data_1C3D # _model_server_result.job_id Lvej5ZF8DG90-HtUCXrMJQ _model_server_result.datetime_utc '2024-12-24 17:47:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":299}' # _entry.id 1C3D # _exptl.entry_id 1C3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1C3D _cell.length_a 60.82 _cell.length_b 64.378 _cell.length_c 87.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 108 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 165 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 165 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.038 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1C3D _atom_sites.fract_transf_matrix[1][1] 0.016442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 295 103 GOL GOL . C 2 GOL A 1 296 104 GOL GOL . D 2 GOL A 1 297 105 GOL GOL . E 2 GOL A 1 298 106 GOL GOL . F 2 GOL A 1 299 107 GOL GOL . G 3 HOH A 1 300 1 HOH HOH . G 3 HOH A 2 301 2 HOH HOH . G 3 HOH A 3 302 3 HOH HOH . G 3 HOH A 4 303 4 HOH HOH . G 3 HOH A 5 304 5 HOH HOH . G 3 HOH A 6 305 6 HOH HOH . G 3 HOH A 7 306 7 HOH HOH . G 3 HOH A 8 307 8 HOH HOH . G 3 HOH A 9 308 9 HOH HOH . G 3 HOH A 10 309 10 HOH HOH . G 3 HOH A 11 310 11 HOH HOH . G 3 HOH A 12 311 12 HOH HOH . G 3 HOH A 13 312 13 HOH HOH . G 3 HOH A 14 313 14 HOH HOH . G 3 HOH A 15 314 15 HOH HOH . G 3 HOH A 16 315 16 HOH HOH . G 3 HOH A 17 316 17 HOH HOH . G 3 HOH A 18 317 18 HOH HOH . G 3 HOH A 19 318 19 HOH HOH . G 3 HOH A 20 319 20 HOH HOH . G 3 HOH A 21 320 21 HOH HOH . G 3 HOH A 22 321 22 HOH HOH . G 3 HOH A 23 322 23 HOH HOH . G 3 HOH A 24 323 24 HOH HOH . G 3 HOH A 25 324 25 HOH HOH . G 3 HOH A 26 325 26 HOH HOH . G 3 HOH A 27 326 27 HOH HOH . G 3 HOH A 28 327 28 HOH HOH . G 3 HOH A 29 328 29 HOH HOH . G 3 HOH A 30 329 30 HOH HOH . G 3 HOH A 31 330 31 HOH HOH . G 3 HOH A 32 331 32 HOH HOH . G 3 HOH A 33 332 33 HOH HOH . G 3 HOH A 34 333 34 HOH HOH . G 3 HOH A 35 334 35 HOH HOH . G 3 HOH A 36 335 36 HOH HOH . G 3 HOH A 37 336 37 HOH HOH . G 3 HOH A 38 337 38 HOH HOH . G 3 HOH A 39 338 39 HOH HOH . G 3 HOH A 40 339 40 HOH HOH . G 3 HOH A 41 340 41 HOH HOH . G 3 HOH A 42 341 42 HOH HOH . G 3 HOH A 43 342 43 HOH HOH . G 3 HOH A 44 343 44 HOH HOH . G 3 HOH A 45 344 45 HOH HOH . G 3 HOH A 46 345 46 HOH HOH . G 3 HOH A 47 346 47 HOH HOH . G 3 HOH A 48 347 48 HOH HOH . G 3 HOH A 49 348 49 HOH HOH . G 3 HOH A 50 349 50 HOH HOH . G 3 HOH A 51 350 51 HOH HOH . G 3 HOH A 52 351 52 HOH HOH . G 3 HOH A 53 352 53 HOH HOH . G 3 HOH A 54 353 54 HOH HOH . G 3 HOH A 55 354 55 HOH HOH . G 3 HOH A 56 355 56 HOH HOH . G 3 HOH A 57 356 57 HOH HOH . G 3 HOH A 58 357 58 HOH HOH . G 3 HOH A 59 358 59 HOH HOH . G 3 HOH A 60 359 60 HOH HOH . G 3 HOH A 61 360 61 HOH HOH . G 3 HOH A 62 361 62 HOH HOH . G 3 HOH A 63 362 63 HOH HOH . G 3 HOH A 64 363 64 HOH HOH . G 3 HOH A 65 364 65 HOH HOH . G 3 HOH A 66 365 66 HOH HOH . G 3 HOH A 67 366 67 HOH HOH . G 3 HOH A 68 367 68 HOH HOH . G 3 HOH A 69 368 69 HOH HOH . G 3 HOH A 70 369 70 HOH HOH . G 3 HOH A 71 370 71 HOH HOH . G 3 HOH A 72 371 72 HOH HOH . G 3 HOH A 73 372 73 HOH HOH . G 3 HOH A 74 373 74 HOH HOH . G 3 HOH A 75 374 75 HOH HOH . G 3 HOH A 76 375 76 HOH HOH . G 3 HOH A 77 376 77 HOH HOH . G 3 HOH A 78 377 78 HOH HOH . G 3 HOH A 79 378 79 HOH HOH . G 3 HOH A 80 379 80 HOH HOH . G 3 HOH A 81 380 81 HOH HOH . G 3 HOH A 82 381 82 HOH HOH . G 3 HOH A 83 382 83 HOH HOH . G 3 HOH A 84 383 84 HOH HOH . G 3 HOH A 85 384 85 HOH HOH . G 3 HOH A 86 385 86 HOH HOH . G 3 HOH A 87 386 87 HOH HOH . G 3 HOH A 88 387 88 HOH HOH . G 3 HOH A 89 388 89 HOH HOH . G 3 HOH A 90 389 90 HOH HOH . G 3 HOH A 91 390 91 HOH HOH . G 3 HOH A 92 391 92 HOH HOH . G 3 HOH A 93 392 93 HOH HOH . G 3 HOH A 94 393 94 HOH HOH . G 3 HOH A 95 394 95 HOH HOH . G 3 HOH A 96 395 96 HOH HOH . G 3 HOH A 97 396 97 HOH HOH . G 3 HOH A 98 397 98 HOH HOH . G 3 HOH A 99 398 99 HOH HOH . G 3 HOH A 100 399 100 HOH HOH . G 3 HOH A 101 400 101 HOH HOH . G 3 HOH A 102 401 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 -5.401 7.637 32.247 1 46.14 ? C1 GOL 299 A 1 HETATM 2 O O1 GOL . . . F 2 -4.106 8.198 32.324 1 49.08 ? O1 GOL 299 A 1 HETATM 3 C C2 GOL . . . F 2 -6.268 8.219 33.354 1 47.94 ? C2 GOL 299 A 1 HETATM 4 O O2 GOL . . . F 2 -7.551 7.593 33.331 1 48.55 ? O2 GOL 299 A 1 HETATM 5 C C3 GOL . . . F 2 -6.437 9.722 33.15 1 45.12 ? C3 GOL 299 A 1 HETATM 6 O O3 GOL . . . F 2 -7.085 10.316 34.259 1 42.12 ? O3 GOL 299 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #