data_1C4V # _model_server_result.job_id z4a-iDTiN84WyTyFkS02jg _model_server_result.datetime_utc '2024-12-27 00:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":504}' # _entry.id 1C4V # _exptl.entry_id 1C4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.8 _cell.angle_gamma 90 _cell.entry_id 1C4V _cell.length_a 71.51 _cell.length_b 72.02 _cell.length_c 72.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 1 CYS 1 1_555 B SG CYS 119 2 CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 28 2 CYS 42 1_555 B SG CYS 44 2 CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf3 B SG CYS 173 2 CYS 168 1_555 B SG CYS 187 2 CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf4 B SG CYS 201 2 CYS 191 1_555 B SG CYS 231 2 CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 C C GLU 13 3 GLU 566 1_555 C N TYS 14 3 TYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 C C TYS 14 3 TYS 567 1_555 C N LEU 15 3 LEU 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1C4V _atom_sites.fract_transf_matrix[1][1] 0.013984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002668 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA 2 1 504 504 NA NA . E 5 IH2 2 1 370 370 IH2 IH2 . F 6 HOH 1 1 413 413 HOH HOH . F 6 HOH 1 2 415 415 HOH HOH . F 6 HOH 1 3 416 416 HOH HOH . F 6 HOH 1 4 423 423 HOH HOH . F 6 HOH 1 5 424 424 HOH HOH . F 6 HOH 1 6 454 454 HOH HOH . F 6 HOH 1 7 457 457 HOH HOH . F 6 HOH 1 8 458 458 HOH HOH . F 6 HOH 1 9 466 466 HOH HOH . F 6 HOH 1 10 481 481 HOH HOH . F 6 HOH 1 11 510 510 HOH HOH . F 6 HOH 1 12 519 519 HOH HOH . F 6 HOH 1 13 525 525 HOH HOH . G 6 HOH 2 1 400 400 HOH HOH . G 6 HOH 2 2 401 401 HOH HOH . G 6 HOH 2 3 402 402 HOH HOH . G 6 HOH 2 4 403 403 HOH HOH . G 6 HOH 2 5 404 404 HOH HOH . G 6 HOH 2 6 405 405 HOH HOH . G 6 HOH 2 7 406 406 HOH HOH . G 6 HOH 2 8 407 407 HOH HOH . G 6 HOH 2 9 408 408 HOH HOH . G 6 HOH 2 10 409 409 HOH HOH . G 6 HOH 2 11 410 410 HOH HOH . G 6 HOH 2 12 414 414 HOH HOH . G 6 HOH 2 13 417 417 HOH HOH . G 6 HOH 2 14 418 418 HOH HOH . G 6 HOH 2 15 419 419 HOH HOH . G 6 HOH 2 16 420 420 HOH HOH . G 6 HOH 2 17 421 421 HOH HOH . G 6 HOH 2 18 422 422 HOH HOH . G 6 HOH 2 19 425 425 HOH HOH . G 6 HOH 2 20 426 426 HOH HOH . G 6 HOH 2 21 428 428 HOH HOH . G 6 HOH 2 22 431 431 HOH HOH . G 6 HOH 2 23 432 432 HOH HOH . G 6 HOH 2 24 433 433 HOH HOH . G 6 HOH 2 25 434 434 HOH HOH . G 6 HOH 2 26 435 435 HOH HOH . G 6 HOH 2 27 436 436 HOH HOH . G 6 HOH 2 28 437 437 HOH HOH . G 6 HOH 2 29 439 439 HOH HOH . G 6 HOH 2 30 450 450 HOH HOH . G 6 HOH 2 31 451 451 HOH HOH . G 6 HOH 2 32 452 452 HOH HOH . G 6 HOH 2 33 453 453 HOH HOH . G 6 HOH 2 34 456 456 HOH HOH . G 6 HOH 2 35 459 459 HOH HOH . G 6 HOH 2 36 460 460 HOH HOH . G 6 HOH 2 37 461 461 HOH HOH . G 6 HOH 2 38 462 462 HOH HOH . G 6 HOH 2 39 463 463 HOH HOH . G 6 HOH 2 40 464 464 HOH HOH . G 6 HOH 2 41 465 465 HOH HOH . G 6 HOH 2 42 467 467 HOH HOH . G 6 HOH 2 43 468 468 HOH HOH . G 6 HOH 2 44 469 469 HOH HOH . G 6 HOH 2 45 470 470 HOH HOH . G 6 HOH 2 46 471 471 HOH HOH . G 6 HOH 2 47 472 472 HOH HOH . G 6 HOH 2 48 473 473 HOH HOH . G 6 HOH 2 49 474 474 HOH HOH . G 6 HOH 2 50 475 475 HOH HOH . G 6 HOH 2 51 476 476 HOH HOH . G 6 HOH 2 52 477 477 HOH HOH . G 6 HOH 2 53 478 478 HOH HOH . G 6 HOH 2 54 479 479 HOH HOH . G 6 HOH 2 55 480 480 HOH HOH . G 6 HOH 2 56 482 482 HOH HOH . G 6 HOH 2 57 483 483 HOH HOH . G 6 HOH 2 58 484 484 HOH HOH . G 6 HOH 2 59 485 485 HOH HOH . G 6 HOH 2 60 486 486 HOH HOH . G 6 HOH 2 61 487 487 HOH HOH . G 6 HOH 2 62 500 500 HOH HOH . G 6 HOH 2 63 501 501 HOH HOH . G 6 HOH 2 64 503 503 HOH HOH . G 6 HOH 2 65 505 505 HOH HOH . G 6 HOH 2 66 506 506 HOH HOH . G 6 HOH 2 67 507 507 HOH HOH . G 6 HOH 2 68 509 509 HOH HOH . G 6 HOH 2 69 511 511 HOH HOH . G 6 HOH 2 70 512 512 HOH HOH . G 6 HOH 2 71 513 513 HOH HOH . G 6 HOH 2 72 514 514 HOH HOH . G 6 HOH 2 73 515 515 HOH HOH . G 6 HOH 2 74 516 516 HOH HOH . G 6 HOH 2 75 517 517 HOH HOH . G 6 HOH 2 76 518 518 HOH HOH . G 6 HOH 2 77 521 521 HOH HOH . G 6 HOH 2 78 522 522 HOH HOH . G 6 HOH 2 79 523 523 HOH HOH . G 6 HOH 2 80 524 524 HOH HOH . H 6 HOH 3 1 412 412 HOH HOH . H 6 HOH 3 2 430 430 HOH HOH . H 6 HOH 3 3 455 455 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 3.714 _atom_site.Cartn_y -13.726 _atom_site.Cartn_z 30.015 _atom_site.occupancy 0.71 _atom_site.B_iso_or_equiv 15.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 504 _atom_site.auth_asym_id 2 _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #