data_1C51
#
_model_server_result.job_id            vVOlEfcMf9kizZZk6e0f5w 
_model_server_result.datetime_utc      '2024-12-26 17:57:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1c51 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"RA","auth_seq_id":623}' 
#
_entry.id    1C51 
#
_exptl.entry_id    1C51 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              450.696 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYLLOQUINONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1C51 
_cell.length_a            286 
_cell.length_b            286 
_cell.length_c            167 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1C51 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    24-meric 
_pdbx_struct_assembly.oligomeric_count      24 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 286 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 143 247.683265 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 L N N 
? 10 RA N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            CA 
_struct_conn.ptnr1_label_comp_id            UNK 
_struct_conn.ptnr1_label_seq_id             454 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             UNK 
_struct_conn.ptnr1_auth_seq_id              454 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            M 
_struct_conn.ptnr2_label_atom_id            FE2 
_struct_conn.ptnr2_label_comp_id            SF4 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             SF4 
_struct_conn.ptnr2_auth_seq_id              602 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.128 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C31 H46 O2' 
_chem_comp.formula_weight    450.696 
_chem_comp.id                PQN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYLLOQUINONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN K1;2-METHYL-3-PHYTYL-1,4-NAPHTHOQUINONE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PQN doub 146 n n 
C1 C2 PQN sing 147 n n 
C1 C10 PQN sing 148 n n 
C2 C2M PQN sing 149 n n 
C2 C3 PQN doub 150 n n 
C2M H2M1 PQN sing 151 n n 
C2M H2M2 PQN sing 152 n n 
C2M H2M3 PQN sing 153 n n 
C3 C4 PQN sing 154 n n 
C3 C11 PQN sing 155 n n 
C4 O4 PQN doub 156 n n 
C4 C5 PQN sing 157 n n 
C5 C6 PQN doub 158 n y 
C5 C10 PQN sing 159 n y 
C6 C7 PQN sing 160 n y 
C6 H6 PQN sing 161 n n 
C7 C8 PQN doub 162 n y 
C7 H7 PQN sing 163 n n 
C8 C9 PQN sing 164 n y 
C8 H8 PQN sing 165 n n 
C9 C10 PQN doub 166 n y 
C9 H9 PQN sing 167 n n 
C11 C12 PQN sing 168 n n 
C11 H111 PQN sing 169 n n 
C11 H112 PQN sing 170 n n 
C12 C13 PQN doub 171 e n 
C12 H12 PQN sing 172 n n 
C13 C14 PQN sing 173 n n 
C13 C15 PQN sing 174 n n 
C14 H141 PQN sing 175 n n 
C14 H142 PQN sing 176 n n 
C14 H143 PQN sing 177 n n 
C15 C16 PQN sing 178 n n 
C15 H151 PQN sing 179 n n 
C15 H152 PQN sing 180 n n 
C16 C17 PQN sing 181 n n 
C16 H161 PQN sing 182 n n 
C16 H162 PQN sing 183 n n 
C17 C18 PQN sing 184 n n 
C17 H171 PQN sing 185 n n 
C17 H172 PQN sing 186 n n 
C18 C19 PQN sing 187 n n 
C18 C20 PQN sing 188 n n 
C18 H18 PQN sing 189 n n 
C19 H191 PQN sing 190 n n 
C19 H192 PQN sing 191 n n 
C19 H193 PQN sing 192 n n 
C20 C21 PQN sing 193 n n 
C20 H201 PQN sing 194 n n 
C20 H202 PQN sing 195 n n 
C21 C22 PQN sing 196 n n 
C21 H211 PQN sing 197 n n 
C21 H212 PQN sing 198 n n 
C22 C23 PQN sing 199 n n 
C22 H221 PQN sing 200 n n 
C22 H222 PQN sing 201 n n 
C23 C24 PQN sing 202 n n 
C23 C25 PQN sing 203 n n 
C23 H23 PQN sing 204 n n 
C24 H241 PQN sing 205 n n 
C24 H242 PQN sing 206 n n 
C24 H243 PQN sing 207 n n 
C25 C26 PQN sing 208 n n 
C25 H251 PQN sing 209 n n 
C25 H252 PQN sing 210 n n 
C26 C27 PQN sing 211 n n 
C26 H261 PQN sing 212 n n 
C26 H262 PQN sing 213 n n 
C27 C28 PQN sing 214 n n 
C27 H271 PQN sing 215 n n 
C27 H272 PQN sing 216 n n 
C28 C29 PQN sing 217 n n 
C28 C30 PQN sing 218 n n 
C28 H28 PQN sing 219 n n 
C29 H291 PQN sing 220 n n 
C29 H292 PQN sing 221 n n 
C29 H293 PQN sing 222 n n 
C30 H301 PQN sing 223 n n 
C30 H302 PQN sing 224 n n 
C30 H303 PQN sing 225 n n 
#
_atom_sites.entry_id                     1C51 
_atom_sites.fract_transf_matrix[1][1]    0.003497 
_atom_sites.fract_transf_matrix[1][2]    0.002019 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004037 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 9 CLA A 1 598 2 CLA CLA . 
