data_1C1V # _model_server_result.job_id Rcel3t2Baf0Fvx-95pS0oQ _model_server_result.datetime_utc '2024-11-08 15:53:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":409}' # _entry.id 1C1V # _exptl.entry_id 1C1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.51 _cell.angle_gamma 90 _cell.entry_id 1C1V _cell.length_a 72.47 _cell.length_b 72.09 _cell.length_c 73.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 173 H CYS 173 1_555 B SG CYS 187 H CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 201 H CYS 197 1_555 B SG CYS 231 H CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? covale ? covale1 C C GLU 8 I GLU 62 1_555 C N TYS 9 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale2 C C TYS 9 I TYS 63 1_555 C N LEU 10 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? metalc ? metalc1 B NE2 HIS 43 H HIS 57 1_555 D ZN ZN . H ZN 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 B OG SER 205 H SER 201 1_555 D ZN ZN . H ZN 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 B O ARG 233 H ARG 227 1_555 F NA NA . H NA 409 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc4 B O LYS 236 H LYS 230 1_555 F NA NA . H NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 D ZN ZN . H ZN 254 1_555 G N3' BAB . H BAB 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc6 D ZN ZN . H ZN 254 1_555 G N3 BAB . H BAB 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 E ZN ZN . H ZN 255 1_555 G N4 BAB . H BAB 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc8 F NA NA . H NA 409 1_555 I O HOH . H HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc9 F NA NA . H NA 409 1_555 I O HOH . H HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc10 F NA NA . H NA 409 1_555 I O HOH . H HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc11 F NA NA . H NA 409 1_555 I O HOH . H HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1C1V _atom_sites.fract_transf_matrix[1][1] 0.013799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00281 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN H 1 254 247 ZN ZN . E 4 ZN H 1 255 248 ZN ZN . F 5 NA H 1 409 409 NA NA . G 6 BAB H 1 410 246 BAB BAB . H 7 HOH L 1 390 390 HOH HOH . H 7 HOH L 2 391 391 HOH HOH . H 7 HOH L 3 439 439 HOH HOH . H 7 HOH L 4 440 440 HOH HOH . H 7 HOH L 5 449 449 HOH HOH . H 7 HOH L 6 465 465 HOH HOH . H 7 HOH L 7 470 470 HOH HOH . H 7 HOH L 8 474 474 HOH HOH . H 7 HOH L 9 485 485 HOH HOH . H 7 HOH L 10 511 511 HOH HOH . H 7 HOH L 11 517 517 HOH HOH . H 7 HOH L 12 534 534 HOH HOH . H 7 HOH L 13 540 540 HOH HOH . H 7 HOH L 14 552 552 HOH HOH . H 7 HOH L 15 557 557 HOH HOH . H 7 HOH L 16 560 560 HOH HOH . H 7 HOH L 17 575 575 HOH HOH . H 7 HOH L 18 599 599 HOH HOH . H 7 HOH L 19 672 672 HOH HOH . H 7 HOH L 20 687 687 HOH HOH . H 7 HOH L 21 697 697 HOH HOH . H 7 HOH L 22 698 698 HOH HOH . H 7 HOH L 23 699 699 HOH HOH . H 7 HOH L 24 701 701 HOH HOH . H 7 HOH L 25 703 703 HOH HOH . H 7 HOH L 26 704 704 HOH HOH . H 7 HOH L 27 706 706 HOH HOH . H 7 HOH L 28 709 709 HOH HOH . H 7 HOH L 29 727 727 HOH HOH . H 7 HOH L 30 746 746 HOH HOH . H 7 HOH L 31 757 757 HOH HOH . H 7 HOH L 32 759 759 HOH HOH . H 7 HOH L 33 764 764 HOH HOH . H 7 HOH L 34 798 798 HOH HOH . H 7 HOH L 35 831 831 HOH HOH . I 7 HOH H 1 411 389 HOH HOH . I 7 HOH H 2 412 395 HOH HOH . I 7 HOH H 3 413 396 HOH HOH . I 7 HOH H 4 414 401 HOH HOH . I 7 HOH H 5 415 402 HOH HOH . I 7 HOH H 6 416 403 HOH HOH . I 7 HOH H 7 417 404 HOH HOH . I 7 HOH H 8 418 405 HOH HOH . I 7 HOH H 9 419 406 HOH HOH . I 7 HOH H 10 420 407 HOH HOH . I 7 HOH H 11 421 408 HOH HOH . I 7 HOH H 12 422 410 HOH HOH . I 7 HOH H 13 423 411 HOH HOH . I 7 HOH H 14 424 412 HOH HOH . I 7 HOH H 15 425 413 HOH HOH . I 7 HOH H 16 426 414 HOH HOH . I 7 HOH H 17 427 415 HOH HOH . I 7 HOH H 18 428 416 HOH HOH . I 7 HOH H 19 429 417 HOH HOH . I 7 HOH H 20 430 418 HOH HOH . I 7 HOH H 21 431 419 HOH HOH . I 7 HOH H 22 432 420 HOH HOH . I 7 HOH H 23 433 421 HOH HOH . I 7 HOH H 24 434 422 HOH HOH . I 7 HOH H 25 435 423 HOH HOH . I 7 HOH H 26 436 424 HOH HOH . I 7 HOH H 27 437 425 HOH HOH . I 7 HOH H 28 438 426 HOH HOH . I 7 HOH H 29 439 427 HOH HOH . I 7 HOH H 30 440 428 HOH HOH . I 7 HOH H 31 441 430 HOH HOH . I 7 HOH H 32 442 431 HOH HOH . I 7 HOH H 33 443 432 HOH HOH . I 7 HOH H 34 444 433 HOH HOH . I 7 HOH H 35 445 435 HOH HOH . I 7 HOH H 36 446 436 HOH HOH . I 7 HOH H 37 447 437 HOH HOH . I 7 HOH H 38 448 438 HOH HOH . I 7 HOH H 39 449 442 HOH HOH . I 7 HOH H 40 450 443 HOH HOH . I 7 HOH H 41 451 444 HOH HOH . I 7 HOH H 42 452 445 HOH HOH . I 7 HOH H 43 453 446 HOH HOH . I 7 HOH H 44 454 447 HOH HOH . I 7 HOH H 45 455 450 HOH HOH . I 7 HOH H 46 456 451 HOH HOH . I 7 HOH H 47 457 452 HOH HOH . I 7 HOH H 48 458 454 HOH HOH . I 7 HOH H 49 459 455 HOH HOH . I 7 HOH H 50 460 456 HOH HOH . I 7 HOH H 51 461 457 HOH HOH . I 7 HOH H 52 462 458 HOH HOH . I 7 HOH H 53 463 459 HOH HOH . I 7 HOH H 54 464 460 HOH HOH . I 7 HOH H 55 465 461 HOH HOH . I 7 HOH H 56 466 463 HOH HOH . I 7 HOH H 57 467 464 HOH HOH . I 7 HOH H 58 468 466 HOH HOH . I 7 HOH H 59 469 467 HOH HOH . I 7 HOH H 60 470 469 HOH HOH . I 7 HOH H 61 471 471 HOH HOH . I 7 HOH H 62 472 473 HOH HOH . I 7 HOH H 63 473 476 HOH HOH . I 7 HOH H 64 474 477 HOH HOH . I 7 HOH H 65 475 479 HOH HOH . I 7 HOH H 66 476 480 HOH HOH . I 7 HOH H 67 477 481 HOH HOH . I 7 HOH H 68 478 482 HOH HOH . I 7 HOH H 69 479 484 HOH HOH . I 7 HOH H 70 480 486 HOH HOH . I 7 HOH H 71 481 487 HOH HOH . I 7 HOH H 72 482 488 HOH HOH . I 7 HOH H 73 483 489 HOH HOH . I 7 HOH H 74 484 490 HOH HOH . I 7 HOH H 75 485 491 HOH HOH . I 7 HOH H 76 486 492 HOH HOH . I 7 HOH H 77 487 493 HOH HOH . I 7 HOH H 78 488 495 HOH HOH . I 7 HOH H 79 489 496 HOH HOH . I 7 HOH H 80 490 498 HOH HOH . I 7 HOH H 81 491 500 HOH HOH . I 7 HOH H 82 492 501 HOH HOH . I 7 HOH H 83 493 503 HOH HOH . I 7 HOH H 84 494 505 HOH HOH . I 7 HOH H 85 495 506 HOH HOH . I 7 HOH H 86 496 507 HOH HOH . I 7 HOH H 87 497 509 HOH HOH . I 7 HOH H 88 498 510 HOH HOH . I 7 HOH H 89 499 512 HOH HOH . I 7 HOH H 90 500 513 HOH HOH . I 7 HOH H 91 501 514 HOH HOH . I 7 HOH H 92 502 515 HOH HOH . I 7 HOH H 93 503 516 HOH HOH . I 7 HOH H 94 504 520 HOH HOH . I 7 HOH H 95 505 523 HOH HOH . I 7 HOH H 96 506 525 HOH HOH . I 7 HOH H 97 507 527 HOH HOH . I 7 HOH H 98 508 528 HOH HOH . I 7 HOH H 99 509 530 HOH HOH . I 7 HOH H 100 510 532 HOH HOH . I 7 HOH H 101 511 535 HOH HOH . I 7 HOH H 102 512 536 HOH HOH . I 7 HOH H 103 513 537 HOH HOH . I 7 HOH H 104 514 541 HOH HOH . I 7 HOH H 105 515 542 HOH HOH . I 7 HOH H 106 516 544 HOH HOH . I 7 HOH H 107 517 546 HOH HOH . I 7 HOH H 108 518 547 HOH HOH . I 7 HOH H 109 519 549 HOH HOH . I 7 HOH H 110 520 551 HOH HOH . I 7 HOH H 111 521 553 HOH HOH . I 7 HOH H 112 522 554 HOH HOH . I 7 HOH H 113 523 555 HOH HOH . I 7 HOH H 114 524 558 HOH HOH . I 7 HOH H 115 525 562 HOH HOH . I 7 HOH H 116 526 563 HOH HOH . I 7 HOH H 117 527 565 HOH HOH . I 7 HOH H 118 528 566 HOH HOH . I 7 HOH H 119 529 567 HOH HOH . I 7 HOH H 120 530 568 HOH HOH . I 7 HOH H 121 531 569 HOH HOH . I 7 HOH H 122 532 570 HOH HOH . I 7 HOH H 123 533 571 HOH HOH . I 7 HOH H 124 534 573 HOH HOH . I 7 HOH H 125 535 574 HOH HOH . I 7 HOH H 126 536 576 HOH HOH . I 7 HOH H 127 537 577 HOH HOH . I 7 HOH H 128 538 582 HOH HOH . I 7 HOH H 129 539 583 HOH HOH . I 7 HOH H 130 540 584 HOH HOH . I 7 HOH H 131 541 601 HOH HOH . I 7 HOH H 132 542 605 HOH HOH . I 7 HOH H 133 543 614 HOH HOH . I 7 HOH H 134 544 615 HOH HOH . I 7 HOH H 135 545 619 HOH HOH . I 7 HOH H 136 546 620 HOH HOH . I 7 HOH H 137 547 631 HOH HOH . I 7 HOH H 138 548 665 HOH HOH . I 7 HOH H 139 549 667 HOH HOH . I 7 HOH H 140 550 673 HOH HOH . I 7 HOH H 141 551 679 HOH HOH . I 7 HOH H 142 552 680 HOH HOH . I 7 HOH H 143 553 683 HOH HOH . I 7 HOH H 144 554 692 HOH HOH . I 7 HOH H 145 555 695 HOH HOH . I 7 HOH H 146 556 702 HOH HOH . I 7 HOH H 147 557 705 HOH HOH . I 7 HOH H 148 558 708 HOH HOH . I 7 HOH H 149 559 710 HOH HOH . I 7 HOH H 150 560 714 HOH HOH . I 7 HOH H 151 561 715 HOH HOH . I 7 HOH H 152 562 716 HOH HOH . I 7 HOH H 153 563 718 HOH HOH . I 7 HOH H 154 564 719 HOH HOH . I 7 HOH H 155 565 722 HOH HOH . I 7 HOH H 156 566 723 HOH HOH . I 7 HOH H 157 567 724 HOH HOH . I 7 HOH H 158 568 725 HOH HOH . I 7 HOH H 159 569 726 HOH HOH . I 7 HOH H 160 570 729 HOH HOH . I 7 HOH H 161 571 731 HOH HOH . I 7 HOH H 162 572 732 HOH HOH . I 7 HOH H 163 573 734 HOH HOH . I 7 HOH H 164 574 738 HOH HOH . I 7 HOH H 165 575 739 HOH HOH . I 7 HOH H 166 576 741 HOH HOH . I 7 HOH H 167 577 742 HOH HOH . I 7 HOH H 168 578 744 HOH HOH . I 7 HOH H 169 579 745 HOH HOH . I 7 HOH H 170 580 747 HOH HOH . I 7 HOH H 171 581 755 HOH HOH . I 7 HOH H 172 582 756 HOH HOH . I 7 HOH H 173 583 758 HOH HOH . I 7 HOH H 174 584 766 HOH HOH . I 7 HOH H 175 585 767 HOH HOH . I 7 HOH H 176 586 779 HOH HOH . I 7 HOH H 177 587 782 HOH HOH . I 7 HOH H 178 588 783 HOH HOH . I 7 HOH H 179 589 784 HOH HOH . I 7 HOH H 180 590 786 HOH HOH . I 7 HOH H 181 591 787 HOH HOH . I 7 HOH H 182 592 789 HOH HOH . I 7 HOH H 183 593 793 HOH HOH . I 7 HOH H 184 594 795 HOH HOH . I 7 HOH H 185 595 796 HOH HOH . I 7 HOH H 186 596 808 HOH HOH . I 7 HOH H 187 597 811 HOH HOH . I 7 HOH H 188 598 815 HOH HOH . I 7 HOH H 189 599 816 HOH HOH . I 7 HOH H 190 600 817 HOH HOH . I 7 HOH H 191 601 818 HOH HOH . I 7 HOH H 192 602 819 HOH HOH . I 7 HOH H 193 603 820 HOH HOH . I 7 HOH H 194 604 822 HOH HOH . I 7 HOH H 195 605 823 HOH HOH . I 7 HOH H 196 606 824 HOH HOH . I 7 HOH H 197 607 825 HOH HOH . I 7 HOH H 198 608 827 HOH HOH . I 7 HOH H 199 609 829 HOH HOH . I 7 HOH H 200 610 830 HOH HOH . I 7 HOH H 201 611 832 HOH HOH . I 7 HOH H 202 612 833 HOH HOH . I 7 HOH H 203 613 834 HOH HOH . I 7 HOH H 204 614 835 HOH HOH . I 7 HOH H 205 615 837 HOH HOH . I 7 HOH H 206 616 839 HOH HOH . I 7 HOH H 207 617 840 HOH HOH . I 7 HOH H 208 618 841 HOH HOH . I 7 HOH H 209 619 842 HOH HOH . I 7 HOH H 210 620 843 HOH HOH . I 7 HOH H 211 621 844 HOH HOH . I 7 HOH H 212 622 845 HOH HOH . I 7 HOH H 213 623 846 HOH HOH . I 7 HOH H 214 624 847 HOH HOH . I 7 HOH H 215 625 848 HOH HOH . I 7 HOH H 216 626 849 HOH HOH . J 7 HOH I 1 434 434 HOH HOH . J 7 HOH I 2 499 499 HOH HOH . J 7 HOH I 3 597 597 HOH HOH . J 7 HOH I 4 644 644 HOH HOH . J 7 HOH I 5 666 666 HOH HOH . J 7 HOH I 6 675 675 HOH HOH . J 7 HOH I 7 733 733 HOH HOH . J 7 HOH I 8 735 735 HOH HOH . J 7 HOH I 9 737 737 HOH HOH . J 7 HOH I 10 765 765 HOH HOH . J 7 HOH I 11 790 790 HOH HOH . J 7 HOH I 12 792 792 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 5.883 _atom_site.Cartn_y -14.13 _atom_site.Cartn_z 30.673 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 409 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #