data_1C21 # _model_server_result.job_id '_Kso7I6a7IDt45ntTc88rw' _model_server_result.datetime_utc '2024-11-24 01:02:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":300}' # _entry.id 1C21 # _exptl.entry_id 1C21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.2 _cell.angle_gamma 90 _cell.entry_id 1C21 _cell.length_a 39.242 _cell.length_b 67.588 _cell.length_c 48.927 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 73 A ASN 74 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc2 A O VAL 75 A VAL 76 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc3 A OD2 ASP 96 A ASP 97 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc4 A OD1 ASP 96 A ASP 97 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 A OD1 ASP 107 A ASP 108 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc6 A OD2 ASP 107 A ASP 108 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc7 A NE2 HIS 170 A HIS 171 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc8 A OE2 GLU 203 A GLU 204 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc9 A O SER 230 A SER 231 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc10 A OE1 GLU 234 A GLU 235 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc11 A OE2 GLU 234 A GLU 235 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc12 E O MET . A MET 300 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc13 E N MET . A MET 300 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc14 E O MET . A MET 300 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc15 D NA NA . A NA 501 1_555 F O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 218 n n N H MET sing 219 n n N H2 MET sing 220 n n CA C MET sing 221 n n CA CB MET sing 222 n n CA HA MET sing 223 n n C O MET doub 224 n n C OXT MET sing 225 n n CB CG MET sing 226 n n CB HB2 MET sing 227 n n CB HB3 MET sing 228 n n CG SD MET sing 229 n n CG HG2 MET sing 230 n n CG HG3 MET sing 231 n n SD CE MET sing 232 n n CE HE1 MET sing 233 n n CE HE2 MET sing 234 n n CE HE3 MET sing 235 n n OXT HXT MET sing 236 n n # _atom_sites.entry_id 1C21 _atom_sites.fract_transf_matrix[1][1] 0.025483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009886 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 401 401 CO CO+ . C 2 CO A 1 402 402 CO CO+ . D 3 NA A 1 501 501 NA NA+ . E 4 MET A 1 300 1 MET INH . F 5 HOH A 1 502 1 HOH HOH . F 5 HOH A 2 503 2 HOH HOH . F 5 HOH A 3 504 3 HOH HOH . F 5 HOH A 4 505 4 HOH HOH . F 5 HOH A 5 506 5 HOH HOH . F 5 HOH A 6 507 6 HOH HOH . F 5 HOH A 7 508 7 HOH HOH . F 5 HOH A 8 509 8 HOH HOH . F 5 HOH A 9 510 9 HOH HOH . F 5 HOH A 10 511 10 HOH HOH . F 5 HOH A 11 512 11 HOH HOH . F 5 HOH A 12 513 12 HOH HOH . F 5 HOH A 13 514 13 HOH HOH . F 5 HOH A 14 515 14 HOH HOH . F 5 HOH A 15 516 15 HOH HOH . F 5 HOH A 16 517 16 HOH HOH . F 5 HOH A 17 518 17 HOH HOH . F 5 HOH A 18 519 18 HOH HOH . F 5 HOH A 19 520 19 HOH HOH . F 5 HOH A 20 521 20 HOH HOH . F 5 HOH A 21 522 21 HOH HOH . F 5 HOH A 22 523 22 HOH HOH . F 5 HOH A 23 524 23 HOH HOH . F 5 HOH A 24 525 24 HOH HOH . F 5 HOH A 25 526 25 HOH HOH . F 5 HOH A 26 527 26 HOH HOH . F 5 HOH A 27 528 27 HOH HOH . F 5 HOH A 28 529 28 HOH HOH . F 5 HOH A 29 530 29 HOH HOH . F 5 HOH A 30 531 30 HOH HOH . F 5 HOH A 31 532 31 HOH HOH . F 5 HOH A 32 533 32 HOH HOH . F 5 HOH A 33 534 33 HOH HOH . F 5 HOH A 34 535 34 HOH HOH . F 5 HOH A 35 536 35 HOH HOH . F 5 HOH A 36 537 36 HOH HOH . F 5 HOH A 37 538 37 HOH HOH . F 5 HOH A 38 539 38 HOH HOH . F 5 HOH A 39 540 39 HOH HOH . F 5 HOH A 40 541 40 HOH HOH . F 5 HOH A 41 542 41 HOH HOH . F 5 HOH A 42 543 42 HOH HOH . F 5 HOH A 43 544 43 HOH HOH . F 5 HOH A 44 545 44 HOH HOH . F 5 HOH A 45 546 45 HOH HOH . F 5 HOH A 46 547 46 HOH HOH . F 5 HOH A 47 548 47 HOH HOH . F 5 HOH A 48 549 48 HOH HOH . F 5 HOH A 49 550 49 HOH HOH . F 5 HOH A 50 551 50 HOH HOH . F 5 HOH A 51 552 51 HOH HOH . F 5 HOH A 52 553 52 HOH HOH . F 5 HOH A 53 554 53 HOH HOH . F 5 HOH A 54 555 54 HOH HOH . F 5 HOH A 55 556 55 HOH HOH . F 5 HOH A 56 557 56 HOH HOH . F 5 HOH A 57 558 57 HOH HOH . F 5 HOH A 58 559 58 HOH HOH . F 5 HOH A 59 560 59 HOH HOH . F 5 HOH A 60 561 60 HOH HOH . F 5 HOH A 61 562 61 HOH HOH . F 5 HOH A 62 563 62 HOH HOH . F 5 HOH A 63 564 63 HOH HOH . F 5 HOH A 64 565 64 HOH HOH . F 5 HOH A 65 566 65 HOH HOH . F 5 HOH A 66 567 66 HOH HOH . F 5 HOH A 67 568 67 HOH HOH . F 5 HOH A 68 569 68 HOH HOH . F 5 HOH A 69 570 69 HOH HOH . F 5 HOH A 70 571 70 HOH HOH . F 5 HOH A 71 572 71 HOH HOH . F 5 HOH A 72 573 72 HOH HOH . F 5 HOH A 73 574 73 HOH HOH . F 5 HOH A 74 575 74 HOH HOH . F 5 HOH A 75 576 75 HOH HOH . F 5 HOH A 76 577 76 HOH HOH . F 5 HOH A 77 578 77 HOH HOH . F 5 HOH A 78 579 78 HOH HOH . F 5 HOH A 79 580 79 HOH HOH . F 5 HOH A 80 581 80 HOH HOH . F 5 HOH A 81 582 81 HOH HOH . F 5 HOH A 82 583 82 HOH HOH . F 5 HOH A 83 584 83 HOH HOH . F 5 HOH A 84 585 84 HOH HOH . F 5 HOH A 85 586 85 HOH HOH . F 5 HOH A 86 587 86 HOH HOH . F 5 HOH A 87 588 87 HOH HOH . F 5 HOH A 88 589 88 HOH HOH . F 5 HOH A 89 590 89 HOH HOH . F 5 HOH A 90 591 90 HOH HOH . F 5 HOH A 91 592 91 HOH HOH . F 5 HOH A 92 593 92 HOH HOH . F 5 HOH A 93 594 93 HOH HOH . F 5 HOH A 94 595 94 HOH HOH . F 5 HOH A 95 596 95 HOH HOH . F 5 HOH A 96 597 96 HOH HOH . F 5 HOH A 97 598 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . E 4 20.165 -15.57 9.484 1 19 ? N MET 300 A 1 HETATM 2 C CA MET . . . E 4 20.663 -14.263 8.895 1 37.08 ? CA MET 300 A 1 HETATM 3 C C MET . . . E 4 19.721 -13.728 7.78 1 38.82 ? C MET 300 A 1 HETATM 4 O O MET . . . E 4 18.496 -13.679 8.084 1 17.38 ? O MET 300 A 1 HETATM 5 C CB MET . . . E 4 22.108 -14.375 8.337 1 42.88 ? CB MET 300 A 1 HETATM 6 C CG MET . . . E 4 23.2 -13.482 8.957 1 52.4 ? CG MET 300 A 1 HETATM 7 S SD MET . . . E 4 24.82 -14.248 8.713 1 59.84 ? SD MET 300 A 1 HETATM 8 C CE MET . . . E 4 25.865 -13.16 9.714 1 56.14 ? CE MET 300 A 1 HETATM 9 O OXT MET . . . E 4 20.232 -13.338 6.686 1 27.77 ? OXT MET 300 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #