data_1C1R # _model_server_result.job_id 9-vZpnkvzUNUCCnoSVrNzA _model_server_result.datetime_utc '2024-11-01 10:29:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":333}' # _entry.id 1C1R # _exptl.entry_id 1C1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1C1R _cell.length_a 54.86 _cell.length_b 54.86 _cell.length_c 109.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OE1 GLN 15 A GLN 30 1_555 C MG MG . A MG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.071 ? metalc ? metalc2 A NE2 HIS 40 A HIS 57 1_555 E ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc6 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc7 A O SER 119 A SER 139 1_555 C MG MG . A MG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc8 A O ASP 176 A ASP 194 1_555 C MG MG . A MG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc9 A OG SER 177 A SER 195 1_555 E ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 F N3 BAI . A BAI 246 1_555 E ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 F N4' BAI . A BAI 246 1_555 E ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc12 B CA CA . A CA 247 1_555 H O HOH . A HOH 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc13 B CA CA . A CA 247 1_555 H O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc14 H O HOH . A HOH 250 1_555 C MG MG . A MG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 122 n n S C1 DMS sing 123 n n S C2 DMS sing 124 n n C1 H11 DMS sing 125 n n C1 H12 DMS sing 126 n n C1 H13 DMS sing 127 n n C2 H21 DMS sing 128 n n C2 H22 DMS sing 129 n n C2 H23 DMS sing 130 n n # _atom_sites.entry_id 1C1R _atom_sites.fract_transf_matrix[1][1] 0.018228 _atom_sites.fract_transf_matrix[1][2] 0.010524 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 247 247 CA CA . C 3 MG A 1 263 263 MG MG . D 4 SO4 A 1 355 355 SO4 SO4 . E 5 ZN A 1 409 409 ZN ZN . F 6 BAI A 1 246 246 BAI BAI . G 7 DMS A 1 333 333 DMS DMS . H 8 HOH A 1 248 248 HOH HOH . H 8 HOH A 2 249 249 HOH HOH . H 8 HOH A 3 250 250 HOH HOH . H 8 HOH A 4 251 251 HOH HOH . H 8 HOH A 5 252 252 HOH HOH . H 8 HOH A 6 253 253 HOH HOH . H 8 HOH A 7 254 254 HOH HOH . H 8 HOH A 8 255 255 HOH HOH . H 8 HOH A 9 256 256 HOH HOH . H 8 HOH A 10 257 257 HOH HOH . H 8 HOH A 11 258 258 HOH HOH . H 8 HOH A 12 259 259 HOH HOH . H 8 HOH A 13 260 260 HOH HOH . H 8 HOH A 14 261 261 HOH HOH . H 8 HOH A 15 262 262 HOH HOH . H 8 HOH A 16 264 264 HOH HOH . H 8 HOH A 17 265 265 HOH HOH . H 8 HOH A 18 266 266 HOH HOH . H 8 HOH A 19 267 267 HOH HOH . H 8 HOH A 20 268 268 HOH HOH . H 8 HOH A 21 269 269 HOH HOH . H 8 HOH A 22 270 270 HOH HOH . H 8 HOH A 23 271 271 HOH HOH . H 8 HOH A 24 272 272 HOH HOH . H 8 HOH A 25 273 273 HOH HOH . H 8 HOH A 26 274 274 HOH HOH . H 8 HOH A 27 275 275 HOH HOH . H 8 HOH A 28 276 276 HOH HOH . H 8 HOH A 29 277 277 HOH HOH . H 8 HOH A 30 278 278 HOH HOH . H 8 HOH A 31 279 279 HOH HOH . H 8 HOH A 32 280 280 HOH HOH . H 8 HOH A 33 281 281 HOH HOH . H 8 HOH A 34 282 282 HOH HOH . H 8 HOH A 35 283 283 HOH HOH . H 8 HOH A 36 284 284 HOH HOH . H 8 HOH A 37 285 285 HOH HOH . H 8 HOH A 38 286 286 HOH HOH . H 8 HOH A 39 287 287 HOH HOH . H 8 HOH A 40 288 288 HOH HOH . H 8 HOH A 41 289 289 HOH HOH . H 8 HOH A 42 290 290 HOH HOH . H 8 HOH A 43 291 291 HOH HOH . H 8 HOH A 44 292 292 HOH HOH . H 8 HOH A 45 293 293 HOH HOH . H 8 HOH A 46 294 294 HOH HOH . H 8 HOH A 47 295 295 HOH HOH . H 8 HOH A 48 296 296 HOH HOH . H 8 HOH A 49 297 297 HOH HOH . H 8 HOH A 50 298 298 HOH HOH . H 8 HOH A 51 299 299 HOH HOH . H 8 HOH A 52 300 300 HOH HOH . H 8 HOH A 53 301 301 HOH HOH . H 8 HOH A 54 302 302 HOH HOH . H 8 HOH A 55 304 304 HOH HOH . H 8 HOH A 56 305 305 HOH HOH . H 8 HOH A 57 306 306 HOH HOH . H 8 HOH A 58 307 307 HOH HOH . H 8 HOH A 59 308 308 HOH HOH . H 8 HOH A 60 309 309 HOH HOH . H 8 HOH A 61 310 310 HOH HOH . H 8 HOH A 62 311 311 HOH HOH . H 8 HOH A 63 312 312 HOH HOH . H 8 HOH A 64 313 313 HOH HOH . H 8 HOH A 65 314 314 HOH HOH . H 8 HOH A 66 315 315 HOH HOH . H 8 HOH A 67 316 316 HOH HOH . H 8 HOH A 68 317 317 HOH HOH . H 8 HOH A 69 318 318 HOH HOH . H 8 HOH A 70 319 319 HOH HOH . H 8 HOH A 71 320 320 HOH HOH . H 8 HOH A 72 321 321 HOH HOH . H 8 HOH A 73 322 322 HOH HOH . H 8 HOH A 74 323 323 HOH HOH . H 8 HOH A 75 324 324 HOH HOH . H 8 HOH A 76 325 325 HOH HOH . H 8 HOH A 77 326 326 HOH HOH . H 8 HOH A 78 330 330 HOH HOH . H 8 HOH A 79 334 334 HOH HOH . H 8 HOH A 80 335 335 HOH HOH . H 8 HOH A 81 336 336 HOH HOH . H 8 HOH A 82 337 337 HOH HOH . H 8 HOH A 83 338 338 HOH HOH . H 8 HOH A 84 339 339 HOH HOH . H 8 HOH A 85 340 340 HOH HOH . H 8 HOH A 86 342 342 HOH HOH . H 8 HOH A 87 343 343 HOH HOH . H 8 HOH A 88 344 344 HOH HOH . H 8 HOH A 89 345 345 HOH HOH . H 8 HOH A 90 346 346 HOH HOH . H 8 HOH A 91 347 347 HOH HOH . H 8 HOH A 92 348 348 HOH HOH . H 8 HOH A 93 349 349 HOH HOH . H 8 HOH A 94 351 351 HOH HOH . H 8 HOH A 95 356 356 HOH HOH . H 8 HOH A 96 357 357 HOH HOH . H 8 HOH A 97 358 358 HOH HOH . H 8 HOH A 98 359 359 HOH HOH . H 8 HOH A 99 360 360 HOH HOH . H 8 HOH A 100 362 362 HOH HOH . H 8 HOH A 101 363 363 HOH HOH . H 8 HOH A 102 365 365 HOH HOH . H 8 HOH A 103 366 366 HOH HOH . H 8 HOH A 104 373 373 HOH HOH . H 8 HOH A 105 374 374 HOH HOH . H 8 HOH A 106 376 376 HOH HOH . H 8 HOH A 107 378 378 HOH HOH . H 8 HOH A 108 379 379 HOH HOH . H 8 HOH A 109 380 380 HOH HOH . H 8 HOH A 110 381 381 HOH HOH . H 8 HOH A 111 382 382 HOH HOH . H 8 HOH A 112 383 383 HOH HOH . H 8 HOH A 113 384 384 HOH HOH . H 8 HOH A 114 386 386 HOH HOH . H 8 HOH A 115 387 387 HOH HOH . H 8 HOH A 116 390 390 HOH HOH . H 8 HOH A 117 392 392 HOH HOH . H 8 HOH A 118 394 394 HOH HOH . H 8 HOH A 119 395 395 HOH HOH . H 8 HOH A 120 396 396 HOH HOH . H 8 HOH A 121 397 397 HOH HOH . H 8 HOH A 122 398 398 HOH HOH . H 8 HOH A 123 400 400 HOH HOH . H 8 HOH A 124 401 401 HOH HOH . H 8 HOH A 125 402 402 HOH HOH . H 8 HOH A 126 403 403 HOH HOH . H 8 HOH A 127 404 404 HOH HOH . H 8 HOH A 128 405 405 HOH HOH . H 8 HOH A 129 406 406 HOH HOH . H 8 HOH A 130 407 407 HOH HOH . H 8 HOH A 131 410 410 HOH HOH . H 8 HOH A 132 411 411 HOH HOH . H 8 HOH A 133 412 412 HOH HOH . H 8 HOH A 134 423 423 HOH HOH . H 8 HOH A 135 427 427 HOH HOH . H 8 HOH A 136 429 429 HOH HOH . H 8 HOH A 137 430 430 HOH HOH . H 8 HOH A 138 431 431 HOH HOH . H 8 HOH A 139 434 434 HOH HOH . H 8 HOH A 140 436 436 HOH HOH . H 8 HOH A 141 437 437 HOH HOH . H 8 HOH A 142 438 438 HOH HOH . H 8 HOH A 143 439 439 HOH HOH . H 8 HOH A 144 440 440 HOH HOH . H 8 HOH A 145 442 442 HOH HOH . H 8 HOH A 146 443 443 HOH HOH . H 8 HOH A 147 444 444 HOH HOH . H 8 HOH A 148 445 445 HOH HOH . H 8 HOH A 149 446 446 HOH HOH . H 8 HOH A 150 449 449 HOH HOH . H 8 HOH A 151 455 455 HOH HOH . H 8 HOH A 152 457 457 HOH HOH . H 8 HOH A 153 471 471 HOH HOH . H 8 HOH A 154 479 479 HOH HOH . H 8 HOH A 155 489 489 HOH HOH . H 8 HOH A 156 500 500 HOH HOH . H 8 HOH A 157 501 501 HOH HOH . H 8 HOH A 158 505 505 HOH HOH . H 8 HOH A 159 512 512 HOH HOH . H 8 HOH A 160 519 519 HOH HOH . H 8 HOH A 161 523 523 HOH HOH . H 8 HOH A 162 527 527 HOH HOH . H 8 HOH A 163 529 529 HOH HOH . H 8 HOH A 164 533 533 HOH HOH . H 8 HOH A 165 536 536 HOH HOH . H 8 HOH A 166 538 538 HOH HOH . H 8 HOH A 167 542 542 HOH HOH . H 8 HOH A 168 547 547 HOH HOH . H 8 HOH A 169 550 550 HOH HOH . H 8 HOH A 170 553 553 HOH HOH . H 8 HOH A 171 594 594 HOH HOH . H 8 HOH A 172 601 601 HOH HOH . H 8 HOH A 173 604 604 HOH HOH . H 8 HOH A 174 625 625 HOH HOH . H 8 HOH A 175 639 639 HOH HOH . H 8 HOH A 176 676 676 HOH HOH . H 8 HOH A 177 681 681 HOH HOH . H 8 HOH A 178 691 691 HOH HOH . H 8 HOH A 179 692 692 HOH HOH . H 8 HOH A 180 693 693 HOH HOH . H 8 HOH A 181 697 697 HOH HOH . H 8 HOH A 182 699 699 HOH HOH . H 8 HOH A 183 703 703 HOH HOH . H 8 HOH A 184 704 704 HOH HOH . H 8 HOH A 185 708 708 HOH HOH . H 8 HOH A 186 711 711 HOH HOH . H 8 HOH A 187 715 715 HOH HOH . H 8 HOH A 188 720 720 HOH HOH . H 8 HOH A 189 743 743 HOH HOH . H 8 HOH A 190 753 753 HOH HOH . H 8 HOH A 191 754 754 HOH HOH . H 8 HOH A 192 758 758 HOH HOH . H 8 HOH A 193 761 761 HOH HOH . H 8 HOH A 194 775 775 HOH HOH . H 8 HOH A 195 797 797 HOH HOH . H 8 HOH A 196 800 800 HOH HOH . H 8 HOH A 197 804 804 HOH HOH . H 8 HOH A 198 807 807 HOH HOH . H 8 HOH A 199 810 810 HOH HOH . H 8 HOH A 200 820 820 HOH HOH . H 8 HOH A 201 827 827 HOH HOH . H 8 HOH A 202 836 836 HOH HOH . H 8 HOH A 203 849 849 HOH HOH . H 8 HOH A 204 862 862 HOH HOH . H 8 HOH A 205 870 870 HOH HOH . H 8 HOH A 206 878 878 HOH HOH . H 8 HOH A 207 879 879 HOH HOH . H 8 HOH A 208 880 880 HOH HOH . H 8 HOH A 209 881 881 HOH HOH . H 8 HOH A 210 882 882 HOH HOH . H 8 HOH A 211 883 883 HOH HOH . H 8 HOH A 212 884 884 HOH HOH . H 8 HOH A 213 885 885 HOH HOH . H 8 HOH A 214 886 886 HOH HOH . H 8 HOH A 215 888 888 HOH HOH . H 8 HOH A 216 889 889 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 7 37.736 25.309 56.954 1 63.08 ? S DMS 333 A 1 HETATM 2 O O DMS . . . G 7 36.844 26.043 56.384 1 64.26 ? O DMS 333 A 1 HETATM 3 C C1 DMS . . . G 7 37.026 23.695 57.359 1 60.69 ? C1 DMS 333 A 1 HETATM 4 C C2 DMS . . . G 7 39.012 24.83 55.756 1 61.4 ? C2 DMS 333 A 1 HETATM 5 H H11 DMS . . . G 7 36.156 23.818 57.981 1 60.06 ? H11 DMS 333 A 1 HETATM 6 H H12 DMS . . . G 7 36.751 23.167 56.457 1 59.25 ? H12 DMS 333 A 1 HETATM 7 H H13 DMS . . . G 7 37.764 23.142 57.905 1 60.14 ? H13 DMS 333 A 1 HETATM 8 H H21 DMS . . . G 7 39.484 25.719 55.36 1 60.58 ? H21 DMS 333 A 1 HETATM 9 H H22 DMS . . . G 7 39.761 24.23 56.251 1 60.79 ? H22 DMS 333 A 1 HETATM 10 H H23 DMS . . . G 7 38.576 24.266 54.945 1 59.26 ? H23 DMS 333 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #