data_1C1N # _model_server_result.job_id LuxE8C_94w8Lqid5UJ5W9A _model_server_result.datetime_utc '2024-11-21 22:10:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":246}' # _entry.id 1C1N # _exptl.entry_id 1C1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1C1N _cell.length_a 54.83 _cell.length_b 54.83 _cell.length_c 109.24 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc1 A NE2 HIS 40 A HIS 57 1_555 C ZN ZN . A ZN 409 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc6 A OG SER 177 A SER 195 1_555 C ZN ZN . A ZN 409 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.166 ? metalc ? metalc7 B CA CA . A CA 247 1_555 F O HOH . A HOH 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc8 B CA CA . A CA 247 1_555 F O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc9 F O HOH . A HOH 337 1_555 C ZN ZN . A ZN 409 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.606 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 1C1N _atom_sites.fract_transf_matrix[1][1] 0.018238 _atom_sites.fract_transf_matrix[1][2] 0.01053 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 247 247 CA CA . C 3 ZN A 1 409 409 ZN ZN . D 4 SO4 A 1 467 467 SO4 SO4 . E 5 BEN A 1 246 246 BEN BDN . F 6 HOH A 1 248 248 HOH HOH . F 6 HOH A 2 249 249 HOH HOH . F 6 HOH A 3 250 250 HOH HOH . F 6 HOH A 4 251 251 HOH HOH . F 6 HOH A 5 252 252 HOH HOH . F 6 HOH A 6 253 253 HOH HOH . F 6 HOH A 7 254 254 HOH HOH . F 6 HOH A 8 255 255 HOH HOH . F 6 HOH A 9 256 256 HOH HOH . F 6 HOH A 10 257 257 HOH HOH . F 6 HOH A 11 258 258 HOH HOH . F 6 HOH A 12 259 259 HOH HOH . F 6 HOH A 13 260 260 HOH HOH . F 6 HOH A 14 261 261 HOH HOH . F 6 HOH A 15 262 262 HOH HOH . F 6 HOH A 16 263 263 HOH HOH . F 6 HOH A 17 264 264 HOH HOH . F 6 HOH A 18 265 265 HOH HOH . F 6 HOH A 19 266 266 HOH HOH . F 6 HOH A 20 267 267 HOH HOH . F 6 HOH A 21 268 268 HOH HOH . F 6 HOH A 22 269 269 HOH HOH . F 6 HOH A 23 270 270 HOH HOH . F 6 HOH A 24 271 271 HOH HOH . F 6 HOH A 25 272 272 HOH HOH . F 6 HOH A 26 273 273 HOH HOH . F 6 HOH A 27 274 274 HOH HOH . F 6 HOH A 28 275 275 HOH HOH . F 6 HOH A 29 276 276 HOH HOH . F 6 HOH A 30 277 277 HOH HOH . F 6 HOH A 31 278 278 HOH HOH . F 6 HOH A 32 279 279 HOH HOH . F 6 HOH A 33 280 280 HOH HOH . F 6 HOH A 34 281 281 HOH HOH . F 6 HOH A 35 282 282 HOH HOH . F 6 HOH A 36 283 283 HOH HOH . F 6 HOH A 37 284 284 HOH HOH . F 6 HOH A 38 285 285 HOH HOH . F 6 HOH A 39 286 286 HOH HOH . F 6 HOH A 40 287 287 HOH HOH . F 6 HOH A 41 288 288 HOH HOH . F 6 HOH A 42 289 289 HOH HOH . F 6 HOH A 43 290 290 HOH HOH . F 6 HOH A 44 291 291 HOH HOH . F 6 HOH A 45 292 292 HOH HOH . F 6 HOH A 46 293 293 HOH HOH . F 6 HOH A 47 294 294 HOH HOH . F 6 HOH A 48 295 295 HOH HOH . F 6 HOH A 49 297 297 HOH HOH . F 6 HOH A 50 298 298 HOH HOH . F 6 HOH A 51 299 299 HOH HOH . F 6 HOH A 52 300 300 HOH HOH . F 6 HOH A 53 301 301 HOH HOH . F 6 HOH A 54 302 302 HOH HOH . F 6 HOH A 55 304 304 HOH HOH . F 6 HOH A 56 305 305 HOH HOH . F 6 HOH A 57 306 306 HOH HOH . F 6 HOH A 58 307 307 HOH HOH . F 6 HOH A 59 308 308 HOH HOH . F 6 HOH A 60 309 309 HOH HOH . F 6 HOH A 61 310 310 HOH HOH . F 6 HOH A 62 311 311 HOH HOH . F 6 HOH A 63 312 312 HOH HOH . F 6 HOH A 64 313 313 HOH HOH . F 6 HOH A 65 314 314 HOH HOH . F 6 HOH A 66 315 315 HOH HOH . F 6 HOH A 67 316 316 HOH HOH . F 6 HOH A 68 317 317 HOH HOH . F 6 HOH A 69 318 318 HOH HOH . F 6 HOH A 70 319 319 HOH HOH . F 6 HOH A 71 320 320 HOH HOH . F 6 HOH A 72 321 321 HOH HOH . F 6 HOH A 73 322 322 HOH HOH . F 6 HOH A 74 323 323 HOH HOH . F 6 HOH A 75 324 324 HOH HOH . F 6 HOH A 76 325 325 HOH HOH . F 6 HOH A 77 328 328 HOH HOH . F 6 HOH A 78 330 330 HOH HOH . F 6 HOH A 79 332 332 HOH HOH . F 6 HOH A 80 333 333 HOH HOH . F 6 HOH A 81 334 334 HOH HOH . F 6 HOH A 82 335 335 HOH HOH . F 6 HOH A 83 336 336 HOH HOH . F 6 HOH A 84 337 337 HOH HOH . F 6 HOH A 85 338 338 HOH HOH . F 6 HOH A 86 339 339 HOH HOH . F 6 HOH A 87 340 340 HOH HOH . F 6 HOH A 88 341 341 HOH HOH . F 6 HOH A 89 342 342 HOH HOH . F 6 HOH A 90 343 343 HOH HOH . F 6 HOH A 91 344 344 HOH HOH . F 6 HOH A 92 345 345 HOH HOH . F 6 HOH A 93 346 346 HOH HOH . F 6 HOH A 94 348 348 HOH HOH . F 6 HOH A 95 349 349 HOH HOH . F 6 HOH A 96 350 350 HOH HOH . F 6 HOH A 97 351 351 HOH HOH . F 6 HOH A 98 355 355 HOH HOH . F 6 HOH A 99 356 356 HOH HOH . F 6 HOH A 100 357 357 HOH HOH . F 6 HOH A 101 358 358 HOH HOH . F 6 HOH A 102 359 359 HOH HOH . F 6 HOH A 103 361 361 HOH HOH . F 6 HOH A 104 362 362 HOH HOH . F 6 HOH A 105 363 363 HOH HOH . F 6 HOH A 106 364 364 HOH HOH . F 6 HOH A 107 366 366 HOH HOH . F 6 HOH A 108 367 367 HOH HOH . F 6 HOH A 109 370 370 HOH HOH . F 6 HOH A 110 373 373 HOH HOH . F 6 HOH A 111 374 374 HOH HOH . F 6 HOH A 112 376 376 HOH HOH . F 6 HOH A 113 378 378 HOH HOH . F 6 HOH A 114 379 379 HOH HOH . F 6 HOH A 115 380 380 HOH HOH . F 6 HOH A 116 381 381 HOH HOH . F 6 HOH A 117 382 382 HOH HOH . F 6 HOH A 118 383 383 HOH HOH . F 6 HOH A 119 385 385 HOH HOH . F 6 HOH A 120 386 386 HOH HOH . F 6 HOH A 121 387 387 HOH HOH . F 6 HOH A 122 390 390 HOH HOH . F 6 HOH A 123 392 392 HOH HOH . F 6 HOH A 124 393 393 HOH HOH . F 6 HOH A 125 395 395 HOH HOH . F 6 HOH A 126 396 396 HOH HOH . F 6 HOH A 127 397 397 HOH HOH . F 6 HOH A 128 398 398 HOH HOH . F 6 HOH A 129 399 399 HOH HOH . F 6 HOH A 130 400 400 HOH HOH . F 6 HOH A 131 401 401 HOH HOH . F 6 HOH A 132 402 402 HOH HOH . F 6 HOH A 133 403 403 HOH HOH . F 6 HOH A 134 404 404 HOH HOH . F 6 HOH A 135 406 406 HOH HOH . F 6 HOH A 136 407 407 HOH HOH . F 6 HOH A 137 414 414 HOH HOH . F 6 HOH A 138 415 415 HOH HOH . F 6 HOH A 139 416 416 HOH HOH . F 6 HOH A 140 417 417 HOH HOH . F 6 HOH A 141 418 418 HOH HOH . F 6 HOH A 142 419 419 HOH HOH . F 6 HOH A 143 423 423 HOH HOH . F 6 HOH A 144 429 429 HOH HOH . F 6 HOH A 145 430 430 HOH HOH . F 6 HOH A 146 435 435 HOH HOH . F 6 HOH A 147 436 436 HOH HOH . F 6 HOH A 148 439 439 HOH HOH . F 6 HOH A 149 440 440 HOH HOH . F 6 HOH A 150 442 442 HOH HOH . F 6 HOH A 151 444 444 HOH HOH . F 6 HOH A 152 445 445 HOH HOH . F 6 HOH A 153 448 448 HOH HOH . F 6 HOH A 154 449 449 HOH HOH . F 6 HOH A 155 450 450 HOH HOH . F 6 HOH A 156 451 451 HOH HOH . F 6 HOH A 157 452 452 HOH HOH . F 6 HOH A 158 453 453 HOH HOH . F 6 HOH A 159 455 455 HOH HOH . F 6 HOH A 160 456 456 HOH HOH . F 6 HOH A 161 457 457 HOH HOH . F 6 HOH A 162 466 466 HOH HOH . F 6 HOH A 163 471 471 HOH HOH . F 6 HOH A 164 479 479 HOH HOH . F 6 HOH A 165 489 489 HOH HOH . F 6 HOH A 166 490 490 HOH HOH . F 6 HOH A 167 500 500 HOH HOH . F 6 HOH A 168 501 501 HOH HOH . F 6 HOH A 169 508 508 HOH HOH . F 6 HOH A 170 511 511 HOH HOH . F 6 HOH A 171 512 512 HOH HOH . F 6 HOH A 172 519 519 HOH HOH . F 6 HOH A 173 520 520 HOH HOH . F 6 HOH A 174 523 523 HOH HOH . F 6 HOH A 175 527 527 HOH HOH . F 6 HOH A 176 532 532 HOH HOH . F 6 HOH A 177 533 533 HOH HOH . F 6 HOH A 178 536 536 HOH HOH . F 6 HOH A 179 550 550 HOH HOH . F 6 HOH A 180 553 553 HOH HOH . F 6 HOH A 181 579 579 HOH HOH . F 6 HOH A 182 594 594 HOH HOH . F 6 HOH A 183 605 605 HOH HOH . F 6 HOH A 184 606 606 HOH HOH . F 6 HOH A 185 611 611 HOH HOH . F 6 HOH A 186 612 612 HOH HOH . F 6 HOH A 187 617 617 HOH HOH . F 6 HOH A 188 623 623 HOH HOH . F 6 HOH A 189 624 624 HOH HOH . F 6 HOH A 190 627 627 HOH HOH . F 6 HOH A 191 629 629 HOH HOH . F 6 HOH A 192 631 631 HOH HOH . F 6 HOH A 193 636 636 HOH HOH . F 6 HOH A 194 638 638 HOH HOH . F 6 HOH A 195 646 646 HOH HOH . F 6 HOH A 196 652 652 HOH HOH . F 6 HOH A 197 662 662 HOH HOH . F 6 HOH A 198 664 664 HOH HOH . F 6 HOH A 199 667 667 HOH HOH . F 6 HOH A 200 675 675 HOH HOH . F 6 HOH A 201 677 677 HOH HOH . F 6 HOH A 202 681 681 HOH HOH . F 6 HOH A 203 686 686 HOH HOH . F 6 HOH A 204 688 688 HOH HOH . F 6 HOH A 205 697 697 HOH HOH . F 6 HOH A 206 699 699 HOH HOH . F 6 HOH A 207 734 734 HOH HOH . F 6 HOH A 208 735 735 HOH HOH . F 6 HOH A 209 736 736 HOH HOH . F 6 HOH A 210 737 737 HOH HOH . F 6 HOH A 211 738 738 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . E 5 45.438 19.306 52.818 0.66 20.6 ? C1 BEN 246 A 1 HETATM 2 C C2 BEN . . . E 5 44.932 18.872 51.572 0.66 20.12 ? C2 BEN 246 A 1 HETATM 3 C C3 BEN . . . E 5 44.596 19.771 50.565 0.66 19.33 ? C3 BEN 246 A 1 HETATM 4 C C4 BEN . . . E 5 44.754 21.133 50.769 0.66 20.92 ? C4 BEN 246 A 1 HETATM 5 C C5 BEN . . . E 5 45.249 21.605 51.979 0.66 20.18 ? C5 BEN 246 A 1 HETATM 6 C C6 BEN . . . E 5 45.584 20.707 52.986 0.66 20.46 ? C6 BEN 246 A 1 HETATM 7 C C BEN . . . E 5 45.771 18.399 53.848 0.66 21.56 ? C BEN 246 A 1 HETATM 8 N N1 BEN . . . E 5 45.349 17.161 53.801 0.66 20.42 ? N1 BEN 246 A 1 HETATM 9 N N2 BEN . . . E 5 46.512 18.807 54.845 0.66 21.43 ? N2 BEN 246 A 1 HETATM 10 H H1 BEN . . . E 5 45.561 16.508 54.514 0.66 21.87 ? H1 BEN 246 A 1 HETATM 11 H H2 BEN . . . E 5 44.797 17.819 51.385 0.66 19.44 ? H2 BEN 246 A 1 HETATM 12 H H3 BEN . . . E 5 44.211 19.414 49.623 0.66 17.72 ? H3 BEN 246 A 1 HETATM 13 H H4 BEN . . . E 5 44.49 21.825 49.985 0.66 20.63 ? H4 BEN 246 A 1 HETATM 14 H H5 BEN . . . E 5 45.367 22.666 52.134 0.66 21.04 ? H5 BEN 246 A 1 HETATM 15 H H6 BEN . . . E 5 45.963 21.105 53.914 0.66 18.88 ? H6 BEN 246 A 1 HETATM 16 H HN1 BEN . . . E 5 44.822 16.829 53 0.66 21.26 ? HN1 BEN 246 A 1 HETATM 17 H HN21 BEN . . . E 5 46.867 19.748 54.835 0.66 21.69 ? HN21 BEN 246 A 1 HETATM 18 H HN22 BEN . . . E 5 46.714 18.267 55.66 0.66 21.68 ? HN22 BEN 246 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #