data_1C4S # _model_server_result.job_id y5PmR-aE6_fN71yKZYwTwQ _model_server_result.datetime_utc '2024-11-09 02:28:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":45}' # _entry.id 1C4S # _exptl.entry_id 1C4S _exptl.method 'FIBER DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1C4S _cell.length_a 14.52 _cell.length_b 14.52 _cell.length_c 28.32 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details ? _pdbx_struct_assembly.oligomeric_count ? _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _pdbx_entity_branch.entity_id 1 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 1 1 2 GC4 ASG C4 H4 . O1 HO1 . sing 2 ? 1 3 2 GCU ASG C1 O1 . O3 HO3 . sing 3 ? 1 4 3 ASG GCU C1 O1 . O4 HO4 . sing 4 ? 1 5 4 GC4 ASG C1 O1 . O3 HO3 . sing 5 ? 1 5 6 GC4 ASG C4 H4 . O1 HO1 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 1 n A GC4 1 A 1 GC4 A 1 GC4 1 n A ASG 2 A 2 ASG A 2 ASG 1 n A GCU 3 A 3 GCU A 3 GCU 1 n A ASG 4 A 4 ASG A 4 ASG 1 n A GC4 5 A 5 GC4 A 5 GC4 1 n A ASG 6 A 6 ASG A 6 ASG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C4 GC4 . A GC4 1 1_555 A O1 ASG . A ASG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale2 A O3 ASG . A ASG 2 1_555 A C1 GCU . A GCU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 sing covale ? covale3 A O4 GCU . A GCU 3 1_555 A C1 ASG . A ASG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 sing covale ? covale4 A O3 ASG . A ASG 4 1_555 A C1 GC4 . A GC4 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 sing covale ? covale5 A C4 GC4 . A GC4 5 1_555 A O1 ASG . A ASG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1C4S _atom_sites.fract_transf_matrix[1][1] 0.068871 _atom_sites.fract_transf_matrix[1][2] 0.039762 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.079525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 40 40 NA NA . C 2 NA A 1 41 41 NA NA . D 2 NA A 1 42 42 NA NA . E 2 NA A 1 43 43 NA NA . F 2 NA A 1 44 44 NA NA . G 2 NA A 1 45 45 NA NA . H 3 HOH A 1 7 7 HOH HOH . H 3 HOH A 2 8 8 HOH HOH . H 3 HOH A 3 9 9 HOH HOH . H 3 HOH A 4 10 10 HOH HOH . H 3 HOH A 5 11 11 HOH HOH . H 3 HOH A 6 12 12 HOH HOH . H 3 HOH A 7 13 13 HOH HOH . H 3 HOH A 8 14 14 HOH HOH . H 3 HOH A 9 15 15 HOH HOH . H 3 HOH A 10 16 16 HOH HOH . H 3 HOH A 11 17 17 HOH HOH . H 3 HOH A 12 18 18 HOH HOH . H 3 HOH A 13 19 19 HOH HOH . H 3 HOH A 14 20 20 HOH HOH . H 3 HOH A 15 21 21 HOH HOH . H 3 HOH A 16 22 22 HOH HOH . H 3 HOH A 17 23 23 HOH HOH . H 3 HOH A 18 24 24 HOH HOH . H 3 HOH A 19 25 25 HOH HOH . H 3 HOH A 20 26 26 HOH HOH . H 3 HOH A 21 27 27 HOH HOH . H 3 HOH A 22 28 28 HOH HOH . H 3 HOH A 23 29 29 HOH HOH . H 3 HOH A 24 30 30 HOH HOH . H 3 HOH A 25 31 31 HOH HOH . H 3 HOH A 26 32 32 HOH HOH . H 3 HOH A 27 33 33 HOH HOH . H 3 HOH A 28 34 34 HOH HOH . H 3 HOH A 29 35 35 HOH HOH . H 3 HOH A 30 36 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id 45 _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.851 _atom_site.Cartn_y 9.286 _atom_site.Cartn_z 15.637 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 0 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 45 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #