data_1C3E
#
_model_server_result.job_id            VaU8kvqrwrzlnlY_rjxjzA 
_model_server_result.datetime_utc      '2024-11-21 23:20:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1c3e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":221}' 
#
_entry.id    1C3E 
#
_exptl.entry_id    1C3E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.16 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLYCINAMIDE RIBONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.5 
_cell.angle_gamma         90 
_cell.entry_id            1C3E 
_cell.length_a            40.25 
_cell.length_b            112.79 
_cell.length_c            46.96 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1C3E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C7 H13 N2 O8 P -2' 
_chem_comp.formula_weight    284.16 
_chem_comp.id                GAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GLYCINAMIDE RIBONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O6 GAR sing 83 n n 
C1 C2 GAR sing 84 n n 
C1 C5 GAR sing 85 n n 
C1 H1 GAR sing 86 n n 
O6 HO6 GAR sing 87 n n 
C2 O8 GAR sing 88 n n 
C2 C3 GAR sing 89 n n 
C2 H2 GAR sing 90 n n 
O8 HO8 GAR sing 91 n n 
C3 O4 GAR sing 92 n n 
C3 N19 GAR sing 93 n n 
C3 H3 GAR sing 94 n n 
O4 C5 GAR sing 95 n n 
C5 C10 GAR sing 96 n n 
C5 H5 GAR sing 97 n n 
C10 O12 GAR sing 98 n n 
C10 H101 GAR sing 99 n n 
C10 H102 GAR sing 100 n n 
O12 P15 GAR sing 101 n n 
N19 C21 GAR sing 102 n n 
N19 H19 GAR sing 103 n n 
C21 O22 GAR doub 104 n n 
C21 C23 GAR sing 105 n n 
C23 N24 GAR sing 106 n n 
C23 H231 GAR sing 107 n n 
C23 H232 GAR sing 108 n n 
N24 H241 GAR sing 109 n n 
N24 H242 GAR sing 110 n n 
P15 O16 GAR doub 111 n n 
P15 O17 GAR sing 112 n n 
P15 O18 GAR sing 113 n n 
#
_atom_sites.entry_id                     1C3E 
_atom_sites.fract_transf_matrix[1][1]    0.024845 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005055 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008866 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NHR A 1 220 220 NHR NHR . 
D 3 GAR A 1 221 221 GAR GAR . 
E 2 NHR B 1 222 220 NHR NHR . 
F 3 GAR B 1 223 221 GAR GAR . 
G 4 HOH A 1 222 5 HOH HOH . 
G 4 HOH A 2 223 8 HOH HOH . 
G 4 HOH A 3 224 10 HOH HOH . 
G 4 HOH A 4 225 13 HOH HOH . 
G 4 HOH A 5 226 14 HOH HOH . 
G 4 HOH A 6 227 15 HOH HOH . 
G 4 HOH A 7 228 22 HOH HOH . 
G 4 HOH A 8 229 23 HOH HOH . 
G 4 HOH A 9 230 25 HOH HOH . 
G 4 HOH A 10 231 26 HOH HOH . 
G 4 HOH A 11 232 33 HOH HOH . 
G 4 HOH A 12 233 38 HOH HOH . 
G 4 HOH A 13 234 39 HOH HOH . 
G 4 HOH A 14 235 40 HOH HOH . 
G 4 HOH A 15 236 41 HOH HOH . 
G 4 HOH A 16 237 44 HOH HOH . 
G 4 HOH A 17 238 45 HOH HOH . 
G 4 HOH A 18 239 46 HOH HOH . 
G 4 HOH A 19 240 48 HOH HOH . 
G 4 HOH A 20 241 50 HOH HOH . 
G 4 HOH A 21 242 51 HOH HOH . 
G 4 HOH A 22 243 55 HOH HOH . 
G 4 HOH A 23 244 56 HOH HOH . 
G 4 HOH A 24 245 57 HOH HOH . 
G 4 HOH A 25 246 58 HOH HOH . 
G 4 HOH A 26 247 59 HOH HOH . 
G 4 HOH A 27 248 63 HOH HOH . 
G 4 HOH A 28 249 69 HOH HOH . 
G 4 HOH A 29 250 70 HOH HOH . 
G 4 HOH A 30 251 71 HOH HOH . 
G 4 HOH A 31 252 72 HOH HOH . 
G 4 HOH A 32 253 75 HOH HOH . 
G 4 HOH A 33 254 80 HOH HOH . 
G 4 HOH A 34 255 81 HOH HOH . 
G 4 HOH A 35 256 83 HOH HOH . 
G 4 HOH A 36 257 86 HOH HOH . 
G 4 HOH A 37 258 88 HOH HOH . 
G 4 HOH A 38 259 90 HOH HOH . 
G 4 HOH A 39 260 95 HOH HOH . 
G 4 HOH A 40 261 97 HOH HOH . 
G 4 HOH A 41 262 98 HOH HOH . 
G 4 HOH A 42 263 100 HOH HOH . 
G 4 HOH A 43 264 101 HOH HOH . 
G 4 HOH A 44 265 105 HOH HOH . 
G 4 HOH A 45 266 107 HOH HOH . 
G 4 HOH A 46 267 109 HOH HOH . 
G 4 HOH A 47 268 110 HOH HOH . 
G 4 HOH A 48 269 112 HOH HOH . 
G 4 HOH A 49 270 113 HOH HOH . 
G 4 HOH A 50 271 114 HOH HOH . 
G 4 HOH A 51 272 115 HOH HOH . 
G 4 HOH A 52 273 120 HOH HOH . 
G 4 HOH A 53 274 123 HOH HOH . 
G 4 HOH A 54 275 124 HOH HOH . 
G 4 HOH A 55 276 126 HOH HOH . 
G 4 HOH A 56 277 127 HOH HOH . 
G 4 HOH A 57 278 129 HOH HOH . 
G 4 HOH A 58 279 130 HOH HOH . 
G 4 HOH A 59 280 132 HOH HOH . 
G 4 HOH A 60 281 134 HOH HOH . 
G 4 HOH A 61 282 136 HOH HOH . 
G 4 HOH A 62 283 137 HOH HOH . 
G 4 HOH A 63 284 138 HOH HOH . 
G 4 HOH A 64 285 140 HOH HOH . 
G 4 HOH A 65 286 143 HOH HOH . 
G 4 HOH A 66 287 144 HOH HOH . 
G 4 HOH A 67 288 145 HOH HOH . 
G 4 HOH A 68 289 150 HOH HOH . 
G 4 HOH A 69 290 151 HOH HOH . 
G 4 HOH A 70 291 153 HOH HOH . 
G 4 HOH A 71 292 156 HOH HOH . 
G 4 HOH A 72 293 158 HOH HOH . 
G 4 HOH A 73 294 160 HOH HOH . 
G 4 HOH A 74 295 161 HOH HOH . 
G 4 HOH A 75 296 162 HOH HOH . 
G 4 HOH A 76 297 163 HOH HOH . 
G 4 HOH A 77 298 164 HOH HOH . 
G 4 HOH A 78 299 167 HOH HOH . 
G 4 HOH A 79 300 168 HOH HOH . 
G 4 HOH A 80 301 170 HOH HOH . 
G 4 HOH A 81 302 173 HOH HOH . 
G 4 HOH A 82 303 175 HOH HOH . 
G 4 HOH A 83 304 176 HOH HOH . 
G 4 HOH A 84 305 177 HOH HOH . 
G 4 HOH A 85 306 178 HOH HOH . 
G 4 HOH A 86 307 180 HOH HOH . 
G 4 HOH A 87 308 184 HOH HOH . 
G 4 HOH A 88 309 186 HOH HOH . 
G 4 HOH A 89 310 190 HOH HOH . 
G 4 HOH A 90 311 191 HOH HOH . 
G 4 HOH A 91 312 193 HOH HOH . 
G 4 HOH A 92 313 194 HOH HOH . 
G 4 HOH A 93 314 195 HOH HOH . 
G 4 HOH A 94 315 196 HOH HOH . 
H 4 HOH B 1 224 1 HOH HOH . 
H 4 HOH B 2 225 2 HOH HOH . 
H 4 HOH B 3 226 3 HOH HOH . 
H 4 HOH B 4 227 4 HOH HOH . 
H 4 HOH B 5 228 6 HOH HOH . 
H 4 HOH B 6 229 7 HOH HOH . 
H 4 HOH B 7 230 9 HOH HOH . 
H 4 HOH B 8 231 11 HOH HOH . 
H 4 HOH B 9 232 12 HOH HOH . 
H 4 HOH B 10 233 16 HOH HOH . 
H 4 HOH B 11 234 17 HOH HOH . 
H 4 HOH B 12 235 18 HOH HOH . 
H 4 HOH B 13 236 19 HOH HOH . 
H 4 HOH B 14 237 20 HOH HOH . 
H 4 HOH B 15 238 21 HOH HOH . 
H 4 HOH B 16 239 24 HOH HOH . 
H 4 HOH B 17 240 27 HOH HOH . 
H 4 HOH B 18 241 28 HOH HOH . 
H 4 HOH B 19 242 29 HOH HOH . 
H 4 HOH B 20 243 30 HOH HOH . 
H 4 HOH B 21 244 31 HOH HOH . 
H 4 HOH B 22 245 32 HOH HOH . 
H 4 HOH B 23 246 34 HOH HOH . 
H 4 HOH B 24 247 35 HOH HOH . 
H 4 HOH B 25 248 36 HOH HOH . 
H 4 HOH B 26 249 37 HOH HOH . 
H 4 HOH B 27 250 42 HOH HOH . 
H 4 HOH B 28 251 43 HOH HOH . 
H 4 HOH B 29 252 47 HOH HOH . 
H 4 HOH B 30 253 49 HOH HOH . 
H 4 HOH B 31 254 52 HOH HOH . 
H 4 HOH B 32 255 53 HOH HOH . 
H 4 HOH B 33 256 54 HOH HOH . 
H 4 HOH B 34 257 60 HOH HOH . 
H 4 HOH B 35 258 61 HOH HOH . 
H 4 HOH B 36 259 62 HOH HOH . 
H 4 HOH B 37 260 64 HOH HOH . 
H 4 HOH B 38 261 65 HOH HOH . 
H 4 HOH B 39 262 66 HOH HOH . 
H 4 HOH B 40 263 67 HOH HOH . 
H 4 HOH B 41 264 68 HOH HOH . 
H 4 HOH B 42 265 73 HOH HOH . 
H 4 HOH B 43 266 74 HOH HOH . 
H 4 HOH B 44 267 76 HOH HOH . 
H 4 HOH B 45 268 77 HOH HOH . 
H 4 HOH B 46 269 78 HOH HOH . 
H 4 HOH B 47 270 79 HOH HOH . 
H 4 HOH B 48 271 82 HOH HOH . 
H 4 HOH B 49 272 84 HOH HOH . 
H 4 HOH B 50 273 85 HOH HOH . 
H 4 HOH B 51 274 87 HOH HOH . 
H 4 HOH B 52 275 89 HOH HOH . 
H 4 HOH B 53 276 91 HOH HOH . 
H 4 HOH B 54 277 92 HOH HOH . 
H 4 HOH B 55 278 93 HOH HOH . 
H 4 HOH B 56 279 94 HOH HOH . 
H 4 HOH B 57 280 96 HOH HOH . 
H 4 HOH B 58 281 99 HOH HOH . 
H 4 HOH B 59 282 102 HOH HOH . 
H 4 HOH B 60 283 103 HOH HOH . 
H 4 HOH B 61 284 104 HOH HOH . 
H 4 HOH B 62 285 106 HOH HOH . 
H 4 HOH B 63 286 108 HOH HOH . 
H 4 HOH B 64 287 111 HOH HOH . 
H 4 HOH B 65 288 116 HOH HOH . 
H 4 HOH B 66 289 117 HOH HOH . 
H 4 HOH B 67 290 118 HOH HOH . 
H 4 HOH B 68 291 119 HOH HOH . 
H 4 HOH B 69 292 121 HOH HOH . 
H 4 HOH B 70 293 122 HOH HOH . 
H 4 HOH B 71 294 125 HOH HOH . 
H 4 HOH B 72 295 128 HOH HOH . 
H 4 HOH B 73 296 131 HOH HOH . 
H 4 HOH B 74 297 133 HOH HOH . 
H 4 HOH B 75 298 135 HOH HOH . 
H 4 HOH B 76 299 139 HOH HOH . 
H 4 HOH B 77 300 141 HOH HOH . 
H 4 HOH B 78 301 142 HOH HOH . 
H 4 HOH B 79 302 146 HOH HOH . 
H 4 HOH B 80 303 147 HOH HOH . 
H 4 HOH B 81 304 148 HOH HOH . 
H 4 HOH B 82 305 149 HOH HOH . 
H 4 HOH B 83 306 152 HOH HOH . 
H 4 HOH B 84 307 154 HOH HOH . 
H 4 HOH B 85 308 155 HOH HOH . 
H 4 HOH B 86 309 157 HOH HOH . 
H 4 HOH B 87 310 159 HOH HOH . 
H 4 HOH B 88 311 165 HOH HOH . 
H 4 HOH B 89 312 166 HOH HOH . 
H 4 HOH B 90 313 169 HOH HOH . 
H 4 HOH B 91 314 171 HOH HOH . 
H 4 HOH B 92 315 172 HOH HOH . 
H 4 HOH B 93 316 174 HOH HOH . 
H 4 HOH B 94 317 179 HOH HOH . 
H 4 HOH B 95 318 181 HOH HOH . 
H 4 HOH B 96 319 182 HOH HOH . 
H 4 HOH B 97 320 183 HOH HOH . 
H 4 HOH B 98 321 185 HOH HOH . 
H 4 HOH B 99 322 187 HOH HOH . 
H 4 HOH B 100 323 188 HOH HOH . 
H 4 HOH B 101 324 189 HOH HOH . 
H 4 HOH B 102 325 192 HOH HOH . 
H 4 HOH B 103 326 197 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GAR . . . D 3 8.249 5.87 22.089 1 55.46 ? C1 GAR 221 A 1 
HETATM 2 O O6 GAR . . . D 3 7.719 7.165 21.783 1 54.37 ? O6 GAR 221 A 1 
HETATM 3 C C2 GAR . . . D 3 9.71 5.665 21.661 1 55.83 ? C2 GAR 221 A 1 
HETATM 4 O O8 GAR . . . D 3 10.137 6.417 20.524 1 54.44 ? O8 GAR 221 A 1 
HETATM 5 C C3 GAR . . . D 3 10.542 6.118 22.854 1 56.95 ? C3 GAR 221 A 1 
HETATM 6 O O4 GAR . . . D 3 9.695 6.01 23.982 1 56.76 ? O4 GAR 221 A 1 
HETATM 7 C C5 GAR . . . D 3 8.343 5.826 23.602 1 55.8 ? C5 GAR 221 A 1 
HETATM 8 C C10 GAR . . . D 3 7.859 4.497 24.154 1 54.59 ? C10 GAR 221 A 1 
HETATM 9 O O12 GAR . . . D 3 6.777 4.039 23.365 1 53.66 ? O12 GAR 221 A 1 
HETATM 10 N N19 GAR . . . D 3 11.656 5.251 23.133 1 58.07 ? N19 GAR 221 A 1 
HETATM 11 C C21 GAR . . . D 3 12.822 5.597 23.604 1 59.75 ? C21 GAR 221 A 1 
HETATM 12 O O22 GAR . . . D 3 13.131 6.772 23.852 1 60.49 ? O22 GAR 221 A 1 
HETATM 13 C C23 GAR . . . D 3 13.816 4.47 23.835 1 60.85 ? C23 GAR 221 A 1 
HETATM 14 N N24 GAR . . . D 3 14.915 4.695 24.793 1 61.84 ? N24 GAR 221 A 1 
HETATM 15 P P15 GAR . . . D 3 6.018 2.751 23.677 1 52.91 ? P15 GAR 221 A 1 
HETATM 16 O O16 GAR . . . D 3 6.353 1.992 22.332 1 51.31 ? O16 GAR 221 A 1 
HETATM 17 O O17 GAR . . . D 3 4.443 3.061 23.812 1 50.94 ? O17 GAR 221 A 1 
HETATM 18 O O18 GAR . . . D 3 6.493 2.099 24.852 1 49.8 ? O18 GAR 221 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           18 
#