data_1C39 # _model_server_result.job_id sSBRNlbG4S1oMYQVDB0MqQ _model_server_result.datetime_utc '2024-11-04 22:53:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":199}' # _entry.id 1C39 # _exptl.entry_id 1C39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.33 _cell.angle_gamma 90 _cell.entry_id 1C39 _cell.length_a 42.84 _cell.length_b 79.31 _cell.length_c 55.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 MAN MAN C1 O1 . O3 HO3 . sing 3 ? 3 3 2 M6P MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 201 NAG 2 n C NAG 2 C 2 NAG A 202 NAG 2 n D NAG 1 D 1 NAG B 201 NAG 2 n D NAG 2 D 2 NAG B 202 NAG 3 n E MAN 1 E 1 MAN ? 1200 P3M 3 n E MAN 2 E 2 MAN ? 1200 P3M 3 n E M6P 3 E 3 M6P ? 1200 P3M 3 n F MAN 1 F 1 MAN ? 2200 P3M 3 n F MAN 2 F 2 MAN ? 2200 P3M 3 n F M6P 3 F 3 M6P ? 2200 P3M # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 6 1_555 A SG CYS 50 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 104 A CYS 106 1_555 A SG CYS 139 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 117 A CYS 119 1_555 A SG CYS 151 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 4 B CYS 6 1_555 B SG CYS 50 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 104 B CYS 106 1_555 B SG CYS 139 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf6 B SG CYS 117 B CYS 119 1_555 B SG CYS 151 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 79 A ASN 81 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 79 B ASN 81 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale5 E O3 MAN . E MAN 1 1_555 E C1 MAN . E MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 sing covale ? covale6 E O3 MAN . E MAN 2 1_555 E C1 M6P . E M6P 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 sing covale ? covale7 F O3 MAN . F MAN 1 1_555 F C1 MAN . F MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 sing covale ? covale8 F O3 MAN . F MAN 2 1_555 F C1 M6P . F M6P 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 sing metalc ? metalc1 B OD1 ASP 101 B ASP 103 1_555 H MN MN . B MN 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 H MN MN . B MN 199 1_555 J O HOH . B HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 H MN MN . B MN 199 1_555 J O HOH . B HOH 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 H MN MN . B MN 199 1_555 J O HOH . B HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc5 H MN MN . B MN 199 1_555 J O HOH . B HOH 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc6 H MN MN . B MN 199 1_555 F O1P M6P . F M6P 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1C39 _atom_sites.fract_transf_matrix[1][1] 0.023343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004255 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MN A 1 199 199 MN MN . H 4 MN B 1 199 199 MN MN . I 5 HOH A 1 501 501 HOH HOH . I 5 HOH A 2 502 502 HOH HOH . I 5 HOH A 3 507 507 HOH HOH . I 5 HOH A 4 510 510 HOH HOH . I 5 HOH A 5 511 511 HOH HOH . I 5 HOH A 6 513 513 HOH HOH . I 5 HOH A 7 514 514 HOH HOH . I 5 HOH A 8 515 515 HOH HOH . I 5 HOH A 9 519 519 HOH HOH . I 5 HOH A 10 521 521 HOH HOH . I 5 HOH A 11 522 522 HOH HOH . I 5 HOH A 12 527 527 HOH HOH . I 5 HOH A 13 528 528 HOH HOH . I 5 HOH A 14 535 535 HOH HOH . I 5 HOH A 15 537 537 HOH HOH . I 5 HOH A 16 538 538 HOH HOH . I 5 HOH A 17 539 539 HOH HOH . I 5 HOH A 18 542 542 HOH HOH . I 5 HOH A 19 543 543 HOH HOH . I 5 HOH A 20 544 544 HOH HOH . I 5 HOH A 21 546 546 HOH HOH . I 5 HOH A 22 548 548 HOH HOH . I 5 HOH A 23 549 549 HOH HOH . I 5 HOH A 24 553 553 HOH HOH . I 5 HOH A 25 554 554 HOH HOH . I 5 HOH A 26 556 556 HOH HOH . I 5 HOH A 27 557 557 HOH HOH . I 5 HOH A 28 558 558 HOH HOH . I 5 HOH A 29 561 561 HOH HOH . I 5 HOH A 30 562 562 HOH HOH . I 5 HOH A 31 564 564 HOH HOH . I 5 HOH A 32 565 565 HOH HOH . I 5 HOH A 33 570 570 HOH HOH . I 5 HOH A 34 582 582 HOH HOH . I 5 HOH A 35 584 584 HOH HOH . I 5 HOH A 36 595 595 HOH HOH . I 5 HOH A 37 596 596 HOH HOH . I 5 HOH A 38 599 599 HOH HOH . I 5 HOH A 39 600 600 HOH HOH . I 5 HOH A 40 601 601 HOH HOH . I 5 HOH A 41 602 602 HOH HOH . I 5 HOH A 42 606 606 HOH HOH . I 5 HOH A 43 607 607 HOH HOH . I 5 HOH A 44 608 608 HOH HOH . I 5 HOH A 45 612 612 HOH HOH . I 5 HOH A 46 614 614 HOH HOH . I 5 HOH A 47 615 615 HOH HOH . I 5 HOH A 48 616 616 HOH HOH . I 5 HOH A 49 617 617 HOH HOH . I 5 HOH A 50 618 618 HOH HOH . I 5 HOH A 51 620 620 HOH HOH . I 5 HOH A 52 621 621 HOH HOH . I 5 HOH A 53 622 622 HOH HOH . I 5 HOH A 54 623 623 HOH HOH . I 5 HOH A 55 626 626 HOH HOH . I 5 HOH A 56 627 627 HOH HOH . I 5 HOH A 57 630 630 HOH HOH . I 5 HOH A 58 631 631 HOH HOH . I 5 HOH A 59 633 633 HOH HOH . I 5 HOH A 60 635 635 HOH HOH . I 5 HOH A 61 636 636 HOH HOH . I 5 HOH A 62 637 637 HOH HOH . I 5 HOH A 63 638 638 HOH HOH . I 5 HOH A 64 639 639 HOH HOH . I 5 HOH A 65 640 640 HOH HOH . I 5 HOH A 66 641 641 HOH HOH . I 5 HOH A 67 642 642 HOH HOH . I 5 HOH A 68 643 643 HOH HOH . I 5 HOH A 69 644 644 HOH HOH . I 5 HOH A 70 645 645 HOH HOH . I 5 HOH A 71 646 646 HOH HOH . I 5 HOH A 72 647 647 HOH HOH . I 5 HOH A 73 654 654 HOH HOH . I 5 HOH A 74 655 655 HOH HOH . I 5 HOH A 75 661 661 HOH HOH . I 5 HOH A 76 666 666 HOH HOH . I 5 HOH A 77 668 668 HOH HOH . I 5 HOH A 78 669 669 HOH HOH . J 5 HOH B 1 503 503 HOH HOH . J 5 HOH B 2 504 504 HOH HOH . J 5 HOH B 3 505 505 HOH HOH . J 5 HOH B 4 506 506 HOH HOH . J 5 HOH B 5 508 508 HOH HOH . J 5 HOH B 6 509 509 HOH HOH . J 5 HOH B 7 512 512 HOH HOH . J 5 HOH B 8 516 516 HOH HOH . J 5 HOH B 9 517 517 HOH HOH . J 5 HOH B 10 518 518 HOH HOH . J 5 HOH B 11 520 520 HOH HOH . J 5 HOH B 12 523 523 HOH HOH . J 5 HOH B 13 524 524 HOH HOH . J 5 HOH B 14 525 525 HOH HOH . J 5 HOH B 15 526 526 HOH HOH . J 5 HOH B 16 529 529 HOH HOH . J 5 HOH B 17 530 530 HOH HOH . J 5 HOH B 18 531 531 HOH HOH . J 5 HOH B 19 532 532 HOH HOH . J 5 HOH B 20 533 533 HOH HOH . J 5 HOH B 21 534 534 HOH HOH . J 5 HOH B 22 536 536 HOH HOH . J 5 HOH B 23 540 540 HOH HOH . J 5 HOH B 24 541 541 HOH HOH . J 5 HOH B 25 545 545 HOH HOH . J 5 HOH B 26 547 547 HOH HOH . J 5 HOH B 27 550 550 HOH HOH . J 5 HOH B 28 551 551 HOH HOH . J 5 HOH B 29 552 552 HOH HOH . J 5 HOH B 30 555 555 HOH HOH . J 5 HOH B 31 559 559 HOH HOH . J 5 HOH B 32 560 560 HOH HOH . J 5 HOH B 33 563 563 HOH HOH . J 5 HOH B 34 566 566 HOH HOH . J 5 HOH B 35 567 567 HOH HOH . J 5 HOH B 36 568 568 HOH HOH . J 5 HOH B 37 569 569 HOH HOH . J 5 HOH B 38 571 571 HOH HOH . J 5 HOH B 39 572 572 HOH HOH . J 5 HOH B 40 573 573 HOH HOH . J 5 HOH B 41 574 574 HOH HOH . J 5 HOH B 42 575 575 HOH HOH . J 5 HOH B 43 576 576 HOH HOH . J 5 HOH B 44 577 577 HOH HOH . J 5 HOH B 45 578 578 HOH HOH . J 5 HOH B 46 579 579 HOH HOH . J 5 HOH B 47 580 580 HOH HOH . J 5 HOH B 48 581 581 HOH HOH . J 5 HOH B 49 583 583 HOH HOH . J 5 HOH B 50 585 585 HOH HOH . J 5 HOH B 51 586 586 HOH HOH . J 5 HOH B 52 587 587 HOH HOH . J 5 HOH B 53 588 588 HOH HOH . J 5 HOH B 54 589 589 HOH HOH . J 5 HOH B 55 590 590 HOH HOH . J 5 HOH B 56 591 591 HOH HOH . J 5 HOH B 57 592 592 HOH HOH . J 5 HOH B 58 593 593 HOH HOH . J 5 HOH B 59 594 594 HOH HOH . J 5 HOH B 60 597 597 HOH HOH . J 5 HOH B 61 598 598 HOH HOH . J 5 HOH B 62 603 603 HOH HOH . J 5 HOH B 63 604 604 HOH HOH . J 5 HOH B 64 605 605 HOH HOH . J 5 HOH B 65 609 609 HOH HOH . J 5 HOH B 66 610 610 HOH HOH . J 5 HOH B 67 611 611 HOH HOH . J 5 HOH B 68 613 613 HOH HOH . J 5 HOH B 69 619 619 HOH HOH . J 5 HOH B 70 624 624 HOH HOH . J 5 HOH B 71 625 625 HOH HOH . J 5 HOH B 72 628 628 HOH HOH . J 5 HOH B 73 629 629 HOH HOH . J 5 HOH B 74 632 632 HOH HOH . J 5 HOH B 75 634 634 HOH HOH . J 5 HOH B 76 648 648 HOH HOH . J 5 HOH B 77 649 649 HOH HOH . J 5 HOH B 78 650 650 HOH HOH . J 5 HOH B 79 651 651 HOH HOH . J 5 HOH B 80 652 652 HOH HOH . J 5 HOH B 81 653 653 HOH HOH . J 5 HOH B 82 656 656 HOH HOH . J 5 HOH B 83 657 657 HOH HOH . J 5 HOH B 84 658 658 HOH HOH . J 5 HOH B 85 659 659 HOH HOH . J 5 HOH B 86 660 660 HOH HOH . J 5 HOH B 87 662 662 HOH HOH . J 5 HOH B 88 663 663 HOH HOH . J 5 HOH B 89 664 664 HOH HOH . J 5 HOH B 90 665 665 HOH HOH . J 5 HOH B 91 667 667 HOH HOH . J 5 HOH B 92 670 670 HOH HOH . J 5 HOH B 93 671 671 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 20.482 _atom_site.Cartn_y -37.725 _atom_site.Cartn_z 36.809 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 199 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #