data_1C4V # _model_server_result.job_id Fy-A52sQ2ctMa28jpPbYaQ _model_server_result.datetime_utc '2024-10-24 04:26:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":370}' # _entry.id 1C4V # _exptl.entry_id 1C4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 528.645 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(2,2-DIPHENYL-ETHYL)-7-METHYL-1,3-DIOXO-2,3,5,8-TETRAHYDRO-1H-[1,2,4]TRIAZOLO [1,2-A]PYRIDAZINE-5-CARBOXYLIC ACID(4-CARBAMIMIDOYL-CYCLOHEXYLMETHYL)-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.8 _cell.angle_gamma 90 _cell.entry_id 1C4V _cell.length_a 71.51 _cell.length_b 72.02 _cell.length_c 72.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 1 CYS 1 1_555 B SG CYS 119 2 CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 28 2 CYS 42 1_555 B SG CYS 44 2 CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf3 B SG CYS 173 2 CYS 168 1_555 B SG CYS 187 2 CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf4 B SG CYS 201 2 CYS 191 1_555 B SG CYS 231 2 CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 C C GLU 13 3 GLU 566 1_555 C N TYS 14 3 TYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 C C TYS 14 3 TYS 567 1_555 C N LEU 15 3 LEU 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C30 H36 N6 O3' _chem_comp.formula_weight 528.645 _chem_comp.id IH2 _chem_comp.mon_nstd_flag . _chem_comp.name '2-(2,2-DIPHENYL-ETHYL)-7-METHYL-1,3-DIOXO-2,3,5,8-TETRAHYDRO-1H-[1,2,4]TRIAZOLO [1,2-A]PYRIDAZINE-5-CARBOXYLIC ACID(4-CARBAMIMIDOYL-CYCLOHEXYLMETHYL)-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C1 IH2 sing 152 n n N9 C12 IH2 sing 153 n n N9 HN9 IH2 sing 154 n n C1 C2 IH2 sing 155 n n C1 H11 IH2 sing 156 n n C1 H12 IH2 sing 157 n n N10 C8 IH2 sing 158 n n N10 H101 IH2 sing 159 n n N10 H102 IH2 sing 160 n n N11 C8 IH2 doub 161 e n N11 HN11 IH2 sing 162 n n C8 C5 IH2 sing 163 n n C2 C7 IH2 sing 164 n n C2 C3 IH2 sing 165 n n C2 H2 IH2 sing 166 n n C7 C6 IH2 sing 167 n n C7 H71 IH2 sing 168 n n C7 H72 IH2 sing 169 n n C6 C5 IH2 sing 170 n n C6 H61 IH2 sing 171 n n C6 H62 IH2 sing 172 n n C5 C4 IH2 sing 173 n n C5 H5 IH2 sing 174 n n C4 C3 IH2 sing 175 n n C4 H41 IH2 sing 176 n n C4 H42 IH2 sing 177 n n C3 H31 IH2 sing 178 n n C3 H32A IH2 sing 179 n n C17 N18 IH2 sing 180 n n C17 C15 IH2 sing 181 n n C17 H171 IH2 sing 182 n n C17 H172 IH2 sing 183 n n N18 C20 IH2 sing 184 n y N18 N19 IH2 sing 185 n y C20 O20 IH2 doub 186 n n C20 N21 IH2 sing 187 n y N21 C22 IH2 sing 188 n y N21 C23 IH2 sing 189 n n C22 O22 IH2 doub 190 n n C22 N19 IH2 sing 191 n y N19 C13 IH2 sing 192 n n C13 C14 IH2 sing 193 n n C13 C12 IH2 sing 194 n n C13 H13 IH2 sing 195 n n C14 C15 IH2 doub 196 n n C14 H14 IH2 sing 197 n n C15 C16 IH2 sing 198 n n C12 O12 IH2 doub 199 n n C16 H161 IH2 sing 200 n n C16 H162 IH2 sing 201 n n C16 H163 IH2 sing 202 n n C23 C24 IH2 sing 203 n n C23 H231 IH2 sing 204 n n C23 H232 IH2 sing 205 n n C24 C25 IH2 sing 206 n n C24 C31 IH2 sing 207 n n C24 H24 IH2 sing 208 n n C28 C29 IH2 doub 209 n y C28 C27 IH2 sing 210 n y C28 H28 IH2 sing 211 n n C29 C30 IH2 sing 212 n y C29 H29 IH2 sing 213 n n C30 C25 IH2 doub 214 n y C30 H30 IH2 sing 215 n n C25 C26 IH2 sing 216 n y C26 C27 IH2 doub 217 n y C26 H26 IH2 sing 218 n n C27 H27 IH2 sing 219 n n C34 C35 IH2 doub 220 n y C34 C33 IH2 sing 221 n y C34 H34 IH2 sing 222 n n C35 C36 IH2 sing 223 n y C35 H35 IH2 sing 224 n n C36 C31 IH2 doub 225 n y C36 H36 IH2 sing 226 n n C31 C32 IH2 sing 227 n y C32 C33 IH2 doub 228 n y C32 H32 IH2 sing 229 n n C33 H33 IH2 sing 230 n n # _atom_sites.entry_id 1C4V _atom_sites.fract_transf_matrix[1][1] 0.013984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002668 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA 2 1 504 504 NA NA . E 5 IH2 2 1 370 370 IH2 IH2 . F 6 HOH 1 1 413 413 HOH HOH . F 6 HOH 1 2 415 415 HOH HOH . F 6 HOH 1 3 416 416 HOH HOH . F 6 HOH 1 4 423 423 HOH HOH . F 6 HOH 1 5 424 424 HOH HOH . F 6 HOH 1 6 454 454 HOH HOH . F 6 HOH 1 7 457 457 HOH HOH . F 6 HOH 1 8 458 458 HOH HOH . F 6 HOH 1 9 466 466 HOH HOH . F 6 HOH 1 10 481 481 HOH HOH . F 6 HOH 1 11 510 510 HOH HOH . F 6 HOH 1 12 519 519 HOH HOH . F 6 HOH 1 13 525 525 HOH HOH . G 6 HOH 2 1 400 400 HOH HOH . G 6 HOH 2 2 401 401 HOH HOH . G 6 HOH 2 3 402 402 HOH HOH . G 6 HOH 2 4 403 403 HOH HOH . G 6 HOH 2 5 404 404 HOH HOH . G 6 HOH 2 6 405 405 HOH HOH . G 6 HOH 2 7 406 406 HOH HOH . G 6 HOH 2 8 407 407 HOH HOH . G 6 HOH 2 9 408 408 HOH HOH . G 6 HOH 2 10 409 409 HOH HOH . G 6 HOH 2 11 410 410 HOH HOH . G 6 HOH 2 12 414 414 HOH HOH . G 6 HOH 2 13 417 417 HOH HOH . G 6 HOH 2 14 418 418 HOH HOH . G 6 HOH 2 15 419 419 HOH HOH . G 6 HOH 2 16 420 420 HOH HOH . G 6 HOH 2 17 421 421 HOH HOH . G 6 HOH 2 18 422 422 HOH HOH . G 6 HOH 2 19 425 425 HOH HOH . G 6 HOH 2 20 426 426 HOH HOH . G 6 HOH 2 21 428 428 HOH HOH . G 6 HOH 2 22 431 431 HOH HOH . G 6 HOH 2 23 432 432 HOH HOH . G 6 HOH 2 24 433 433 HOH HOH . G 6 HOH 2 25 434 434 HOH HOH . G 6 HOH 2 26 435 435 HOH HOH . G 6 HOH 2 27 436 436 HOH HOH . G 6 HOH 2 28 437 437 HOH HOH . G 6 HOH 2 29 439 439 HOH HOH . G 6 HOH 2 30 450 450 HOH HOH . G 6 HOH 2 31 451 451 HOH HOH . G 6 HOH 2 32 452 452 HOH HOH . G 6 HOH 2 33 453 453 HOH HOH . G 6 HOH 2 34 456 456 HOH HOH . G 6 HOH 2 35 459 459 HOH HOH . G 6 HOH 2 36 460 460 HOH HOH . G 6 HOH 2 37 461 461 HOH HOH . G 6 HOH 2 38 462 462 HOH HOH . G 6 HOH 2 39 463 463 HOH HOH . G 6 HOH 2 40 464 464 HOH HOH . G 6 HOH 2 41 465 465 HOH HOH . G 6 HOH 2 42 467 467 HOH HOH . G 6 HOH 2 43 468 468 HOH HOH . G 6 HOH 2 44 469 469 HOH HOH . G 6 HOH 2 45 470 470 HOH HOH . G 6 HOH 2 46 471 471 HOH HOH . G 6 HOH 2 47 472 472 HOH HOH . G 6 HOH 2 48 473 473 HOH HOH . G 6 HOH 2 49 474 474 HOH HOH . G 6 HOH 2 50 475 475 HOH HOH . G 6 HOH 2 51 476 476 HOH HOH . G 6 HOH 2 52 477 477 HOH HOH . G 6 HOH 2 53 478 478 HOH HOH . G 6 HOH 2 54 479 479 HOH HOH . G 6 HOH 2 55 480 480 HOH HOH . G 6 HOH 2 56 482 482 HOH HOH . G 6 HOH 2 57 483 483 HOH HOH . G 6 HOH 2 58 484 484 HOH HOH . G 6 HOH 2 59 485 485 HOH HOH . G 6 HOH 2 60 486 486 HOH HOH . G 6 HOH 2 61 487 487 HOH HOH . G 6 HOH 2 62 500 500 HOH HOH . G 6 HOH 2 63 501 501 HOH HOH . G 6 HOH 2 64 503 503 HOH HOH . G 6 HOH 2 65 505 505 HOH HOH . G 6 HOH 2 66 506 506 HOH HOH . G 6 HOH 2 67 507 507 HOH HOH . G 6 HOH 2 68 509 509 HOH HOH . G 6 HOH 2 69 511 511 HOH HOH . G 6 HOH 2 70 512 512 HOH HOH . G 6 HOH 2 71 513 513 HOH HOH . G 6 HOH 2 72 514 514 HOH HOH . G 6 HOH 2 73 515 515 HOH HOH . G 6 HOH 2 74 516 516 HOH HOH . G 6 HOH 2 75 517 517 HOH HOH . G 6 HOH 2 76 518 518 HOH HOH . G 6 HOH 2 77 521 521 HOH HOH . G 6 HOH 2 78 522 522 HOH HOH . G 6 HOH 2 79 523 523 HOH HOH . G 6 HOH 2 80 524 524 HOH HOH . H 6 HOH 3 1 412 412 HOH HOH . H 6 HOH 3 2 430 430 HOH HOH . H 6 HOH 3 3 455 455 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 IH2 . . . E 5 15.625 -11.694 20.206 1 20.83 ? N9 IH2 370 2 1 HETATM 2 C C1 IH2 . . . E 5 14.186 -11.531 19.518 1 19.13 ? C1 IH2 370 2 1 HETATM 3 N N10 IH2 . . . E 5 10.218 -12.983 24.176 1 16.64 ? N10 IH2 370 2 1 HETATM 4 N N11 IH2 . . . E 5 10.602 -10.73 24.419 1 17.24 ? N11 IH2 370 2 1 HETATM 5 C C8 IH2 . . . E 5 10.899 -11.917 23.841 1 17.48 ? C8 IH2 370 2 1 HETATM 6 C C2 IH2 . . . E 5 13.185 -11.674 20.464 1 18.72 ? C2 IH2 370 2 1 HETATM 7 C C7 IH2 . . . E 5 13.712 -12.726 21.49 1 18.24 ? C7 IH2 370 2 1 HETATM 8 C C6 IH2 . . . E 5 12.546 -13.047 22.285 1 18.3 ? C6 IH2 370 2 1 HETATM 9 C C5 IH2 . . . E 5 11.854 -11.817 22.847 1 17.27 ? C5 IH2 370 2 1 HETATM 10 C C4 IH2 . . . E 5 12.172 -10.515 22.27 1 17.68 ? C4 IH2 370 2 1 HETATM 11 C C3 IH2 . . . E 5 12.9 -10.296 21.09 1 17.85 ? C3 IH2 370 2 1 HETATM 12 C C17 IH2 . . . E 5 19.773 -14.691 20.114 1 23.23 ? C17 IH2 370 2 1 HETATM 13 N N18 IH2 . . . E 5 19.005 -14.879 21.224 1 22.69 ? N18 IH2 370 2 1 HETATM 14 C C20 IH2 . . . E 5 18.748 -16.082 21.782 1 24.33 ? C20 IH2 370 2 1 HETATM 15 O O20 IH2 . . . E 5 19.186 -17.212 21.633 1 24.79 ? O20 IH2 370 2 1 HETATM 16 N N21 IH2 . . . E 5 17.836 -15.846 22.68 1 24.68 ? N21 IH2 370 2 1 HETATM 17 C C22 IH2 . . . E 5 17.499 -14.517 22.633 1 22.95 ? C22 IH2 370 2 1 HETATM 18 O O22 IH2 . . . E 5 16.708 -14.056 23.309 1 22.81 ? O22 IH2 370 2 1 HETATM 19 N N19 IH2 . . . E 5 18.25 -13.937 21.767 1 21.89 ? N19 IH2 370 2 1 HETATM 20 C C13 IH2 . . . E 5 17.825 -12.806 20.91 1 22.54 ? C13 IH2 370 2 1 HETATM 21 C C14 IH2 . . . E 5 18.836 -12.424 20.059 1 22.46 ? C14 IH2 370 2 1 HETATM 22 C C15 IH2 . . . E 5 19.562 -13.292 19.461 1 22.58 ? C15 IH2 370 2 1 HETATM 23 C C12 IH2 . . . E 5 16.34 -12.815 20.323 1 22.17 ? C12 IH2 370 2 1 HETATM 24 C C16 IH2 . . . E 5 20.554 -12.778 18.604 1 21.27 ? C16 IH2 370 2 1 HETATM 25 O O12 IH2 . . . E 5 15.734 -14.072 20.091 1 22.51 ? O12 IH2 370 2 1 HETATM 26 C C23 IH2 . . . E 5 17.395 -16.876 23.528 1 27.6 ? C23 IH2 370 2 1 HETATM 27 C C24 IH2 . . . E 5 18.083 -16.567 24.916 1 30.97 ? C24 IH2 370 2 1 HETATM 28 C C28 IH2 . . . E 5 22.198 -14.601 25.662 1 34.3 ? C28 IH2 370 2 1 HETATM 29 C C29 IH2 . . . E 5 21.155 -13.953 26.043 1 34.32 ? C29 IH2 370 2 1 HETATM 30 C C30 IH2 . . . E 5 19.811 -14.535 25.781 1 33.51 ? C30 IH2 370 2 1 HETATM 31 C C25 IH2 . . . E 5 19.472 -15.804 25.109 1 32.49 ? C25 IH2 370 2 1 HETATM 32 C C26 IH2 . . . E 5 20.537 -16.448 24.72 1 33.77 ? C26 IH2 370 2 1 HETATM 33 C C27 IH2 . . . E 5 21.885 -15.862 24.949 1 34.11 ? C27 IH2 370 2 1 HETATM 34 C C34 IH2 . . . E 5 17.703 -19.243 28.147 1 32.25 ? C34 IH2 370 2 1 HETATM 35 C C35 IH2 . . . E 5 18.56 -19.623 26.991 1 32.18 ? C35 IH2 370 2 1 HETATM 36 C C36 IH2 . . . E 5 18.577 -18.799 25.918 1 32.59 ? C36 IH2 370 2 1 HETATM 37 C C31 IH2 . . . E 5 17.795 -17.599 25.933 1 31.71 ? C31 IH2 370 2 1 HETATM 38 C C32 IH2 . . . E 5 16.911 -17.294 27.085 1 32.8 ? C32 IH2 370 2 1 HETATM 39 C C33 IH2 . . . E 5 16.887 -18.109 28.2 1 32.61 ? C33 IH2 370 2 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #