7 S 612 sing 19 n n N8 C7 612 sing 20 n n C12 C7 612 doub 21 n n C11 C12 612 sing 22 n n C12 CF 612 sing 23 n n CF CI 612 sing 24 n n CF CH 612 sing 25 n n CF HF 612 sing 26 n n CH HH 612 sing 27 n n CH HHA 612 sing 28 n n CH HHB 612 sing 29 n n CI HI 612 sing 30 n n CI HIA 612 sing 31 n n CI HIB 612 sing 32 n n O11 C11 612 doub 33 n n N10 C11 612 sing 34 n n C9 N8 612 sing 35 n n N8 CA 612 sing 36 n n O9 C9 612 doub 37 n n N10 C9 612 sing 38 n n N10 HN10 612 sing 39 n n CA OB 612 sing 40 n n CA HA 612 sing 41 n n CA HAA 612 sing 42 n n CC OB 612 sing 43 n n CC CD 612 sing 44 n n CC HC 612 sing 45 n n CC HCA 612 sing 46 n n CD HD 612 sing 47 n n CD HDA 612 sing 48 n n CD HDB 612 sing 49 n n # _atom_sites.entry_id 1C1C _atom_sites.fract_transf_matrix[1][1] 0.00731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 612 A 1 999 999 612 612 . D 4 HOH A 1 1000 1000 HOH WAT . D 4 HOH A 2 1001 1001 HOH WAT . D 4 HOH A 3 1002 1002 HOH WAT . D 4 HOH A 4 1003 1003 HOH WAT . D 4 HOH A 5 1006 1006 HOH WAT . D 4 HOH A 6 1007 1007 HOH WAT . D 4 HOH A 7 1008 1008 HOH WAT . D 4 HOH A 8 1009 1009 HOH WAT . D 4 HOH A 9 1011 1011 HOH WAT . D 4 HOH A 10 1012 1012 HOH WAT . D 4 HOH A 11 1013 1013 HOH WAT . D 4 HOH A 12 1014 1014 HOH WAT . D 4 HOH A 13 1015 1015 HOH WAT . D 4 HOH A 14 1016 1016 HOH WAT . D 4 HOH A 15 1017 1017 HOH WAT . D 4 HOH A 16 1019 1019 HOH WAT . D 4 HOH A 17 1021 1021 HOH WAT . D 4 HOH A 18 1022 1022 HOH WAT . D 4 HOH A 19 1023 1023 HOH WAT . D 4 HOH A 20 1024 1024 HOH WAT . D 4 HOH A 21 1025 1025 HOH WAT . D 4 HOH A 22 1027 1027 HOH WAT . D 4 HOH A 23 1028 1028 HOH WAT . D 4 HOH A 24 1029 1029 HOH WAT . D 4 HOH A 25 1030 1030 HOH WAT . D 4 HOH A 26 1031 1031 HOH WAT . D 4 HOH A 27 1033 1033 HOH WAT . D 4 HOH A 28 1034 1034 HOH WAT . D 4 HOH A 29 1035 1035 HOH WAT . D 4 HOH A 30 1036 1036 HOH WAT . D 4 HOH A 31 1037 1037 HOH WAT . D 4 HOH A 32 1038 1038 HOH WAT . D 4 HOH A 33 1039 1039 HOH WAT . D 4 HOH A 34 1040 1040 HOH WAT . D 4 HOH A 35 1041 1041 HOH WAT . D 4 HOH A 36 1042 1042 HOH WAT . D 4 HOH A 37 1043 1043 HOH WAT . D 4 HOH A 38 1044 1044 HOH WAT . D 4 HOH A 39 1045 1045 HOH WAT . D 4 HOH A 40 1046 1046 HOH WAT . D 4 HOH A 41 1047 1047 HOH WAT . D 4 HOH A 42 1049 1049 HOH WAT . D 4 HOH A 43 1050 1050 HOH WAT . D 4 HOH A 44 1051 1051 HOH WAT . D 4 HOH A 45 1052 1052 HOH WAT . D 4 HOH A 46 1053 1053 HOH WAT . D 4 HOH A 47 1054 1054 HOH WAT . D 4 HOH A 48 1055 1055 HOH WAT . D 4 HOH A 49 1056 1056 HOH WAT . D 4 HOH A 50 1057 1057 HOH WAT . D 4 HOH A 51 1058 1058 HOH WAT . D 4 HOH A 52 1059 1059 HOH WAT . D 4 HOH A 53 1060 1060 HOH WAT . D 4 HOH A 54 1061 1061 HOH WAT . D 4 HOH A 55 1062 1062 HOH WAT . D 4 HOH A 56 1063 1063 HOH WAT . D 4 HOH A 57 1064 1064 HOH WAT . D 4 HOH A 58 1065 1065 HOH WAT . D 4 HOH A 59 1066 1066 HOH WAT . D 4 HOH A 60 1067 1067 HOH WAT . D 4 HOH A 61 1068 1068 HOH WAT . D 4 HOH A 62 1069 1069 HOH WAT . D 4 HOH A 63 1070 1070 HOH WAT . D 4 HOH A 64 1071 1071 HOH WAT . D 4 HOH A 65 1072 1072 HOH WAT . D 4 HOH A 66 1073 1073 HOH WAT . D 4 HOH A 67 1074 1074 HOH WAT . D 4 HOH A 68 1075 1075 HOH WAT . D 4 HOH A 69 1076 1076 HOH WAT . D 4 HOH A 70 1098 1098 HOH WAT . D 4 HOH A 71 1100 1100 HOH WAT . D 4 HOH A 72 1101 1101 HOH WAT . D 4 HOH A 73 1119 1119 HOH WAT . D 4 HOH A 74 1122 1122 HOH WAT . D 4 HOH A 75 1126 1126 HOH WAT . D 4 HOH A 76 1127 1127 HOH WAT . D 4 HOH A 77 1128 1128 HOH WAT . D 4 HOH A 78 1129 1129 HOH WAT . D 4 HOH A 79 1130 1130 HOH WAT . D 4 HOH A 80 1131 1131 HOH WAT . D 4 HOH A 81 1132 1132 HOH WAT . D 4 HOH A 82 1133 1133 HOH WAT . D 4 HOH A 83 1134 1134 HOH WAT . D 4 HOH A 84 1135 1135 HOH WAT . D 4 HOH A 85 1136 1136 HOH WAT . D 4 HOH A 86 1137 1137 HOH WAT . D 4 HOH A 87 1138 1138 HOH WAT . D 4 HOH A 88 1139 1139 HOH WAT . D 4 HOH A 89 1140 1140 HOH WAT . D 4 HOH A 90 1141 1141 HOH WAT . D 4 HOH A 91 1142 1142 HOH WAT . D 4 HOH A 92 1143 1143 HOH WAT . D 4 HOH A 93 1144 1144 HOH WAT . D 4 HOH A 94 1145 1145 HOH WAT . D 4 HOH A 95 1146 1146 HOH WAT . E 4 HOH B 1 1004 1004 HOH WAT . E 4 HOH B 2 1005 1005 HOH WAT . E 4 HOH B 3 1077 1077 HOH WAT . E 4 HOH B 4 1078 1078 HOH WAT . E 4 HOH B 5 1081 1081 HOH WAT . E 4 HOH B 6 1082 1082 HOH WAT . E 4 HOH B 7 1083 1083 HOH WAT . E 4 HOH B 8 1084 1084 HOH WAT . E 4 HOH B 9 1085 1085 HOH WAT . E 4 HOH B 10 1086 1086 HOH WAT . E 4 HOH B 11 1087 1087 HOH WAT . E 4 HOH B 12 1090 1090 HOH WAT . E 4 HOH B 13 1091 1091 HOH WAT . E 4 HOH B 14 1092 1092 HOH WAT . E 4 HOH B 15 1093 1093 HOH WAT . E 4 HOH B 16 1094 1094 HOH WAT . E 4 HOH B 17 1095 1095 HOH WAT . E 4 HOH B 18 1096 1096 HOH WAT . E 4 HOH B 19 1097 1097 HOH WAT . E 4 HOH B 20 1099 1099 HOH WAT . E 4 HOH B 21 1102 1102 HOH WAT . E 4 HOH B 22 1103 1103 HOH WAT . E 4 HOH B 23 1104 1104 HOH WAT . E 4 HOH B 24 1105 1105 HOH WAT . E 4 HOH B 25 1106 1106 HOH WAT . E 4 HOH B 26 1107 1107 HOH WAT . E 4 HOH B 27 1108 1108 HOH WAT . E 4 HOH B 28 1109 1109 HOH WAT . E 4 HOH B 29 1110 1110 HOH WAT . E 4 HOH B 30 1111 1111 HOH WAT . E 4 HOH B 31 1112 1112 HOH WAT . E 4 HOH B 32 1113 1113 HOH WAT . E 4 HOH B 33 1114 1114 HOH WAT . E 4 HOH B 34 1115 1115 HOH WAT . E 4 HOH B 35 1116 1116 HOH WAT . E 4 HOH B 36 1117 1117 HOH WAT . E 4 HOH B 37 1118 1118 HOH WAT . E 4 HOH B 38 1120 1120 HOH WAT . E 4 HOH B 39 1121 1121 HOH WAT . E 4 HOH B 40 1123 1123 HOH WAT . E 4 HOH B 41 1124 1124 HOH WAT . E 4 HOH B 42 1147 1147 HOH WAT . E 4 HOH B 43 1148 1148 HOH WAT . E 4 HOH B 44 1149 1149 HOH WAT . E 4 HOH B 45 1150 1150 HOH WAT . E 4 HOH B 46 1151 1151 HOH WAT . E 4 HOH B 47 1152 1152 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 612 . . . C 3 -1.262 -32.674 26.375 1 32.95 ? C1 612 999 A 1 HETATM 2 C C2 612 . . . C 3 -1.713 -32.267 27.77 1 34.65 ? C2 612 999 A 1 HETATM 3 C C3 612 . . . C 3 -0.879 -31.128 28.295 1 27.76 ? C3 612 999 A 1 HETATM 4 C C4 612 . . . C 3 0.601 -31.498 28.297 1 29.08 ? C4 612 999 A 1 HETATM 5 C C5 612 . . . C 3 1.05 -31.889 26.895 1 28.74 ? C5 612 999 A 1 HETATM 6 C C6 612 . . . C 3 0.215 -33.043 26.385 1 30.82 ? C6 612 999 A 1 HETATM 7 S S 612 . . . C 3 -2.233 -34.169 25.97 1 32.26 ? S 612 999 A 1 HETATM 8 C C7 612 . . . C 3 -2.282 -34.353 24.12 1 18.06 ? C7 612 999 A 1 HETATM 9 C C12 612 . . . C 3 -1.472 -35.273 23.469 1 14.61 ? C12 612 999 A 1 HETATM 10 C CF 612 . . . C 3 -0.703 -36.408 24.171 1 10.07 ? CF 612 999 A 1 HETATM 11 C CH 612 . . . C 3 -1.546 -37.269 25.082 1 14.61 ? CH 612 999 A 1 HETATM 12 C CI 612 . . . C 3 0.594 -35.979 24.767 1 17.14 ? CI 612 999 A 1 HETATM 13 C C11 612 . . . C 3 -1.473 -35.33 22.017 1 18.65 ? C11 612 999 A 1 HETATM 14 O O11 612 . . . C 3 -0.75 -36.073 21.366 1 19.51 ? O11 612 999 A 1 HETATM 15 N N8 612 . . . C 3 -3.122 -33.491 23.39 1 19.76 ? N8 612 999 A 1 HETATM 16 C C9 612 . . . C 3 -3.173 -33.519 21.982 1 23.47 ? C9 612 999 A 1 HETATM 17 O O9 612 . . . C 3 -3.916 -32.788 21.33 1 22.87 ? O9 612 999 A 1 HETATM 18 N N10 612 . . . C 3 -2.332 -34.437 21.371 1 16.93 ? N10 612 999 A 1 HETATM 19 C CA 612 . . . C 3 -4.043 -32.534 24.054 1 21.69 ? CA 612 999 A 1 HETATM 20 O OB 612 . . . C 3 -5.078 -33.204 24.765 1 29.12 ? OB 612 999 A 1 HETATM 21 C CC 612 . . . C 3 -6.32 -33.159 24.056 1 25.28 ? CC 612 999 A 1 HETATM 22 C CD 612 . . . C 3 -7.436 -33.735 24.892 1 18.82 ? CD 612 999 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #