data_1C40
#
_model_server_result.job_id            a1dOq4_6RtfKoNQyvST86g 
_model_server_result.datetime_utc      '2025-02-27 02:14:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1c40 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":150}' 
#
_entry.id    1C40 
#
_exptl.entry_id    1C40 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1C40 
_cell.length_a            81.497 
_cell.length_b            81.497 
_cell.length_c            107.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1C40 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 81.497 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc2 C FE HEM . A HEM 150 1_555 E O HOH . A HOH 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 D FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc4 D FE HEM . B HEM 150 1_555 F O HOH . B HOH 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1C40 
_atom_sites.fract_transf_matrix[1][1]    0.01227 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01227 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 150 150 HEM HEM . 
D 3 HEM B 1 150 150 HEM HEM . 
E 4 HOH A 1 151 151 HOH HOH . 
E 4 HOH A 2 152 1 HOH HOH . 
E 4 HOH A 3 153 2 HOH HOH . 
E 4 HOH A 4 154 3 HOH HOH . 
E 4 HOH A 5 155 8 HOH HOH . 
E 4 HOH A 6 156 10 HOH HOH . 
E 4 HOH A 7 157 12 HOH HOH . 
E 4 HOH A 8 158 15 HOH HOH . 
E 4 HOH A 9 159 16 HOH HOH . 
E 4 HOH A 10 160 20 HOH HOH . 
E 4 HOH A 11 161 22 HOH HOH . 
E 4 HOH A 12 162 24 HOH HOH . 
E 4 HOH A 13 163 25 HOH HOH . 
E 4 HOH A 14 164 26 HOH HOH . 
E 4 HOH A 15 165 27 HOH HOH . 
E 4 HOH A 16 166 28 HOH HOH . 
E 4 HOH A 17 167 29 HOH HOH . 
E 4 HOH A 18 168 30 HOH HOH . 
E 4 HOH A 19 169 33 HOH HOH . 
E 4 HOH A 20 170 35 HOH HOH . 
E 4 HOH A 21 171 40 HOH HOH . 
E 4 HOH A 22 172 42 HOH HOH . 
E 4 HOH A 23 173 43 HOH HOH . 
E 4 HOH A 24 174 45 HOH HOH . 
E 4 HOH A 25 175 47 HOH HOH . 
E 4 HOH A 26 176 48 HOH HOH . 
E 4 HOH A 27 177 50 HOH HOH . 
E 4 HOH A 28 178 55 HOH HOH . 
E 4 HOH A 29 179 57 HOH HOH . 
F 4 HOH B 1 151 151 HOH HOH . 
F 4 HOH B 2 152 4 HOH HOH . 
F 4 HOH B 3 153 5 HOH HOH . 
F 4 HOH B 4 154 6 HOH HOH . 
F 4 HOH B 5 155 7 HOH HOH . 
F 4 HOH B 6 156 9 HOH HOH . 
F 4 HOH B 7 157 11 HOH HOH . 
F 4 HOH B 8 158 13 HOH HOH . 
F 4 HOH B 9 159 14 HOH HOH . 
F 4 HOH B 10 160 17 HOH HOH . 
F 4 HOH B 11 161 18 HOH HOH . 
F 4 HOH B 12 162 19 HOH HOH . 
F 4 HOH B 13 163 21 HOH HOH . 
F 4 HOH B 14 164 23 HOH HOH . 
F 4 HOH B 15 165 31 HOH HOH . 
F 4 HOH B 16 166 32 HOH HOH . 
F 4 HOH B 17 167 34 HOH HOH . 
F 4 HOH B 18 168 36 HOH HOH . 
F 4 HOH B 19 169 37 HOH HOH . 
F 4 HOH B 20 170 38 HOH HOH . 
F 4 HOH B 21 171 39 HOH HOH . 
F 4 HOH B 22 172 41 HOH HOH . 
F 4 HOH B 23 173 44 HOH HOH . 
F 4 HOH B 24 174 46 HOH HOH . 
F 4 HOH B 25 175 49 HOH HOH . 
F 4 HOH B 26 176 51 HOH HOH . 
F 4 HOH B 27 177 52 HOH HOH . 
F 4 HOH B 28 178 53 HOH HOH . 
F 4 HOH B 29 179 54 HOH HOH . 
F 4 HOH B 30 180 56 HOH HOH . 
F 4 HOH B 31 181 58 HOH HOH . 
F 4 HOH B 32 182 59 HOH HOH . 
F 4 HOH B 33 183 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 3 6.424 21.639 32.431 1 12.01 ? CHA HEM 150 B 1 
HETATM 2 C CHB HEM . . . D 3 2.021 23.229 33.56 1 11.72 ? CHB HEM 150 B 1 
HETATM 3 C CHC HEM . . . D 3 2.246 26.434 29.985 1 5.99 ? CHC HEM 150 B 1 
HETATM 4 C CHD HEM . . . D 3 6.419 24.363 28.513 1 3.64 ? CHD HEM 150 B 1 
HETATM 5 C C1A HEM . . . D 3 5.209 21.811 33.053 1 17.95 ? C1A HEM 150 B 1 
HETATM 6 C C2A HEM . . . D 3 4.761 21.062 34.189 1 20.99 ? C2A HEM 150 B 1 
HETATM 7 C C3A HEM . . . D 3 3.478 21.431 34.458 1 19.41 ? C3A HEM 150 B 1 
HETATM 8 C C4A HEM . . . D 3 3.168 22.464 33.509 1 14.32 ? C4A HEM 150 B 1 
HETATM 9 C CMA HEM . . . D 3 2.542 20.887 35.546 1 18.92 ? CMA HEM 150 B 1 
HETATM 10 C CAA HEM . . . D 3 5.63 20.138 35.017 1 29.78 ? CAA HEM 150 B 1 
HETATM 11 C CBA HEM . . . D 3 5.6 18.682 34.596 1 41.41 ? CBA HEM 150 B 1 
HETATM 12 C CGA HEM . . . D 3 6.439 17.806 35.508 1 48.14 ? CGA HEM 150 B 1 
HETATM 13 O O1A HEM . . . D 3 6.5 16.577 35.271 1 48.55 ? O1A HEM 150 B 1 
HETATM 14 O O2A HEM . . . D 3 7.037 18.354 36.464 1 52.22 ? O2A HEM 150 B 1 
HETATM 15 C C1B HEM . . . D 3 1.735 24.297 32.731 1 10.82 ? C1B HEM 150 B 1 
HETATM 16 C C2B HEM . . . D 3 0.556 25.137 32.884 1 9.64 ? C2B HEM 150 B 1 
HETATM 17 C C3B HEM . . . D 3 0.569 26.059 31.877 1 9.25 ? C3B HEM 150 B 1 
HETATM 18 C C4B HEM . . . D 3 1.813 25.776 31.106 1 5.31 ? C4B HEM 150 B 1 
HETATM 19 C CMB HEM . . . D 3 -0.514 25.016 33.971 1 7.56 ? CMB HEM 150 B 1 
HETATM 20 C CAB HEM . . . D 3 -0.535 26.881 31.634 1 11.43 ? CAB HEM 150 B 1 
HETATM 21 C CBB HEM . . . D 3 -0.537 28.351 31.275 1 16.53 ? CBB HEM 150 B 1 
HETATM 22 C C1C HEM . . . D 3 3.408 26.14 29.256 1 6 ? C1C HEM 150 B 1 
HETATM 23 C C2C HEM . . . D 3 3.715 26.695 27.938 1 5.68 ? C2C HEM 150 B 1 
HETATM 24 C C3C HEM . . . D 3 4.883 26.059 27.529 1 9.11 ? C3C HEM 150 B 1 
HETATM 25 C C4C HEM . . . D 3 5.264 25.167 28.565 1 7.84 ? C4C HEM 150 B 1 
HETATM 26 C CMC HEM . . . D 3 2.883 27.755 27.166 1 2.27 ? CMC HEM 150 B 1 
HETATM 27 C CAC HEM . . . D 3 5.592 26.156 26.339 1 8.49 ? CAC HEM 150 B 1 
HETATM 28 C CBC HEM . . . D 3 5.528 27.356 25.466 1 11.74 ? CBC HEM 150 B 1 
HETATM 29 C C1D HEM . . . D 3 6.83 23.465 29.475 1 3.65 ? C1D HEM 150 B 1 
HETATM 30 C C2D HEM . . . D 3 8.004 22.636 29.374 1 7.89 ? C2D HEM 150 B 1 
HETATM 31 C C3D HEM . . . D 3 8.008 21.876 30.476 1 11.62 ? C3D HEM 150 B 1 
HETATM 32 C C4D HEM . . . D 3 6.837 22.259 31.274 1 11.47 ? C4D HEM 150 B 1 
HETATM 33 C CMD HEM . . . D 3 9.047 22.584 28.267 1 2 ? CMD HEM 150 B 1 
HETATM 34 C CAD HEM . . . D 3 9.026 20.787 30.747 1 12.92 ? CAD HEM 150 B 1 
HETATM 35 C CBD HEM . . . D 3 8.66 19.534 29.985 1 24.64 ? CBD HEM 150 B 1 
HETATM 36 C CGD HEM . . . D 3 9.637 18.406 30.229 1 30.17 ? CGD HEM 150 B 1 
HETATM 37 O O1D HEM . . . D 3 9.72 17.924 31.375 1 26.26 ? O1D HEM 150 B 1 
HETATM 38 O O2D HEM . . . D 3 10.329 18.004 29.271 1 42.1 ? O2D HEM 150 B 1 
HETATM 39 N NA HEM . . . D 3 4.235 22.696 32.639 1 14.99 ? NA HEM 150 B 1 
HETATM 40 N NB HEM . . . D 3 2.535 24.714 31.657 1 6.94 ? NB HEM 150 B 1 
HETATM 41 N NC HEM . . . D 3 4.339 25.186 29.604 1 7.97 ? NC HEM 150 B 1 
HETATM 42 N ND HEM . . . D 3 6.106 23.221 30.634 1 7.06 ? ND HEM 150 B 1 
HETATM 43 FE FE HEM . . . D 3 4.358 24.015 31.152 1 9.68 ? FE HEM 150 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#