data_1C3V # _model_server_result.job_id 4VmyYUQ6BFGgkscmayt92Q _model_server_result.datetime_utc '2024-12-16 07:28:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 1C3V # _exptl.entry_id 1C3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.119 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRIDINE-2,6-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1C3V _cell.length_a 118.831 _cell.length_b 118.257 _cell.length_c 79.377 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_755 -x+2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 237.662 59.1285 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C7 H5 N O4' _chem_comp.formula_weight 167.119 _chem_comp.id PDC _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRIDINE-2,6-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DIPICOLINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PDC doub 306 n y N1 C6 PDC sing 307 n y C2 C3 PDC sing 308 n y C2 C7 PDC sing 309 n n C3 C4 PDC doub 310 n y C3 H3 PDC sing 311 n n C4 C5 PDC sing 312 n y C4 H4 PDC sing 313 n n C5 C6 PDC doub 314 n y C5 H5 PDC sing 315 n n C6 C8 PDC sing 316 n n C7 O1 PDC doub 317 n n C7 O2 PDC sing 318 n n O2 HO2 PDC sing 319 n n C8 O3 PDC doub 320 n n C8 O4 PDC sing 321 n n O4 HO4 PDC sing 322 n n # _atom_sites.entry_id 1C3V _atom_sites.fract_transf_matrix[1][1] 0.008415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 801 801 NDP NDP . D 3 PDC A 1 802 802 PDC PDC . E 2 NDP B 1 1301 1301 NDP NDP . F 3 PDC B 1 1302 1302 PDC PDC . G 4 PG4 B 1 2000 2000 PG4 PG4 . H 5 HOH A 1 2001 2001 HOH TIP . H 5 HOH A 2 2004 2004 HOH TIP . H 5 HOH A 3 2005 2005 HOH TIP . H 5 HOH A 4 2007 2007 HOH TIP . H 5 HOH A 5 2014 2014 HOH TIP . H 5 HOH A 6 2015 2015 HOH TIP . H 5 HOH A 7 2023 2023 HOH TIP . H 5 HOH A 8 2024 2024 HOH TIP . I 5 HOH B 1 2002 2002 HOH TIP . I 5 HOH B 2 2003 2003 HOH TIP . I 5 HOH B 3 2006 2006 HOH TIP . I 5 HOH B 4 2008 2008 HOH TIP . I 5 HOH B 5 2009 2009 HOH TIP . I 5 HOH B 6 2010 2010 HOH TIP . I 5 HOH B 7 2011 2011 HOH TIP . I 5 HOH B 8 2012 2012 HOH TIP . I 5 HOH B 9 2013 2013 HOH TIP . I 5 HOH B 10 2016 2016 HOH TIP . I 5 HOH B 11 2017 2017 HOH TIP . I 5 HOH B 12 2018 2018 HOH TIP . I 5 HOH B 13 2019 2019 HOH TIP . I 5 HOH B 14 2020 2020 HOH TIP . I 5 HOH B 15 2021 2021 HOH TIP . I 5 HOH B 16 2022 2022 HOH TIP . I 5 HOH B 17 2025 2025 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PDC . . . D 3 134.783 25.174 22.433 1 18.93 ? N1 PDC 802 A 1 HETATM 2 C C2 PDC . . . D 3 134.901 26.569 22.108 1 15.93 ? C2 PDC 802 A 1 HETATM 3 C C3 PDC . . . D 3 135.035 26.965 20.754 1 15.29 ? C3 PDC 802 A 1 HETATM 4 C C4 PDC . . . D 3 135.04 25.988 19.735 1 15.4 ? C4 PDC 802 A 1 HETATM 5 C C5 PDC . . . D 3 134.93 24.612 20.044 1 17.41 ? C5 PDC 802 A 1 HETATM 6 C C6 PDC . . . D 3 134.801 24.182 21.406 1 21.5 ? C6 PDC 802 A 1 HETATM 7 C C7 PDC . . . D 3 134.878 27.474 23.148 1 16.44 ? C7 PDC 802 A 1 HETATM 8 O O1 PDC . . . D 3 134.754 27.05 24.433 1 20.46 ? O1 PDC 802 A 1 HETATM 9 O O2 PDC . . . D 3 134.981 28.812 22.899 1 19.61 ? O2 PDC 802 A 1 HETATM 10 C C8 PDC . . . D 3 134.67 22.826 21.782 1 23.22 ? C8 PDC 802 A 1 HETATM 11 O O3 PDC . . . D 3 134.552 22.458 23.097 1 24.53 ? O3 PDC 802 A 1 HETATM 12 O O4 PDC . . . D 3 134.679 21.841 20.828 1 26.3 ? O4 PDC 802 A 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 444 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #