data_1C2Y # _model_server_result.job_id Ewr96kfJigLA-3hHz0XVTA _model_server_result.datetime_utc '2024-11-18 10:40:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":206}' # _entry.id 1C2Y # _exptl.entry_id 1C2Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.23 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-NITROSO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE _entity.pdbx_number_of_molecules 20 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1C2Y _cell.length_a 218.24 _cell.length_b 218.24 _cell.length_c 218.24 _cell.Z_PDB 240 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C2Y _symmetry.cell_setting cubic _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? eicosameric 20 author_defined_assembly 1 PISA,PQS 60-meric 60 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_645 -z+1,x-1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 218.24 -109.12 109.12 3 'crystal symmetry operation' 11_556 y+1/2,-z+1/2,-x+1 0 1 0 0 0 -1 -1 0 0 109.12 109.12 218.24 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N # _chem_comp.formula 'C9 H14 N4 O7' _chem_comp.formula_weight 290.23 _chem_comp.id LMZ _chem_comp.mon_nstd_flag . _chem_comp.name 5-NITROSO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 LMZ sing 192 n y N1 C6 LMZ sing 193 n y N1 HN1 LMZ sing 194 n n C2 N3 LMZ sing 195 n y C2 O2 LMZ doub 196 n n N3 C4 LMZ sing 197 n y N3 HN3 LMZ sing 198 n n C4 C5 LMZ sing 199 n y C4 O4 LMZ doub 200 n n C5 C6 LMZ doub 201 n y C5 N5 LMZ sing 202 n n C6 N7 LMZ sing 203 n n N7 C8 LMZ sing 204 n n N7 HN7 LMZ sing 205 n n C8 C9 LMZ sing 206 n n C8 H81 LMZ sing 207 n n C8 H82 LMZ sing 208 n n C9 O9 LMZ sing 209 n n C9 C10 LMZ sing 210 n n C9 H9 LMZ sing 211 n n O9 HO9 LMZ sing 212 n n C10 O10 LMZ sing 213 n n C10 C11 LMZ sing 214 n n C10 H10 LMZ sing 215 n n O10 HO10 LMZ sing 216 n n C11 O11 LMZ sing 217 n n C11 C12 LMZ sing 218 n n C11 H11 LMZ sing 219 n n O11 HO11 LMZ sing 220 n n C12 O12 LMZ sing 221 n n C12 H121 LMZ sing 222 n n C12 H122 LMZ sing 223 n n O12 HO12 LMZ sing 224 n n N5 O52 LMZ doub 225 n n # _atom_sites.entry_id 1C2Y _atom_sites.fract_transf_matrix[1][1] 0.004582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 2 LMZ A 1 201 201 LMZ LMZ . V 2 LMZ B 1 202 202 LMZ LMZ . W 2 LMZ C 1 203 203 LMZ LMZ . X 2 LMZ D 1 204 204 LMZ LMZ . Y 2 LMZ E 1 205 205 LMZ LMZ . Z 2 LMZ F 1 206 206 LMZ LMZ . AA 2 LMZ G 1 207 207 LMZ LMZ . BA 2 LMZ H 1 208 208 LMZ LMZ . CA 2 LMZ I 1 209 209 LMZ LMZ . DA 2 LMZ J 1 210 210 LMZ LMZ . EA 2 LMZ K 1 211 211 LMZ LMZ . FA 2 LMZ L 1 212 212 LMZ LMZ . GA 2 LMZ M 1 213 213 LMZ LMZ . HA 2 LMZ N 1 214 214 LMZ LMZ . IA 2 LMZ O 1 215 215 LMZ LMZ . JA 2 LMZ P 1 216 216 LMZ LMZ . KA 2 LMZ Q 1 217 217 LMZ LMZ . LA 2 LMZ R 1 218 218 LMZ LMZ . MA 2 LMZ S 1 219 219 LMZ LMZ . NA 2 LMZ T 1 220 220 LMZ LMZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LMZ . . . Z 2 160.679 15.243 116.101 1 44.65 ? N1 LMZ 206 F 1 HETATM 2 C C2 LMZ . . . Z 2 160.545 13.908 116.455 1 44.65 ? C2 LMZ 206 F 1 HETATM 3 N N3 LMZ . . . Z 2 159.307 13.395 116.457 1 44.65 ? N3 LMZ 206 F 1 HETATM 4 C C4 LMZ . . . Z 2 158.181 14.097 116.151 1 44.65 ? C4 LMZ 206 F 1 HETATM 5 C C5 LMZ . . . Z 2 158.358 15.569 115.8 1 44.65 ? C5 LMZ 206 F 1 HETATM 6 C C6 LMZ . . . Z 2 159.654 16.11 115.84 1 44.65 ? C6 LMZ 206 F 1 HETATM 7 N N7 LMZ . . . Z 2 159.973 17.424 115.647 1 44.65 ? N7 LMZ 206 F 1 HETATM 8 C C8 LMZ . . . Z 2 160.267 17.714 114.208 1 44.65 ? C8 LMZ 206 F 1 HETATM 9 C C9 LMZ . . . Z 2 161.814 17.962 113.915 1 44.65 ? C9 LMZ 206 F 1 HETATM 10 O O9 LMZ . . . Z 2 162.512 16.821 114.361 1 44.65 ? O9 LMZ 206 F 1 HETATM 11 C C10 LMZ . . . Z 2 162.688 19.249 114.304 1 44.65 ? C10 LMZ 206 F 1 HETATM 12 O O10 LMZ . . . Z 2 163.014 19.229 115.661 1 44.65 ? O10 LMZ 206 F 1 HETATM 13 C C11 LMZ . . . Z 2 162.361 20.778 113.802 1 44.65 ? C11 LMZ 206 F 1 HETATM 14 O O11 LMZ . . . Z 2 161.194 20.395 113.072 1 44.65 ? O11 LMZ 206 F 1 HETATM 15 C C12 LMZ . . . Z 2 163.089 21.635 112.638 1 44.65 ? C12 LMZ 206 F 1 HETATM 16 O O12 LMZ . . . Z 2 164.461 21.229 112.593 1 44.65 ? O12 LMZ 206 F 1 HETATM 17 N N5 LMZ . . . Z 2 157.184 16.334 115.536 1 44.65 ? N5 LMZ 206 F 1 HETATM 18 O O52 LMZ . . . Z 2 157.326 17.506 115.258 1 44.65 ? O52 LMZ 206 F 1 HETATM 19 O O4 LMZ . . . Z 2 157.011 13.354 116.219 1 44.65 ? O4 LMZ 206 F 1 HETATM 20 O O2 LMZ . . . Z 2 161.704 13.227 116.776 1 44.65 ? O2 LMZ 206 F 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #