data_1C47 # _model_server_result.job_id bUraiMiQNbvAVNRIkG83nQ _model_server_result.datetime_utc '2025-04-03 15:11:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":563}' # _entry.id 1C47 # _exptl.entry_id 1C47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.108 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1C47 _cell.length_a 174.42 _cell.length_b 174.42 _cell.length_c 101.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 116 A SER 116 1_555 D CD CD . A CD 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A OD1 ASP 287 A ASP 287 1_555 D CD CD . A CD 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A OD2 ASP 289 A ASP 289 1_555 D CD CD . A CD 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc4 A OD1 ASP 291 A ASP 291 1_555 D CD CD . A CD 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc5 D CD CD . A CD 562 1_555 C O2P G16 . A G16 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc6 B OG SER 116 B SER 116 1_555 E CD CD . B CD 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc7 B OD2 ASP 287 B ASP 287 1_555 E CD CD . B CD 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc8 B OD2 ASP 289 B ASP 289 1_555 E CD CD . B CD 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc9 B OD2 ASP 291 B ASP 291 1_555 E CD CD . B CD 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? # _chem_comp.formula 'C6 H13 O12 P2 -1' _chem_comp.formula_weight 339.108 _chem_comp.id G16 _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-alpha-D-glucopyranose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE;1,6-di-O-phosphono-alpha-D-glucose;1,6-di-O-phosphono-D-glucose;1,6-di-O-phosphono-glucose' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G16 sing 83 n n C1 O1 G16 sing 84 n n C1 O5 G16 sing 85 n n C1 H1 G16 sing 86 n n C2 C3 G16 sing 87 n n C2 O2 G16 sing 88 n n C2 H2 G16 sing 89 n n C3 C4 G16 sing 90 n n C3 O3 G16 sing 91 n n C3 H3 G16 sing 92 n n C4 C5 G16 sing 93 n n C4 O4 G16 sing 94 n n C4 H4 G16 sing 95 n n C5 C6 G16 sing 96 n n C5 O5 G16 sing 97 n n C5 H5 G16 sing 98 n n C6 O6 G16 sing 99 n n C6 H61 G16 sing 100 n n C6 H62 G16 sing 101 n n O1 P' G16 sing 102 n n O2 HO2 G16 sing 103 n n O3 HO3 G16 sing 104 n n O4 HO4 G16 sing 105 n n O6 P G16 sing 106 n n P O1P G16 doub 107 n n P O2P G16 sing 108 n n P O3P G16 sing 109 n n O2P HOP2 G16 sing 110 n n O3P HOP3 G16 sing 111 n n P' O1X G16 sing 112 n n P' O2X G16 doub 113 n n P' O3X G16 sing 114 n n O1X HO1' G16 sing 115 n n # _pdbx_chem_comp_identifier.comp_id G16 _pdbx_chem_comp_identifier.identifier a-D-Glcp1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1C47 _atom_sites.fract_transf_matrix[1][1] 0.005733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G16 A 1 563 563 G16 G16 . D 3 CD A 1 562 562 CD CD . E 3 CD B 1 562 562 CD CD . F 4 HOH A 1 564 1 HOH HOH . F 4 HOH A 2 565 3 HOH HOH . F 4 HOH A 3 566 12 HOH HOH . F 4 HOH A 4 567 13 HOH HOH . F 4 HOH A 5 568 14 HOH HOH . F 4 HOH A 6 569 15 HOH HOH . F 4 HOH A 7 570 16 HOH HOH . F 4 HOH A 8 571 18 HOH HOH . F 4 HOH A 9 572 19 HOH HOH . F 4 HOH A 10 573 22 HOH HOH . F 4 HOH A 11 574 32 HOH HOH . F 4 HOH A 12 575 34 HOH HOH . F 4 HOH A 13 576 37 HOH HOH . F 4 HOH A 14 577 39 HOH HOH . F 4 HOH A 15 578 41 HOH HOH . F 4 HOH A 16 579 43 HOH HOH . F 4 HOH A 17 580 44 HOH HOH . F 4 HOH A 18 581 45 HOH HOH . F 4 HOH A 19 582 46 HOH HOH . F 4 HOH A 20 583 47 HOH HOH . F 4 HOH A 21 584 48 HOH HOH . F 4 HOH A 22 585 49 HOH HOH . F 4 HOH A 23 586 50 HOH HOH . F 4 HOH A 24 587 51 HOH HOH . F 4 HOH A 25 588 52 HOH HOH . F 4 HOH A 26 589 53 HOH HOH . F 4 HOH A 27 590 54 HOH HOH . F 4 HOH A 28 591 55 HOH HOH . F 4 HOH A 29 592 56 HOH HOH . F 4 HOH A 30 593 57 HOH HOH . F 4 HOH A 31 594 58 HOH HOH . F 4 HOH A 32 595 59 HOH HOH . F 4 HOH A 33 596 60 HOH HOH . F 4 HOH A 34 597 61 HOH HOH . F 4 HOH A 35 598 64 HOH HOH . F 4 HOH A 36 599 65 HOH HOH . F 4 HOH A 37 600 66 HOH HOH . F 4 HOH A 38 601 67 HOH HOH . F 4 HOH A 39 602 68 HOH HOH . F 4 HOH A 40 603 69 HOH HOH . F 4 HOH A 41 604 70 HOH HOH . F 4 HOH A 42 605 71 HOH HOH . F 4 HOH A 43 606 72 HOH HOH . F 4 HOH A 44 607 73 HOH HOH . F 4 HOH A 45 608 74 HOH HOH . F 4 HOH A 46 609 75 HOH HOH . F 4 HOH A 47 610 77 HOH HOH . F 4 HOH A 48 611 136 HOH HOH . F 4 HOH A 49 612 140 HOH HOH . F 4 HOH A 50 613 144 HOH HOH . F 4 HOH A 51 614 145 HOH HOH . F 4 HOH A 52 615 147 HOH HOH . F 4 HOH A 53 616 148 HOH HOH . F 4 HOH A 54 617 149 HOH HOH . F 4 HOH A 55 618 150 HOH HOH . F 4 HOH A 56 619 151 HOH HOH . F 4 HOH A 57 620 152 HOH HOH . F 4 HOH A 58 621 153 HOH HOH . F 4 HOH A 59 622 154 HOH HOH . G 4 HOH B 1 563 2 HOH HOH . G 4 HOH B 2 564 5 HOH HOH . G 4 HOH B 3 565 6 HOH HOH . G 4 HOH B 4 566 7 HOH HOH . G 4 HOH B 5 567 8 HOH HOH . G 4 HOH B 6 568 9 HOH HOH . G 4 HOH B 7 569 10 HOH HOH . G 4 HOH B 8 570 11 HOH HOH . G 4 HOH B 9 571 17 HOH HOH . G 4 HOH B 10 572 20 HOH HOH . G 4 HOH B 11 573 21 HOH HOH . G 4 HOH B 12 574 23 HOH HOH . G 4 HOH B 13 575 24 HOH HOH . G 4 HOH B 14 576 25 HOH HOH . G 4 HOH B 15 577 27 HOH HOH . G 4 HOH B 16 578 28 HOH HOH . G 4 HOH B 17 579 29 HOH HOH . G 4 HOH B 18 580 30 HOH HOH . G 4 HOH B 19 581 31 HOH HOH . G 4 HOH B 20 582 33 HOH HOH . G 4 HOH B 21 583 38 HOH HOH . G 4 HOH B 22 584 40 HOH HOH . G 4 HOH B 23 585 42 HOH HOH . G 4 HOH B 24 586 62 HOH HOH . G 4 HOH B 25 587 63 HOH HOH . G 4 HOH B 26 588 76 HOH HOH . G 4 HOH B 27 589 78 HOH HOH . G 4 HOH B 28 590 79 HOH HOH . G 4 HOH B 29 591 80 HOH HOH . G 4 HOH B 30 592 81 HOH HOH . G 4 HOH B 31 593 82 HOH HOH . G 4 HOH B 32 594 83 HOH HOH . G 4 HOH B 33 595 84 HOH HOH . G 4 HOH B 34 596 85 HOH HOH . G 4 HOH B 35 597 86 HOH HOH . G 4 HOH B 36 598 87 HOH HOH . G 4 HOH B 37 599 88 HOH HOH . G 4 HOH B 38 600 89 HOH HOH . G 4 HOH B 39 601 90 HOH HOH . G 4 HOH B 40 602 91 HOH HOH . G 4 HOH B 41 603 92 HOH HOH . G 4 HOH B 42 604 93 HOH HOH . G 4 HOH B 43 605 94 HOH HOH . G 4 HOH B 44 606 95 HOH HOH . G 4 HOH B 45 607 96 HOH HOH . G 4 HOH B 46 608 97 HOH HOH . G 4 HOH B 47 609 98 HOH HOH . G 4 HOH B 48 610 99 HOH HOH . G 4 HOH B 49 611 100 HOH HOH . G 4 HOH B 50 612 101 HOH HOH . G 4 HOH B 51 613 102 HOH HOH . G 4 HOH B 52 614 103 HOH HOH . G 4 HOH B 53 615 104 HOH HOH . G 4 HOH B 54 616 105 HOH HOH . G 4 HOH B 55 617 106 HOH HOH . G 4 HOH B 56 618 107 HOH HOH . G 4 HOH B 57 619 108 HOH HOH . G 4 HOH B 58 620 109 HOH HOH . G 4 HOH B 59 621 110 HOH HOH . G 4 HOH B 60 622 111 HOH HOH . G 4 HOH B 61 623 112 HOH HOH . G 4 HOH B 62 624 113 HOH HOH . G 4 HOH B 63 625 114 HOH HOH . G 4 HOH B 64 626 115 HOH HOH . G 4 HOH B 65 627 116 HOH HOH . G 4 HOH B 66 628 117 HOH HOH . G 4 HOH B 67 629 118 HOH HOH . G 4 HOH B 68 630 119 HOH HOH . G 4 HOH B 69 631 120 HOH HOH . G 4 HOH B 70 632 121 HOH HOH . G 4 HOH B 71 633 122 HOH HOH . G 4 HOH B 72 634 123 HOH HOH . G 4 HOH B 73 635 124 HOH HOH . G 4 HOH B 74 636 125 HOH HOH . G 4 HOH B 75 637 126 HOH HOH . G 4 HOH B 76 638 127 HOH HOH . G 4 HOH B 77 639 128 HOH HOH . G 4 HOH B 78 640 129 HOH HOH . G 4 HOH B 79 641 130 HOH HOH . G 4 HOH B 80 642 131 HOH HOH . G 4 HOH B 81 643 132 HOH HOH . G 4 HOH B 82 644 133 HOH HOH . G 4 HOH B 83 645 134 HOH HOH . G 4 HOH B 84 646 135 HOH HOH . G 4 HOH B 85 647 137 HOH HOH . G 4 HOH B 86 648 138 HOH HOH . G 4 HOH B 87 649 139 HOH HOH . G 4 HOH B 88 650 141 HOH HOH . G 4 HOH B 89 651 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G16 . . . C 2 39.366 69.121 75.354 1 25.2 ? C1 G16 563 A 1 HETATM 2 C C2 G16 . . . C 2 39.786 70.518 74.85 1 26.22 ? C2 G16 563 A 1 HETATM 3 C C3 G16 . . . C 2 38.668 71.116 73.982 1 23.95 ? C3 G16 563 A 1 HETATM 4 C C4 G16 . . . C 2 38.148 70.153 72.891 1 26.9 ? C4 G16 563 A 1 HETATM 5 C C5 G16 . . . C 2 37.783 68.725 73.439 1 32.63 ? C5 G16 563 A 1 HETATM 6 C C6 G16 . . . C 2 37.476 67.78 72.225 1 23.82 ? C6 G16 563 A 1 HETATM 7 O O1 G16 . . . C 2 38.331 69.409 76.266 1 33.39 ? O1 G16 563 A 1 HETATM 8 O O2 G16 . . . C 2 40.013 71.433 75.958 1 26.49 ? O2 G16 563 A 1 HETATM 9 O O3 G16 . . . C 2 39.328 72.204 73.305 1 25.96 ? O3 G16 563 A 1 HETATM 10 O O4 G16 . . . C 2 37.153 70.723 72.203 1 28.1 ? O4 G16 563 A 1 HETATM 11 O O5 G16 . . . C 2 38.931 68.29 74.244 1 25.63 ? O5 G16 563 A 1 HETATM 12 O O6 G16 . . . C 2 38.315 68.045 71.227 1 28.51 ? O6 G16 563 A 1 HETATM 13 P P G16 . . . C 2 37.882 67.858 69.751 1 29.51 ? P G16 563 A 1 HETATM 14 O O1P G16 . . . C 2 37.138 66.522 69.604 1 23.44 ? O1P G16 563 A 1 HETATM 15 O O2P G16 . . . C 2 39.133 67.838 68.856 1 19.29 ? O2P G16 563 A 1 HETATM 16 O O3P G16 . . . C 2 36.985 69.013 69.324 1 30.83 ? O3P G16 563 A 1 HETATM 17 P P' G16 . . . C 2 38.164 68.632 77.522 1 29.97 ? P' G16 563 A 1 HETATM 18 O O1X G16 . . . C 2 39.463 67.962 77.924 1 32.15 ? O1X G16 563 A 1 HETATM 19 O O2X G16 . . . C 2 37.673 69.527 78.63 1 26.7 ? O2X G16 563 A 1 HETATM 20 O O3X G16 . . . C 2 37.125 67.541 77.303 1 29.46 ? O3X G16 563 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #