data_1C1J # _model_server_result.job_id aDYxNddfbHHvRE8mUJu17w _model_server_result.datetime_utc '2025-04-10 16:58:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 1C1J # _exptl.entry_id 1C1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.59 _cell.angle_gamma 90 _cell.entry_id 1C1J _cell.length_a 100.18 _cell.length_b 54.01 _cell.length_c 108.49 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C1J _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,K,L,M,P 1 1 B,C,H,I,J,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 122 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 26 B CYS 27 1_555 B SG CYS 115 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 B SG CYS 28 B CYS 29 1_555 B SG CYS 44 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 43 B CYS 44 1_555 B SG CYS 95 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 B SG CYS 49 B CYS 50 1_555 B SG CYS 122 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 B SG CYS 50 B CYS 51 1_555 B SG CYS 88 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 B SG CYS 57 B CYS 61 1_555 B SG CYS 81 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf14 B SG CYS 75 B CYS 84 1_555 B SG CYS 86 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf15 C SG CYS 26 C CYS 27 1_555 C SG CYS 115 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf16 C SG CYS 28 C CYS 29 1_555 C SG CYS 44 C CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 C SG CYS 43 C CYS 44 1_555 C SG CYS 95 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf18 C SG CYS 49 C CYS 50 1_555 C SG CYS 122 C CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf19 C SG CYS 50 C CYS 51 1_555 C SG CYS 88 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf20 C SG CYS 57 C CYS 61 1_555 C SG CYS 81 C CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf21 C SG CYS 75 C CYS 84 1_555 C SG CYS 86 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf22 D SG CYS 26 D CYS 27 1_555 D SG CYS 115 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf23 D SG CYS 28 D CYS 29 1_555 D SG CYS 44 D CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf24 D SG CYS 43 D CYS 44 1_555 D SG CYS 95 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf25 D SG CYS 49 D CYS 50 1_555 D SG CYS 122 D CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf26 D SG CYS 50 D CYS 51 1_555 D SG CYS 88 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf27 D SG CYS 57 D CYS 61 1_555 D SG CYS 81 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf28 D SG CYS 75 D CYS 84 1_555 D SG CYS 86 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A O GLY 25 A GLY 26 1_555 G CD CD . A CD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc2 A ND1 HIS 47 A HIS 48 1_555 F CD CD . A CD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc3 A OD2 ASP 48 A ASP 49 1_555 F CD CD . A CD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc4 A OD1 ASP 112 A ASP 122 1_555 G CD CD . A CD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc5 F CD CD . A CD 601 1_555 M O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc6 F CD CD . A CD 601 1_555 M O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc7 B ND1 HIS 47 B HIS 48 1_555 I CD CD . B CD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc8 B OD2 ASP 48 B ASP 49 1_555 I CD CD . B CD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc9 I CD CD . B CD 602 1_555 N O HOH . B HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc10 C ND1 HIS 47 C HIS 48 1_555 J CD CD . C CD 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc11 C OD2 ASP 48 C ASP 49 1_555 J CD CD . C CD 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc12 J CD CD . C CD 134 1_555 O O HOH . C HOH 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc13 D ND1 HIS 47 D HIS 48 1_555 K CD CD . D CD 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc14 D OD2 ASP 48 D ASP 49 1_555 K CD CD . D CD 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc15 D OD1 ASP 112 D ASP 122 1_555 L CD CD . D CD 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc16 K CD CD . D CD 134 1_555 P O HOH . D HOH 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc17 K CD CD . D CD 134 1_555 P O HOH . D HOH 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1C1J _atom_sites.fract_transf_matrix[1][1] 0.009982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00395 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BOG A 1 600 600 BOG BOG . F 3 CD A 1 601 100 CD ICD . G 3 CD A 1 602 104 CD ICD . H 2 BOG B 1 601 601 BOG BOG . I 3 CD B 1 602 101 CD ICD . J 3 CD C 1 134 102 CD ICD . K 3 CD D 1 134 103 CD ICD . L 3 CD D 1 135 105 CD ICD . M 4 HOH A 1 603 4 HOH TIP . M 4 HOH A 2 604 5 HOH TIP . M 4 HOH A 3 605 8 HOH TIP . M 4 HOH A 4 606 9 HOH TIP . M 4 HOH A 5 607 10 HOH TIP . M 4 HOH A 6 608 11 HOH TIP . M 4 HOH A 7 609 13 HOH TIP . M 4 HOH A 8 610 25 HOH TIP . M 4 HOH A 9 611 26 HOH TIP . M 4 HOH A 10 612 27 HOH TIP . M 4 HOH A 11 613 32 HOH TIP . M 4 HOH A 12 614 35 HOH TIP . M 4 HOH A 13 615 39 HOH TIP . M 4 HOH A 14 616 41 HOH TIP . M 4 HOH A 15 617 42 HOH TIP . N 4 HOH B 1 603 1 HOH TIP . N 4 HOH B 2 604 2 HOH TIP . N 4 HOH B 3 605 12 HOH TIP . N 4 HOH B 4 606 14 HOH TIP . N 4 HOH B 5 607 23 HOH TIP . N 4 HOH B 6 608 24 HOH TIP . N 4 HOH B 7 609 40 HOH TIP . N 4 HOH B 8 610 47 HOH TIP . O 4 HOH C 1 135 3 HOH TIP . O 4 HOH C 2 136 7 HOH TIP . O 4 HOH C 3 137 15 HOH TIP . O 4 HOH C 4 138 16 HOH TIP . O 4 HOH C 5 139 30 HOH TIP . O 4 HOH C 6 140 33 HOH TIP . O 4 HOH C 7 141 36 HOH TIP . O 4 HOH C 8 142 38 HOH TIP . O 4 HOH C 9 143 43 HOH TIP . O 4 HOH C 10 144 44 HOH TIP . O 4 HOH C 11 145 45 HOH TIP . O 4 HOH C 12 146 46 HOH TIP . P 4 HOH D 1 136 6 HOH TIP . P 4 HOH D 2 137 17 HOH TIP . P 4 HOH D 3 138 18 HOH TIP . P 4 HOH D 4 139 19 HOH TIP . P 4 HOH D 5 140 20 HOH TIP . P 4 HOH D 6 141 21 HOH TIP . P 4 HOH D 7 142 22 HOH TIP . P 4 HOH D 8 143 28 HOH TIP . P 4 HOH D 9 144 29 HOH TIP . P 4 HOH D 10 145 31 HOH TIP . P 4 HOH D 11 146 34 HOH TIP . P 4 HOH D 12 147 37 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . H 2 44.465 -1.129 35.293 1 52.23 ? C1 BOG 601 B 1 HETATM 2 O O1 BOG . . . H 2 43.643 -0.456 36.183 1 51.14 ? O1 BOG 601 B 1 HETATM 3 C C2 BOG . . . H 2 45.926 -0.934 35.73 1 55.44 ? C2 BOG 601 B 1 HETATM 4 O O2 BOG . . . H 2 46.291 0.424 35.54 1 56.48 ? O2 BOG 601 B 1 HETATM 5 C C3 BOG . . . H 2 46.871 -1.843 34.931 1 55.14 ? C3 BOG 601 B 1 HETATM 6 O O3 BOG . . . H 2 48.19 -1.731 35.44 1 59.62 ? O3 BOG 601 B 1 HETATM 7 C C4 BOG . . . H 2 46.398 -3.296 35.023 1 52.33 ? C4 BOG 601 B 1 HETATM 8 O O4 BOG . . . H 2 47.247 -4.141 34.259 1 43.43 ? O4 BOG 601 B 1 HETATM 9 C C5 BOG . . . H 2 44.959 -3.358 34.503 1 55.16 ? C5 BOG 601 B 1 HETATM 10 O O5 BOG . . . H 2 44.106 -2.523 35.334 1 53.63 ? O5 BOG 601 B 1 HETATM 11 C C6 BOG . . . H 2 44.354 -4.763 34.463 1 55.46 ? C6 BOG 601 B 1 HETATM 12 O O6 BOG . . . H 2 44.037 -5.245 35.763 1 50.04 ? O6 BOG 601 B 1 HETATM 13 C C1' BOG . . . H 2 42.609 0.382 35.641 1 51.42 ? C1' BOG 601 B 1 HETATM 14 C C2' BOG . . . H 2 41.242 -0.236 35.935 1 51.7 ? C2' BOG 601 B 1 HETATM 15 C C3' BOG . . . H 2 40.117 0.747 35.61 1 52.98 ? C3' BOG 601 B 1 HETATM 16 C C4' BOG . . . H 2 38.844 -0.017 35.243 1 49.66 ? C4' BOG 601 B 1 HETATM 17 C C5' BOG . . . H 2 38.105 0.698 34.111 1 53.62 ? C5' BOG 601 B 1 HETATM 18 C C6' BOG . . . H 2 37.484 -0.303 33.132 1 54.95 ? C6' BOG 601 B 1 HETATM 19 C C7' BOG . . . H 2 38.563 -1.072 32.358 1 53.19 ? C7' BOG 601 B 1 HETATM 20 C C8' BOG . . . H 2 37.936 -2.03 31.344 1 50.8 ? C8' BOG 601 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #