data_1C1Y # _model_server_result.job_id GdEIJQeISYiB95fdiwQBmQ _model_server_result.datetime_utc '2024-11-21 22:55:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":170}' # _entry.id 1C1Y # _exptl.entry_id 1C1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1C1Y _cell.length_a 44.17 _cell.length_b 71.88 _cell.length_c 100.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc3 D O2G GTP . A GTP 170 1_555 C MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc4 D O2B GTP . A GTP 170 1_555 C MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc5 C MG MG . A MG 171 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 C MG MG . A MG 171 1_555 F O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 B OD1 ASP 26 B ASP 80 4_556 E CA CA . B CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc8 B OD2 ASP 26 B ASP 80 4_556 E CA CA . B CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc9 B O GLY 69 B GLY 123 1_555 E CA CA . B CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc10 B OE1 GLU 71 B GLU 125 1_555 E CA CA . B CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc11 B OE2 GLU 71 B GLU 125 1_555 E CA CA . B CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc12 E CA CA . B CA 173 1_555 G O HOH . B HOH 405 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc13 E CA CA . B CA 173 1_555 G O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc14 E CA CA . B CA 173 1_555 G O HOH . B HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 1C1Y _atom_sites.fract_transf_matrix[1][1] 0.02264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 171 171 MG MG . D 4 GTP A 1 170 170 GTP GTP . E 5 CA B 1 173 173 CA CA . F 6 HOH A 1 401 401 HOH HOH . F 6 HOH A 2 402 402 HOH HOH . F 6 HOH A 3 404 404 HOH HOH . F 6 HOH A 4 406 406 HOH HOH . F 6 HOH A 5 407 407 HOH HOH . F 6 HOH A 6 408 408 HOH HOH . F 6 HOH A 7 412 412 HOH HOH . F 6 HOH A 8 415 415 HOH HOH . F 6 HOH A 9 421 421 HOH HOH . F 6 HOH A 10 422 422 HOH HOH . F 6 HOH A 11 424 424 HOH HOH . F 6 HOH A 12 425 425 HOH HOH . F 6 HOH A 13 427 427 HOH HOH . F 6 HOH A 14 428 428 HOH HOH . F 6 HOH A 15 429 429 HOH HOH . F 6 HOH A 16 431 431 HOH HOH . F 6 HOH A 17 432 432 HOH HOH . F 6 HOH A 18 436 436 HOH HOH . F 6 HOH A 19 437 437 HOH HOH . F 6 HOH A 20 438 438 HOH HOH . F 6 HOH A 21 439 439 HOH HOH . F 6 HOH A 22 440 440 HOH HOH . F 6 HOH A 23 441 441 HOH HOH . F 6 HOH A 24 442 442 HOH HOH . F 6 HOH A 25 443 443 HOH HOH . F 6 HOH A 26 444 444 HOH HOH . F 6 HOH A 27 448 448 HOH HOH . F 6 HOH A 28 449 449 HOH HOH . F 6 HOH A 29 452 452 HOH HOH . F 6 HOH A 30 454 454 HOH HOH . F 6 HOH A 31 456 456 HOH HOH . F 6 HOH A 32 459 459 HOH HOH . F 6 HOH A 33 461 461 HOH HOH . F 6 HOH A 34 462 462 HOH HOH . F 6 HOH A 35 463 463 HOH HOH . F 6 HOH A 36 464 464 HOH HOH . F 6 HOH A 37 467 467 HOH HOH . F 6 HOH A 38 468 468 HOH HOH . F 6 HOH A 39 469 469 HOH HOH . F 6 HOH A 40 471 471 HOH HOH . F 6 HOH A 41 474 474 HOH HOH . F 6 HOH A 42 475 475 HOH HOH . F 6 HOH A 43 477 477 HOH HOH . F 6 HOH A 44 478 478 HOH HOH . F 6 HOH A 45 480 480 HOH HOH . F 6 HOH A 46 482 482 HOH HOH . F 6 HOH A 47 483 483 HOH HOH . G 6 HOH B 1 403 403 HOH HOH . G 6 HOH B 2 405 405 HOH HOH . G 6 HOH B 3 409 409 HOH HOH . G 6 HOH B 4 410 410 HOH HOH . G 6 HOH B 5 411 411 HOH HOH . G 6 HOH B 6 413 413 HOH HOH . G 6 HOH B 7 414 414 HOH HOH . G 6 HOH B 8 416 416 HOH HOH . G 6 HOH B 9 417 417 HOH HOH . G 6 HOH B 10 418 418 HOH HOH . G 6 HOH B 11 419 419 HOH HOH . G 6 HOH B 12 420 420 HOH HOH . G 6 HOH B 13 423 423 HOH HOH . G 6 HOH B 14 426 426 HOH HOH . G 6 HOH B 15 430 430 HOH HOH . G 6 HOH B 16 433 433 HOH HOH . G 6 HOH B 17 434 434 HOH HOH . G 6 HOH B 18 435 435 HOH HOH . G 6 HOH B 19 445 445 HOH HOH . G 6 HOH B 20 446 446 HOH HOH . G 6 HOH B 21 447 447 HOH HOH . G 6 HOH B 22 450 450 HOH HOH . G 6 HOH B 23 451 451 HOH HOH . G 6 HOH B 24 453 453 HOH HOH . G 6 HOH B 25 455 455 HOH HOH . G 6 HOH B 26 457 457 HOH HOH . G 6 HOH B 27 458 458 HOH HOH . G 6 HOH B 28 460 460 HOH HOH . G 6 HOH B 29 465 465 HOH HOH . G 6 HOH B 30 466 466 HOH HOH . G 6 HOH B 31 470 470 HOH HOH . G 6 HOH B 32 472 472 HOH HOH . G 6 HOH B 33 473 473 HOH HOH . G 6 HOH B 34 476 476 HOH HOH . G 6 HOH B 35 479 479 HOH HOH . G 6 HOH B 36 481 481 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 1.386 27.429 32.3 1 28.77 ? PG GTP 170 A 1 HETATM 2 O O1G GTP . . . D 4 0.775 28.445 33.219 1 29.37 ? O1G GTP 170 A 1 HETATM 3 O O2G GTP . . . D 4 1.326 26.071 32.869 1 28.18 ? O2G GTP 170 A 1 HETATM 4 O O3G GTP . . . D 4 2.879 27.877 32.133 1 27.42 ? O3G GTP 170 A 1 HETATM 5 O O3B GTP . . . D 4 0.661 27.606 30.789 1 28.06 ? O3B GTP 170 A 1 HETATM 6 P PB GTP . . . D 4 0.701 26.491 29.588 1 25.52 ? PB GTP 170 A 1 HETATM 7 O O1B GTP . . . D 4 1.894 26.858 28.828 1 25.75 ? O1B GTP 170 A 1 HETATM 8 O O2B GTP . . . D 4 0.799 25.16 30.098 1 24.27 ? O2B GTP 170 A 1 HETATM 9 O O3A GTP . . . D 4 -0.562 26.518 28.625 1 26.4 ? O3A GTP 170 A 1 HETATM 10 P PA GTP . . . D 4 -1.986 25.662 28.728 1 28.35 ? PA GTP 170 A 1 HETATM 11 O O1A GTP . . . D 4 -1.788 24.376 27.987 1 28.06 ? O1A GTP 170 A 1 HETATM 12 O O2A GTP . . . D 4 -2.575 25.697 30.073 1 27.81 ? O2A GTP 170 A 1 HETATM 13 O O5' GTP . . . D 4 -3.016 26.461 27.838 1 27.92 ? O5' GTP 170 A 1 HETATM 14 C C5' GTP . . . D 4 -3.381 27.825 28.06 1 29.44 ? C5' GTP 170 A 1 HETATM 15 C C4' GTP . . . D 4 -4.445 28.155 27.042 1 28.2 ? C4' GTP 170 A 1 HETATM 16 O O4' GTP . . . D 4 -4.11 28.055 25.606 1 28.41 ? O4' GTP 170 A 1 HETATM 17 C C3' GTP . . . D 4 -5.604 27.188 27.328 1 30.01 ? C3' GTP 170 A 1 HETATM 18 O O3' GTP . . . D 4 -6.785 27.987 27.479 1 30.45 ? O3' GTP 170 A 1 HETATM 19 C C2' GTP . . . D 4 -5.593 26.218 26.129 1 28.85 ? C2' GTP 170 A 1 HETATM 20 O O2' GTP . . . D 4 -6.911 25.636 25.828 1 31.48 ? O2' GTP 170 A 1 HETATM 21 C C1' GTP . . . D 4 -5.017 27.118 25.026 1 27.38 ? C1' GTP 170 A 1 HETATM 22 N N9 GTP . . . D 4 -4.219 26.433 24.058 1 27.99 ? N9 GTP 170 A 1 HETATM 23 C C8 GTP . . . D 4 -3.134 25.648 24.211 1 25.66 ? C8 GTP 170 A 1 HETATM 24 N N7 GTP . . . D 4 -2.621 25.156 23.122 1 27.69 ? N7 GTP 170 A 1 HETATM 25 C C5 GTP . . . D 4 -3.461 25.673 22.153 1 26.75 ? C5 GTP 170 A 1 HETATM 26 C C6 GTP . . . D 4 -3.462 25.522 20.74 1 28.07 ? C6 GTP 170 A 1 HETATM 27 O O6 GTP . . . D 4 -2.71 24.896 20.035 1 27.63 ? O6 GTP 170 A 1 HETATM 28 N N1 GTP . . . D 4 -4.491 26.215 20.126 1 28.24 ? N1 GTP 170 A 1 HETATM 29 C C2 GTP . . . D 4 -5.44 26.989 20.803 1 27.9 ? C2 GTP 170 A 1 HETATM 30 N N2 GTP . . . D 4 -6.38 27.633 20.087 1 26.92 ? N2 GTP 170 A 1 HETATM 31 N N3 GTP . . . D 4 -5.435 27.124 22.129 1 27.92 ? N3 GTP 170 A 1 HETATM 32 C C4 GTP . . . D 4 -4.431 26.447 22.739 1 28.27 ? C4 GTP 170 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #