data_1C3W
#
_model_server_result.job_id            JLWvHETyOFVkPiFBS2Porw 
_model_server_result.datetime_utc      '2024-11-26 17:00:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1c3w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":609}' 
#
_entry.id    1C3W 
#
_exptl.entry_id    1C3W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              639.13 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1C3W 
_cell.length_a            60.631 
_cell.length_b            60.631 
_cell.length_c            108.156 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1C3W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.3155 52.507986 0 
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.3155 52.507986 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             207 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            P 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.337 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C42 H86 O3' 
_chem_comp.formula_weight    639.13 
_chem_comp.id                LI1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LI1 sing 160 n n 
C1 O1 LI1 sing 161 n n 
C1 H11 LI1 sing 162 n n 
C1 H12 LI1 sing 163 n n 
C2 C3 LI1 sing 164 n n 
C2 O2 LI1 sing 165 n n 
C2 H2 LI1 sing 166 n n 
C3 O3 LI1 sing 167 n n 
C3 H31 LI1 sing 168 n n 
C3 H32 LI1 sing 169 n n 
O1 C11 LI1 sing 170 n n 
O2 C41 LI1 sing 171 n n 
O3 HO3 LI1 sing 172 n n 
C41 C42 LI1 sing 173 n n 
C41 H411 LI1 sing 174 n n 
C41 H412 LI1 sing 175 n n 
C42 C43 LI1 sing 176 n n 
C42 H421 LI1 sing 177 n n 
C42 H422 LI1 sing 178 n n 
C43 C44 LI1 sing 179 n n 
C43 C45 LI1 sing 180 n n 
C43 H43 LI1 sing 181 n n 
C44 H441 LI1 sing 182 n n 
C44 H442 LI1 sing 183 n n 
C44 H443 LI1 sing 184 n n 
C45 C46 LI1 sing 185 n n 
C45 H451 LI1 sing 186 n n 
C45 H452 LI1 sing 187 n n 
C46 C47 LI1 sing 188 n n 
C46 H461 LI1 sing 189 n n 
C46 H462 LI1 sing 190 n n 
C47 C48 LI1 sing 191 n n 
C47 H471 LI1 sing 192 n n 
C47 H472 LI1 sing 193 n n 
C48 C49 LI1 sing 194 n n 
C48 C50 LI1 sing 195 n n 
C48 H48 LI1 sing 196 n n 
C49 H491 LI1 sing 197 n n 
C49 H492 LI1 sing 198 n n 
C49 H493 LI1 sing 199 n n 
C50 C51 LI1 sing 200 n n 
C50 H501 LI1 sing 201 n n 
C50 H502 LI1 sing 202 n n 
C51 C52 LI1 sing 203 n n 
C51 H511 LI1 sing 204 n n 
C51 H512 LI1 sing 205 n n 
C52 C53 LI1 sing 206 n n 
C52 H521 LI1 sing 207 n n 
C52 H522 LI1 sing 208 n n 
C53 C55 LI1 sing 209 n n 
C53 H531 LI1 sing 210 n n 
C53 H532 LI1 sing 211 n n 
C55 C56 LI1 sing 212 n n 
C55 H551 LI1 sing 213 n n 
C55 H552 LI1 sing 214 n n 
C56 C57 LI1 sing 215 n n 
C56 H561 LI1 sing 216 n n 
C56 H562 LI1 sing 217 n n 
C57 C58 LI1 sing 218 n n 
C57 H571 LI1 sing 219 n n 
C57 H572 LI1 sing 220 n n 
C58 C59 LI1 sing 221 n n 
C58 C60 LI1 sing 222 n n 
C58 H58 LI1 sing 223 n n 
C59 H591 LI1 sing 224 n n 
C59 H592 LI1 sing 225 n n 
C59 H593 LI1 sing 226 n n 
C60 H601 LI1 sing 227 n n 
C60 H602 LI1 sing 228 n n 
C60 H603 LI1 sing 229 n n 
C11 C12 LI1 sing 230 n n 
C11 H111 LI1 sing 231 n n 
C11 H112 LI1 sing 232 n n 
C12 C13 LI1 sing 233 n n 
C12 H121 LI1 sing 234 n n 
C12 H122 LI1 sing 235 n n 
C13 C14 LI1 sing 236 n n 
C13 C15 LI1 sing 237 n n 
C13 H13 LI1 sing 238 n n 
C14 H141 LI1 sing 239 n n 
C14 H142 LI1 sing 240 n n 
C14 H143 LI1 sing 241 n n 
C15 C16 LI1 sing 242 n n 
C15 H151 LI1 sing 243 n n 
C15 H152 LI1 sing 244 n n 
C16 C17 LI1 sing 245 n n 
C16 H161 LI1 sing 246 n n 
C16 H162 LI1 sing 247 n n 
C17 C18 LI1 sing 248 n n 
C17 H171 LI1 sing 249 n n 
C17 H172 LI1 sing 250 n n 
C18 C19 LI1 sing 251 n n 
C18 C20 LI1 sing 252 n n 
C18 H18 LI1 sing 253 n n 
C19 H191 LI1 sing 254 n n 
C19 H192 LI1 sing 255 n n 
C19 H193 LI1 sing 256 n n 
C20 C21 LI1 sing 257 n n 
C20 H201 LI1 sing 258 n n 
C20 H202 LI1 sing 259 n n 
C21 C22 LI1 sing 260 n n 
C21 H211 LI1 sing 261 n n 
C21 H212 LI1 sing 262 n n 
C22 C23 LI1 sing 263 n n 
C22 H221 LI1 sing 264 n n 
C22 H222 LI1 sing 265 n n 
C23 C24 LI1 sing 266 n n 
C23 C25 LI1 sing 267 n n 
C23 H23 LI1 sing 268 n n 
C24 H241 LI1 sing 269 n n 
C24 H242 LI1 sing 270 n n 
C24 H243 LI1 sing 271 n n 
C25 C26 LI1 sing 272 n n 
C25 H251 LI1 sing 273 n n 
C25 H252 LI1 sing 274 n n 
C26 C27 LI1 sing 275 n n 
C26 H261 LI1 sing 276 n n 
C26 H262 LI1 sing 277 n n 
C27 C28 LI1 sing 278 n n 
C27 H271 LI1 sing 279 n n 
C27 H272 LI1 sing 280 n n 
C28 C29 LI1 sing 281 n n 
C28 C30 LI1 sing 282 n n 
C28 H28 LI1 sing 283 n n 
C29 H291 LI1 sing 284 n n 
C29 H292 LI1 sing 285 n n 
C29 H293 LI1 sing 286 n n 
C30 H301 LI1 sing 287 n n 
C30 H302 LI1 sing 288 n n 
C30 H303 LI1 sing 289 n n 
#
_atom_sites.entry_id                     1C3W 
_atom_sites.fract_transf_matrix[1][1]    0.016493 
_atom_sites.fract_transf_matrix[1][2]    0.009522 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019045 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009246 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LI1 A 1 601 601 LI1 LI1 . 
C 2 LI1 A 1 602 602 LI1 LI1 . 
D 2 LI1 A 1 603 603 LI1 LI1 . 
E 2 LI1 A 1 604 604 LI1 LI1 . 
F 2 LI1 A 1 605 605 LI1 LI1 . 
G 2 LI1 A 1 606 606 LI1 LI1 . 
H 2 LI1 A 1 607 607 LI1 LI1 . 
I 2 LI1 A 1 608 608 LI1 LI1 . 
J 2 LI1 A 1 609 609 LI1 LI1 . 
K 2 LI1 A 1 610 610 LI1 LI1 . 
L 2 LI1 A 1 611 611 LI1 LI1 . 
M 2 LI1 A 1 612 612 LI1 LI1 . 
N 2 LI1 A 1 613 613 LI1 LI1 . 
O 3 SQU A 1 701 701 SQU SQU . 
P 4 RET A 1 301 301 RET RET . 
Q 5 HOH A 1 401 401 HOH HOH . 
Q 5 HOH A 2 402 402 HOH HOH . 
Q 5 HOH A 3 403 403 HOH HOH . 
Q 5 HOH A 4 404 404 HOH HOH . 
Q 5 HOH A 5 405 405 HOH HOH . 
Q 5 HOH A 6 406 406 HOH HOH . 
Q 5 HOH A 7 407 407 HOH HOH . 
Q 5 HOH A 8 411 411 HOH HOH . 
Q 5 HOH A 9 412 412 HOH HOH . 
Q 5 HOH A 10 413 413 HOH HOH . 
Q 5 HOH A 11 414 414 HOH HOH . 
Q 5 HOH A 12 415 415 HOH HOH . 
Q 5 HOH A 13 416 416 HOH HOH . 
Q 5 HOH A 14 417 417 HOH HOH . 
Q 5 HOH A 15 418 418 HOH HOH . 
Q 5 HOH A 16 419 419 HOH HOH . 
Q 5 HOH A 17 420 420 HOH HOH . 
Q 5 HOH A 18 501 501 HOH HOH . 
Q 5 HOH A 19 502 502 HOH HOH . 
Q 5 HOH A 20 511 511 HOH HOH . 
Q 5 HOH A 21 512 512 HOH HOH . 
Q 5 HOH A 22 513 513 HOH HOH . 
Q 5 HOH A 23 514 514 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 LI1 . . . J 2 23.412 57.848 21.604 1 50.29 ? C11 LI1 609 A 1 
HETATM 2 C C12 LI1 . . . J 2 22.7 57.246 20.37 1 46.95 ? C12 LI1 609 A 1 
HETATM 3 C C13 LI1 . . . J 2 22.921 58.162 19.161 1 46.43 ? C13 LI1 609 A 1 
HETATM 4 C C15 LI1 . . . J 2 21.822 57.873 18.119 1 47.21 ? C15 LI1 609 A 1 
HETATM 5 C C16 LI1 . . . J 2 22.481 57.679 16.745 1 48.25 ? C16 LI1 609 A 1 
HETATM 6 C C17 LI1 . . . J 2 21.779 58.562 15.692 1 47.98 ? C17 LI1 609 A 1 
HETATM 7 C C18 LI1 . . . J 2 22.627 58.495 14.411 1 49.79 ? C18 LI1 609 A 1 
HETATM 8 C C20 LI1 . . . J 2 21.734 58.137 13.212 1 50.96 ? C20 LI1 609 A 1 
HETATM 9 C C21 LI1 . . . J 2 22.424 58.592 11.923 1 51.33 ? C21 LI1 609 A 1 
HETATM 10 C C22 LI1 . . . J 2 21.375 58.874 10.831 1 54.8 ? C22 LI1 609 A 1 
HETATM 11 C C23 LI1 . . . J 2 21.739 58.007 9.603 1 58.77 ? C23 LI1 609 A 1 
HETATM 12 C C25 LI1 . . . J 2 20.521 57.911 8.675 1 62 ? C25 LI1 609 A 1 
HETATM 13 C C26 LI1 . . . J 2 20.707 56.759 7.659 1 64.51 ? C26 LI1 609 A 1 
HETATM 14 C C27 LI1 . . . J 2 19.796 57.082 6.448 1 66.35 ? C27 LI1 609 A 1 
HETATM 15 C C28 LI1 . . . J 2 19.943 55.95 5.389 1 66.89 ? C28 LI1 609 A 1 
HETATM 16 C C30 LI1 . . . J 2 19.22 56.427 4.105 1 65.98 ? C30 LI1 609 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#