data_1C40
#
_model_server_result.job_id            NuasB4hsIKx7YzBKuNKZ_Q 
_model_server_result.datetime_utc      '2024-11-18 09:20:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1c40 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":150}' 
#
_entry.id    1C40 
#
_exptl.entry_id    1C40 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1C40 
_cell.length_a            81.497 
_cell.length_b            81.497 
_cell.length_c            107.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1C40 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 81.497 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc2 C FE HEM . A HEM 150 1_555 E O HOH . A HOH 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 D FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc4 D FE HEM . B HEM 150 1_555 F O HOH . B HOH 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1C40 
_atom_sites.fract_transf_matrix[1][1]    0.01227 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01227 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 150 150 HEM HEM . 
D 3 HEM B 1 150 150 HEM HEM . 
E 4 HOH A 1 151 151 HOH HOH . 
E 4 HOH A 2 152 1 HOH HOH . 
E 4 HOH A 3 153 2 HOH HOH . 
E 4 HOH A 4 154 3 HOH HOH . 
E 4 HOH A 5 155 8 HOH HOH . 
E 4 HOH A 6 156 10 HOH HOH . 
E 4 HOH A 7 157 12 HOH HOH . 
E 4 HOH A 8 158 15 HOH HOH . 
E 4 HOH A 9 159 16 HOH HOH . 
E 4 HOH A 10 160 20 HOH HOH . 
E 4 HOH A 11 161 22 HOH HOH . 
E 4 HOH A 12 162 24 HOH HOH . 
E 4 HOH A 13 163 25 HOH HOH . 
E 4 HOH A 14 164 26 HOH HOH . 
E 4 HOH A 15 165 27 HOH HOH . 
E 4 HOH A 16 166 28 HOH HOH . 
E 4 HOH A 17 167 29 HOH HOH . 
E 4 HOH A 18 168 30 HOH HOH . 
E 4 HOH A 19 169 33 HOH HOH . 
E 4 HOH A 20 170 35 HOH HOH . 
E 4 HOH A 21 171 40 HOH HOH . 
E 4 HOH A 22 172 42 HOH HOH . 
E 4 HOH A 23 173 43 HOH HOH . 
E 4 HOH A 24 174 45 HOH HOH . 
E 4 HOH A 25 175 47 HOH HOH . 
E 4 HOH A 26 176 48 HOH HOH . 
E 4 HOH A 27 177 50 HOH HOH . 
E 4 HOH A 28 178 55 HOH HOH . 
E 4 HOH A 29 179 57 HOH HOH . 
F 4 HOH B 1 151 151 HOH HOH . 
F 4 HOH B 2 152 4 HOH HOH . 
F 4 HOH B 3 153 5 HOH HOH . 
F 4 HOH B 4 154 6 HOH HOH . 
F 4 HOH B 5 155 7 HOH HOH . 
F 4 HOH B 6 156 9 HOH HOH . 
F 4 HOH B 7 157 11 HOH HOH . 
F 4 HOH B 8 158 13 HOH HOH . 
F 4 HOH B 9 159 14 HOH HOH . 
F 4 HOH B 10 160 17 HOH HOH . 
F 4 HOH B 11 161 18 HOH HOH . 
F 4 HOH B 12 162 19 HOH HOH . 
F 4 HOH B 13 163 21 HOH HOH . 
F 4 HOH B 14 164 23 HOH HOH . 
F 4 HOH B 15 165 31 HOH HOH . 
F 4 HOH B 16 166 32 HOH HOH . 
F 4 HOH B 17 167 34 HOH HOH . 
F 4 HOH B 18 168 36 HOH HOH . 
F 4 HOH B 19 169 37 HOH HOH . 
F 4 HOH B 20 170 38 HOH HOH . 
F 4 HOH B 21 171 39 HOH HOH . 
F 4 HOH B 22 172 41 HOH HOH . 
F 4 HOH B 23 173 44 HOH HOH . 
F 4 HOH B 24 174 46 HOH HOH . 
F 4 HOH B 25 175 49 HOH HOH . 
F 4 HOH B 26 176 51 HOH HOH . 
F 4 HOH B 27 177 52 HOH HOH . 
F 4 HOH B 28 178 53 HOH HOH . 
F 4 HOH B 29 179 54 HOH HOH . 
F 4 HOH B 30 180 56 HOH HOH . 
F 4 HOH B 31 181 58 HOH HOH . 
F 4 HOH B 32 182 59 HOH HOH . 
F 4 HOH B 33 183 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 -20.027 46.895 11.924 1 12.44 ? CHA HEM 150 A 1 
HETATM 2 C CHB HEM . . . C 3 -18.121 42.782 10.369 1 12.46 ? CHB HEM 150 A 1 
HETATM 3 C CHC HEM . . . C 3 -15.196 42.799 14.181 1 14.47 ? CHC HEM 150 A 1 
HETATM 4 C CHD HEM . . . C 3 -17.504 46.571 15.981 1 13.16 ? CHD HEM 150 A 1 
HETATM 5 C C1A HEM . . . C 3 -19.713 45.823 11.131 1 14.2 ? C1A HEM 150 A 1 
HETATM 6 C C2A HEM . . . C 3 -20.479 45.421 9.965 1 20.41 ? C2A HEM 150 A 1 
HETATM 7 C C3A HEM . . . C 3 -19.906 44.289 9.487 1 18.31 ? C3A HEM 150 A 1 
HETATM 8 C C4A HEM . . . C 3 -18.875 43.949 10.434 1 16.82 ? C4A HEM 150 A 1 
HETATM 9 C CMA HEM . . . C 3 -20.326 43.473 8.267 1 15.53 ? CMA HEM 150 A 1 
HETATM 10 C CAA HEM . . . C 3 -21.862 45.911 9.61 1 20.8 ? CAA HEM 150 A 1 
HETATM 11 C CBA HEM . . . C 3 -21.894 46.878 8.458 1 28.7 ? CBA HEM 150 A 1 
HETATM 12 C CGA HEM . . . C 3 -23.301 47.369 8.154 1 35.91 ? CGA HEM 150 A 1 
HETATM 13 O O1A HEM . . . C 3 -23.459 48.06 7.126 1 40.68 ? O1A HEM 150 A 1 
HETATM 14 O O2A HEM . . . C 3 -24.244 47.075 8.935 1 33.97 ? O2A HEM 150 A 1 
HETATM 15 C C1B HEM . . . C 3 -17.149 42.424 11.268 1 9.36 ? C1B HEM 150 A 1 
HETATM 16 C C2B HEM . . . C 3 -16.226 41.318 11.082 1 13.38 ? C2B HEM 150 A 1 
HETATM 17 C C3B HEM . . . C 3 -15.378 41.348 12.147 1 9.81 ? C3B HEM 150 A 1 
HETATM 18 C C4B HEM . . . C 3 -15.794 42.465 12.951 1 11.54 ? C4B HEM 150 A 1 
HETATM 19 C CMB HEM . . . C 3 -16.142 40.385 9.856 1 6.53 ? CMB HEM 150 A 1 
HETATM 20 C CAB HEM . . . C 3 -14.255 40.57 12.418 1 5.36 ? CAB HEM 150 A 1 
HETATM 21 C CBB HEM . . . C 3 -14.005 39.166 11.929 1 7.72 ? CBB HEM 150 A 1 
HETATM 22 C C1C HEM . . . C 3 -15.486 43.842 15.02 1 7.47 ? C1C HEM 150 A 1 
HETATM 23 C C2C HEM . . . C 3 -15.002 43.935 16.388 1 9.3 ? C2C HEM 150 A 1 
HETATM 24 C C3C HEM . . . C 3 -15.69 44.995 16.941 1 11.41 ? C3C HEM 150 A 1 
HETATM 25 C C4C HEM . . . C 3 -16.585 45.516 15.86 1 14.1 ? C4C HEM 150 A 1 
HETATM 26 C CMC HEM . . . C 3 -13.985 42.996 17.079 1 7.78 ? CMC HEM 150 A 1 
HETATM 27 C CAC HEM . . . C 3 -15.586 45.541 18.238 1 7.4 ? CAC HEM 150 A 1 
HETATM 28 C CBC HEM . . . C 3 -15.483 44.807 19.559 1 5.96 ? CBC HEM 150 A 1 
HETATM 29 C C1D HEM . . . C 3 -18.411 47.003 15.034 1 11.47 ? C1D HEM 150 A 1 
HETATM 30 C C2D HEM . . . C 3 -19.415 48.044 15.24 1 14.81 ? C2D HEM 150 A 1 
HETATM 31 C C3D HEM . . . C 3 -20.104 48.125 14.052 1 13.55 ? C3D HEM 150 A 1 
HETATM 32 C C4D HEM . . . C 3 -19.524 47.172 13.17 1 13.69 ? C4D HEM 150 A 1 
HETATM 33 C CMD HEM . . . C 3 -19.642 48.862 16.529 1 9.01 ? CMD HEM 150 A 1 
HETATM 34 C CAD HEM . . . C 3 -21.311 48.983 13.686 1 18.56 ? CAD HEM 150 A 1 
HETATM 35 C CBD HEM . . . C 3 -22.577 48.325 14.186 1 25.91 ? CBD HEM 150 A 1 
HETATM 36 C CGD HEM . . . C 3 -23.807 49.154 13.909 1 26.96 ? CGD HEM 150 A 1 
HETATM 37 O O1D HEM . . . C 3 -23.785 50.364 14.205 1 27.01 ? O1D HEM 150 A 1 
HETATM 38 O O2D HEM . . . C 3 -24.8 48.59 13.406 1 33.42 ? O2D HEM 150 A 1 
HETATM 39 N NA HEM . . . C 3 -18.772 44.902 11.448 1 10.14 ? NA HEM 150 A 1 
HETATM 40 N NB HEM . . . C 3 -16.842 43.144 12.39 1 7.06 ? NB HEM 150 A 1 
HETATM 41 N NC HEM . . . C 3 -16.464 44.766 14.708 1 10.48 ? NC HEM 150 A 1 
HETATM 42 N ND HEM . . . C 3 -18.52 46.448 13.783 1 12.27 ? ND HEM 150 A 1 
HETATM 43 FE FE HEM . . . C 3 -17.62 44.843 13.06 1 11.23 ? FE HEM 150 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           416 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#