J 9 CLA A 1 599 5 CLA CLA . 
K 9 CLA A 1 600 6 CLA CLA . 
L 10 PQN A 1 601 7 PQN PQN . 
M 11 SF4 A 1 602 9 SF4 FS4 . 
N 9 CLA A 1 603 103 CLA CLA . 
O 9 CLA A 1 604 107 CLA CLA . 
P 9 CLA A 1 605 109 CLA CLA . 
Q 9 CLA A 1 606 110 CLA CLA . 
R 9 CLA A 1 607 114 CLA CLA . 
S 9 CLA A 1 608 118 CLA CLA . 
T 9 CLA A 1 609 120 CLA CLA . 
U 9 CLA A 1 610 121 CLA CLA . 
V 9 CLA A 1 611 122 CLA CLA . 
W 9 CLA A 1 612 124 CLA CLA . 
X 9 CLA A 1 613 131 CLA CLA . 
Y 9 CLA A 1 614 133 CLA CLA . 
Z 9 CLA A 1 615 134 CLA CLA . 
AA 9 CLA A 1 616 137 CLA CLA . 
BA 9 CLA A 1 617 140 CLA CLA . 
CA 9 CLA A 1 618 141 CLA CLA . 
DA 9 CLA A 1 619 144 CLA CLA . 
EA 9 CLA A 1 620 145 CLA CLA . 
FA 9 CLA A 1 621 148 CLA CLA . 
GA 9 CLA A 1 622 150 CLA CLA . 
HA 9 CLA A 1 623 153 CLA CLA . 
IA 9 CLA A 1 624 155 CLA CLA . 
JA 9 CLA A 1 625 156 CLA CLA . 
KA 9 CLA A 1 626 158 CLA CLA . 
LA 9 CLA A 1 627 162 CLA CLA . 
MA 9 CLA A 1 628 165 CLA CLA . 
NA 9 CLA A 1 629 166 CLA CLA . 
OA 9 CLA B 1 620 1 CLA CLA . 
PA 9 CLA B 1 621 3 CLA CLA . 
QA 9 CLA B 1 622 4 CLA CLA . 
RA 10 PQN B 1 623 8 PQN PQN . 
SA 9 CLA B 1 624 101 CLA CLA . 
TA 9 CLA B 1 625 102 CLA CLA . 
UA 9 CLA B 1 626 104 CLA CLA . 
VA 9 CLA B 1 627 105 CLA CLA . 
WA 9 CLA B 1 628 106 CLA CLA . 
XA 9 CLA B 1 629 108 CLA CLA . 
YA 9 CLA B 1 630 111 CLA CLA . 
ZA 9 CLA B 1 631 112 CLA CLA . 
AB 9 CLA B 1 632 113 CLA CLA . 
BB 9 CLA B 1 633 115 CLA CLA . 
CB 9 CLA B 1 634 116 CLA CLA . 
DB 9 CLA B 1 635 119 CLA CLA . 
EB 9 CLA B 1 636 123 CLA CLA . 
FB 9 CLA B 1 637 125 CLA CLA . 
GB 9 CLA B 1 638 126 CLA CLA . 
HB 9 CLA B 1 639 127 CLA CLA . 
IB 9 CLA B 1 640 129 CLA CLA . 
JB 9 CLA B 1 641 130 CLA CLA . 
KB 9 CLA B 1 642 132 CLA CLA . 
LB 9 CLA B 1 643 136 CLA CLA . 
MB 9 CLA B 1 644 139 CLA CLA . 
NB 9 CLA B 1 645 142 CLA CLA . 
OB 9 CLA B 1 646 146 CLA CLA . 
PB 9 CLA B 1 647 151 CLA CLA . 
QB 9 CLA B 1 648 152 CLA CLA . 
RB 9 CLA B 1 649 154 CLA CLA . 
SB 9 CLA B 1 650 159 CLA CLA . 
TB 9 CLA B 1 651 160 CLA CLA . 
UB 9 CLA B 1 652 161 CLA CLA . 
VB 9 CLA B 1 653 164 CLA CLA . 
WB 11 SF4 C 1 78 10 SF4 FS4 . 
XB 11 SF4 C 1 79 11 SF4 FS4 . 
YB 9 CLA F 1 154 117 CLA CLA . 
ZB 9 CLA F 1 155 128 CLA CLA . 
AC 9 CLA F 1 156 138 CLA CLA . 
BC 9 CLA F 1 157 143 CLA CLA . 
CC 9 CLA F 1 158 157 CLA CLA . 
DC 9 CLA K 1 135 135 CLA CLA . 
EC 9 CLA L 1 147 147 CLA CLA . 
FC 9 CLA L 1 149 149 CLA CLA . 
GC 9 CLA L 1 163 163 CLA CLA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PQN . . . RA 10 113.394 117.032 67.107 1 20 ? C1 PQN 623 B 1 
HETATM 2 C C7 PQN . . . RA 10 110.99 112.868 66.422 1 20 ? C7 PQN 623 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           2 
#