data_1C3B
#
_model_server_result.job_id            HTJSZWVVeGrtXUjQOCGUMA 
_model_server_result.datetime_utc      '2024-11-23 12:51:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1c3b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":362}' 
#
_entry.id    1C3B 
#
_exptl.entry_id    1C3B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              178.016 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BENZO[B]THIOPHENE-2-BORONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.066 
_cell.angle_gamma         90 
_cell.entry_id            1C3B 
_cell.length_a            118.859 
_cell.length_b            78.012 
_cell.length_c            98.962 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1C3B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 61 A SER 64 1_555 C B BZB . A BZB 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.666 ? 
covale ? covale2 B OG SER 61 B SER 64 1_555 D B BZB . B BZB 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? 
#
_chem_comp.formula           'C8 H7 B O2 S' 
_chem_comp.formula_weight    178.016 
_chem_comp.id                BZB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BENZO[B]THIOPHENE-2-BORONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
B O1 BZB sing 70 n n 
B O2 BZB sing 71 n n 
B C1 BZB sing 72 n n 
O1 HO11 BZB sing 73 n n 
O2 HO21 BZB sing 74 n n 
C1 C2 BZB doub 75 n y 
C1 S BZB sing 76 n y 
C2 C3 BZB sing 77 n y 
C2 HC21 BZB sing 78 n n 
C8 C3 BZB doub 79 n y 
C8 C7 BZB sing 80 n y 
C8 S BZB sing 81 n y 
C3 C4 BZB sing 82 n y 
C7 C6 BZB doub 83 n y 
C7 HC71 BZB sing 84 n n 
C4 C5 BZB doub 85 n y 
C4 HC41 BZB sing 86 n n 
C6 C5 BZB sing 87 n y 
C6 HC61 BZB sing 88 n n 
C5 HC51 BZB sing 89 n n 
#
_atom_sites.entry_id                     1C3B 
_atom_sites.fract_transf_matrix[1][1]    0.008413 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004115 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012819 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011249 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BZB A 1 362 362 BZB BZB . 
D 2 BZB B 1 362 362 BZB BZB . 
E 3 HOH A 1 400 400 HOH H2O . 
E 3 HOH A 2 401 401 HOH H2O . 
E 3 HOH A 3 403 403 HOH H2O . 
E 3 HOH A 4 404 404 HOH H2O . 
E 3 HOH A 5 409 409 HOH H2O . 
E 3 HOH A 6 411 411 HOH H2O . 
E 3 HOH A 7 413 413 HOH H2O . 
E 3 HOH A 8 422 422 HOH H2O . 
E 3 HOH A 9 423 423 HOH H2O . 
E 3 HOH A 10 425 425 HOH H2O . 
E 3 HOH A 11 426 426 HOH H2O . 
E 3 HOH A 12 429 429 HOH H2O . 
E 3 HOH A 13 432 432 HOH H2O . 
E 3 HOH A 14 433 433 HOH H2O . 
E 3 HOH A 15 436 436 HOH H2O . 
E 3 HOH A 16 437 437 HOH H2O . 
E 3 HOH A 17 438 438 HOH H2O . 
E 3 HOH A 18 439 439 HOH H2O . 
E 3 HOH A 19 440 440 HOH H2O . 
E 3 HOH A 20 444 444 HOH H2O . 
E 3 HOH A 21 446 446 HOH H2O . 
E 3 HOH A 22 448 448 HOH H2O . 
E 3 HOH A 23 453 453 HOH H2O . 
E 3 HOH A 24 454 454 HOH H2O . 
E 3 HOH A 25 460 460 HOH H2O . 
E 3 HOH A 26 461 461 HOH H2O . 
E 3 HOH A 27 462 462 HOH H2O . 
E 3 HOH A 28 463 463 HOH H2O . 
E 3 HOH A 29 464 464 HOH H2O . 
E 3 HOH A 30 465 465 HOH H2O . 
E 3 HOH A 31 466 466 HOH H2O . 
E 3 HOH A 32 467 467 HOH H2O . 
E 3 HOH A 33 468 468 HOH H2O . 
E 3 HOH A 34 469 469 HOH H2O . 
E 3 HOH A 35 470 470 HOH H2O . 
E 3 HOH A 36 471 471 HOH H2O . 
E 3 HOH A 37 472 472 HOH H2O . 
E 3 HOH A 38 473 473 HOH H2O . 
E 3 HOH A 39 475 475 HOH H2O . 
E 3 HOH A 40 477 477 HOH H2O . 
E 3 HOH A 41 490 490 HOH H2O . 
E 3 HOH A 42 491 491 HOH H2O . 
E 3 HOH A 43 492 492 HOH H2O . 
F 3 HOH B 1 402 402 HOH H2O . 
F 3 HOH B 2 405 405 HOH H2O . 
F 3 HOH B 3 406 406 HOH H2O . 
F 3 HOH B 4 407 407 HOH H2O . 
F 3 HOH B 5 408 408 HOH H2O . 
F 3 HOH B 6 410 410 HOH H2O . 
F 3 HOH B 7 412 412 HOH H2O . 
F 3 HOH B 8 414 414 HOH H2O . 
F 3 HOH B 9 415 415 HOH H2O . 
F 3 HOH B 10 416 416 HOH H2O . 
F 3 HOH B 11 417 417 HOH H2O . 
F 3 HOH B 12 418 418 HOH H2O . 
F 3 HOH B 13 419 419 HOH H2O . 
F 3 HOH B 14 420 420 HOH H2O . 
F 3 HOH B 15 421 421 HOH H2O . 
F 3 HOH B 16 424 424 HOH H2O . 
F 3 HOH B 17 427 427 HOH H2O . 
F 3 HOH B 18 428 428 HOH H2O . 
F 3 HOH B 19 430 430 HOH H2O . 
F 3 HOH B 20 431 431 HOH H2O . 
F 3 HOH B 21 434 434 HOH H2O . 
F 3 HOH B 22 435 435 HOH H2O . 
F 3 HOH B 23 441 441 HOH H2O . 
F 3 HOH B 24 442 442 HOH H2O . 
F 3 HOH B 25 443 443 HOH H2O . 
F 3 HOH B 26 445 445 HOH H2O . 
F 3 HOH B 27 447 447 HOH H2O . 
F 3 HOH B 28 449 449 HOH H2O . 
F 3 HOH B 29 450 450 HOH H2O . 
F 3 HOH B 30 451 451 HOH H2O . 
F 3 HOH B 31 452 452 HOH H2O . 
F 3 HOH B 32 455 455 HOH H2O . 
F 3 HOH B 33 456 456 HOH H2O . 
F 3 HOH B 34 457 457 HOH H2O . 
F 3 HOH B 35 458 458 HOH H2O . 
F 3 HOH B 36 459 459 HOH H2O . 
F 3 HOH B 37 474 474 HOH H2O . 
F 3 HOH B 38 476 476 HOH H2O . 
F 3 HOH B 39 478 478 HOH H2O . 
F 3 HOH B 40 479 479 HOH H2O . 
F 3 HOH B 41 480 480 HOH H2O . 
F 3 HOH B 42 481 481 HOH H2O . 
F 3 HOH B 43 482 482 HOH H2O . 
F 3 HOH B 44 483 483 HOH H2O . 
F 3 HOH B 45 484 484 HOH H2O . 
F 3 HOH B 46 485 485 HOH H2O . 
F 3 HOH B 47 486 486 HOH H2O . 
F 3 HOH B 48 487 487 HOH H2O . 
F 3 HOH B 49 488 488 HOH H2O . 
F 3 HOH B 50 489 489 HOH H2O . 
F 3 HOH B 51 493 493 HOH H2O . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B BZB . . . D 2 77.485 4.512 28.805 1 16.5 ? B BZB 362 B 1 
HETATM 2 O O1 BZB . . . D 2 77.376 5.319 27.577 1 16.49 ? O1 BZB 362 B 1 
HETATM 3 O O2 BZB . . . D 2 78.452 3.498 28.841 1 16.04 ? O2 BZB 362 B 1 
HETATM 4 C C1 BZB . . . D 2 78.024 5.514 29.889 1 20.76 ? C1 BZB 362 B 1 
HETATM 5 C C2 BZB . . . D 2 78.515 6.753 29.642 1 15.17 ? C2 BZB 362 B 1 
HETATM 6 C C8 BZB . . . D 2 78.825 6.521 31.951 1 28.83 ? C8 BZB 362 B 1 
HETATM 7 C C3 BZB . . . D 2 78.994 7.334 30.877 1 25.03 ? C3 BZB 362 B 1 
HETATM 8 C C7 BZB . . . D 2 79.241 6.912 33.298 1 28.11 ? C7 BZB 362 B 1 
HETATM 9 S S BZB . . . D 2 78.109 5.037 31.557 1 29.75 ? S BZB 362 B 1 
HETATM 10 C C4 BZB . . . D 2 79.59 8.626 31.074 1 28.24 ? C4 BZB 362 B 1 
HETATM 11 C C6 BZB . . . D 2 79.819 8.17 33.486 1 25.13 ? C6 BZB 362 B 1 
HETATM 12 C C5 BZB . . . D 2 79.995 9.025 32.377 1 30.53 ? C5 BZB 362 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           40 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           1143 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           12 
#