data_1C3V # _model_server_result.job_id HgqMPCYdzJPZYeUQ2-dNHA _model_server_result.datetime_utc '2024-11-08 01:29:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 1C3V # _exptl.entry_id 1C3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1C3V _cell.length_a 118.831 _cell.length_b 118.257 _cell.length_c 79.377 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_755 -x+2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 237.662 59.1285 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 224 n n PA O2A NDP sing 225 n n PA O5B NDP sing 226 n n PA O3 NDP sing 227 n n O2A HOA2 NDP sing 228 n n O5B C5B NDP sing 229 n n C5B C4B NDP sing 230 n n C5B H51A NDP sing 231 n n C5B H52A NDP sing 232 n n C4B O4B NDP sing 233 n n C4B C3B NDP sing 234 n n C4B H4B NDP sing 235 n n O4B C1B NDP sing 236 n n C3B O3B NDP sing 237 n n C3B C2B NDP sing 238 n n C3B H3B NDP sing 239 n n O3B HO3A NDP sing 240 n n C2B O2B NDP sing 241 n n C2B C1B NDP sing 242 n n C2B H2B NDP sing 243 n n O2B P2B NDP sing 244 n n C1B N9A NDP sing 245 n n C1B H1B NDP sing 246 n n N9A C8A NDP sing 247 n y N9A C4A NDP sing 248 n y C8A N7A NDP doub 249 n y C8A H8A NDP sing 250 n n N7A C5A NDP sing 251 n y C5A C6A NDP sing 252 n y C5A C4A NDP doub 253 n y C6A N6A NDP sing 254 n n C6A N1A NDP doub 255 n y N6A H61A NDP sing 256 n n N6A H62A NDP sing 257 n n N1A C2A NDP sing 258 n y C2A N3A NDP doub 259 n y C2A H2A NDP sing 260 n n N3A C4A NDP sing 261 n y O3 PN NDP sing 262 n n PN O1N NDP doub 263 n n PN O2N NDP sing 264 n n PN O5D NDP sing 265 n n O2N H21N NDP sing 266 n n O5D C5D NDP sing 267 n n C5D C4D NDP sing 268 n n C5D H51N NDP sing 269 n n C5D H52N NDP sing 270 n n C4D O4D NDP sing 271 n n C4D C3D NDP sing 272 n n C4D H4D NDP sing 273 n n O4D C1D NDP sing 274 n n C3D O3D NDP sing 275 n n C3D C2D NDP sing 276 n n C3D H3D NDP sing 277 n n O3D HO3N NDP sing 278 n n C2D O2D NDP sing 279 n n C2D C1D NDP sing 280 n n C2D H2D NDP sing 281 n n O2D HO2N NDP sing 282 n n C1D N1N NDP sing 283 n n C1D H1D NDP sing 284 n n N1N C2N NDP sing 285 n n N1N C6N NDP sing 286 n n C2N C3N NDP doub 287 n n C2N H2N NDP sing 288 n n C3N C7N NDP sing 289 n n C3N C4N NDP sing 290 n n C7N O7N NDP doub 291 n n C7N N7N NDP sing 292 n n N7N H71N NDP sing 293 n n N7N H72N NDP sing 294 n n C4N C5N NDP sing 295 n n C4N H41N NDP sing 296 n n C4N H42N NDP sing 297 n n C5N C6N NDP doub 298 n n C5N H5N NDP sing 299 n n C6N H6N NDP sing 300 n n P2B O1X NDP doub 301 n n P2B O2X NDP sing 302 n n P2B O3X NDP sing 303 n n O2X HOP2 NDP sing 304 n n O3X HOP3 NDP sing 305 n n # _atom_sites.entry_id 1C3V _atom_sites.fract_transf_matrix[1][1] 0.008415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 801 801 NDP NDP . D 3 PDC A 1 802 802 PDC PDC . E 2 NDP B 1 1301 1301 NDP NDP . F 3 PDC B 1 1302 1302 PDC PDC . G 4 PG4 B 1 2000 2000 PG4 PG4 . H 5 HOH A 1 2001 2001 HOH TIP . H 5 HOH A 2 2004 2004 HOH TIP . H 5 HOH A 3 2005 2005 HOH TIP . H 5 HOH A 4 2007 2007 HOH TIP . H 5 HOH A 5 2014 2014 HOH TIP . H 5 HOH A 6 2015 2015 HOH TIP . H 5 HOH A 7 2023 2023 HOH TIP . H 5 HOH A 8 2024 2024 HOH TIP . I 5 HOH B 1 2002 2002 HOH TIP . I 5 HOH B 2 2003 2003 HOH TIP . I 5 HOH B 3 2006 2006 HOH TIP . I 5 HOH B 4 2008 2008 HOH TIP . I 5 HOH B 5 2009 2009 HOH TIP . I 5 HOH B 6 2010 2010 HOH TIP . I 5 HOH B 7 2011 2011 HOH TIP . I 5 HOH B 8 2012 2012 HOH TIP . I 5 HOH B 9 2013 2013 HOH TIP . I 5 HOH B 10 2016 2016 HOH TIP . I 5 HOH B 11 2017 2017 HOH TIP . I 5 HOH B 12 2018 2018 HOH TIP . I 5 HOH B 13 2019 2019 HOH TIP . I 5 HOH B 14 2020 2020 HOH TIP . I 5 HOH B 15 2021 2021 HOH TIP . I 5 HOH B 16 2022 2022 HOH TIP . I 5 HOH B 17 2025 2025 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 138.811 16.273 24.811 1 45.76 ? PA NDP 801 A 1 HETATM 2 O O1A NDP . . . C 2 139.087 15.439 23.617 1 45.45 ? O1A NDP 801 A 1 HETATM 3 O O2A NDP . . . C 2 137.595 15.971 25.603 1 46.88 ? O2A NDP 801 A 1 HETATM 4 O O5B NDP . . . C 2 140.081 16.335 25.751 1 49.25 ? O5B NDP 801 A 1 HETATM 5 C C5B NDP . . . C 2 141.39 16.464 25.021 1 51.35 ? C5B NDP 801 A 1 HETATM 6 C C4B NDP . . . C 2 142.587 15.633 25.418 1 55.4 ? C4B NDP 801 A 1 HETATM 7 O O4B NDP . . . C 2 143.249 16.252 26.571 1 56.29 ? O4B NDP 801 A 1 HETATM 8 C C3B NDP . . . C 2 142.118 14.211 25.939 1 57.11 ? C3B NDP 801 A 1 HETATM 9 O O3B NDP . . . C 2 142.92 13.309 25.2 1 58.22 ? O3B NDP 801 A 1 HETATM 10 C C2B NDP . . . C 2 142.698 14.113 27.343 1 58.65 ? C2B NDP 801 A 1 HETATM 11 O O2B NDP . . . C 2 142.868 12.859 27.978 1 62.55 ? O2B NDP 801 A 1 HETATM 12 C C1B NDP . . . C 2 143.627 15.228 27.472 1 57.64 ? C1B NDP 801 A 1 HETATM 13 N N9A NDP . . . C 2 144.627 15.455 28.536 1 58.34 ? N9A NDP 801 A 1 HETATM 14 C C8A NDP . . . C 2 144.059 15.698 29.74 1 59.06 ? C8A NDP 801 A 1 HETATM 15 N N7A NDP . . . C 2 144.932 16.151 30.68 1 58.37 ? N7A NDP 801 A 1 HETATM 16 C C5A NDP . . . C 2 146.074 16.069 30.011 1 58.75 ? C5A NDP 801 A 1 HETATM 17 C C6A NDP . . . C 2 147.314 16.375 30.499 1 58.96 ? C6A NDP 801 A 1 HETATM 18 N N6A NDP . . . C 2 147.508 16.827 31.736 1 59.14 ? N6A NDP 801 A 1 HETATM 19 N N1A NDP . . . C 2 148.397 16.221 29.692 1 58.69 ? N1A NDP 801 A 1 HETATM 20 C C2A NDP . . . C 2 148.118 15.945 28.396 1 58.37 ? C2A NDP 801 A 1 HETATM 21 N N3A NDP . . . C 2 146.936 15.482 27.92 1 59.59 ? N3A NDP 801 A 1 HETATM 22 C C4A NDP . . . C 2 145.906 15.652 28.765 1 58.77 ? C4A NDP 801 A 1 HETATM 23 O O3 NDP . . . C 2 138.73 17.822 24.348 1 44.29 ? O3 NDP 801 A 1 HETATM 24 P PN NDP . . . C 2 138.528 18.467 22.887 1 40.5 ? PN NDP 801 A 1 HETATM 25 O O1N NDP . . . C 2 137.069 18.548 22.622 1 41.22 ? O1N NDP 801 A 1 HETATM 26 O O2N NDP . . . C 2 139.368 17.7 21.936 1 41.19 ? O2N NDP 801 A 1 HETATM 27 O O5D NDP . . . C 2 139.128 19.92 23.088 1 38 ? O5D NDP 801 A 1 HETATM 28 C C5D NDP . . . C 2 139.687 20.218 24.458 1 33.74 ? C5D NDP 801 A 1 HETATM 29 C C4D NDP . . . C 2 139.782 21.639 24.978 1 32.87 ? C4D NDP 801 A 1 HETATM 30 O O4D NDP . . . C 2 140.106 22.565 23.89 1 33.64 ? O4D NDP 801 A 1 HETATM 31 C C3D NDP . . . C 2 138.519 22.208 25.608 1 33.68 ? C3D NDP 801 A 1 HETATM 32 O O3D NDP . . . C 2 138.816 23.155 26.606 1 34.73 ? O3D NDP 801 A 1 HETATM 33 C C2D NDP . . . C 2 137.843 22.85 24.396 1 34.13 ? C2D NDP 801 A 1 HETATM 34 O O2D NDP . . . C 2 136.834 23.768 24.774 1 34.66 ? O2D NDP 801 A 1 HETATM 35 C C1D NDP . . . C 2 139.028 23.539 23.736 1 32.78 ? C1D NDP 801 A 1 HETATM 36 N N1N NDP . . . C 2 138.867 23.828 22.295 1 29.77 ? N1N NDP 801 A 1 HETATM 37 C C2N NDP . . . C 2 139.287 25.024 21.818 1 29.05 ? C2N NDP 801 A 1 HETATM 38 C C3N NDP . . . C 2 139.244 25.422 20.531 1 28.21 ? C3N NDP 801 A 1 HETATM 39 C C7N NDP . . . C 2 139.711 26.632 20.054 1 29.53 ? C7N NDP 801 A 1 HETATM 40 O O7N NDP . . . C 2 139.618 26.926 18.655 1 31.97 ? O7N NDP 801 A 1 HETATM 41 N N7N NDP . . . C 2 140.239 27.451 20.966 1 30.24 ? N7N NDP 801 A 1 HETATM 42 C C4N NDP . . . C 2 138.704 24.474 19.711 1 25.21 ? C4N NDP 801 A 1 HETATM 43 C C5N NDP . . . C 2 138.236 23.218 20.1 1 25.83 ? C5N NDP 801 A 1 HETATM 44 C C6N NDP . . . C 2 138.332 22.894 21.465 1 27.93 ? C6N NDP 801 A 1 HETATM 45 P P2B NDP . . . C 2 141.735 12.277 28.904 1 63.93 ? P2B NDP 801 A 1 HETATM 46 O O1X NDP . . . C 2 141.942 12.904 30.239 1 63.71 ? O1X NDP 801 A 1 HETATM 47 O O2X NDP . . . C 2 140.443 12.677 28.279 1 63.03 ? O2X NDP 801 A 1 HETATM 48 O O3X NDP . . . C 2 141.938 10.808 28.913 1 63.91 ? O3X NDP 801 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #