data_1C5E # _model_server_result.job_id -Oawwl_t2oI_HlVg5IHxqg _model_server_result.datetime_utc '2024-10-24 04:29:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":599}' # _entry.id 1C5E # _exptl.entry_id 1C5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.32 _cell.angle_gamma 90 _cell.entry_id 1C5E _cell.length_a 45.58 _cell.length_b 69.07 _cell.length_c 45.59 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 100 n n C1 C2 GOL sing 101 n n C1 H11 GOL sing 102 n n C1 H12 GOL sing 103 n n O1 HO1 GOL sing 104 n n C2 O2 GOL sing 105 n n C2 C3 GOL sing 106 n n C2 H2 GOL sing 107 n n O2 HO2 GOL sing 108 n n C3 O3 GOL sing 109 n n C3 H31 GOL sing 110 n n C3 H32 GOL sing 111 n n O3 HO3 GOL sing 112 n n # _atom_sites.entry_id 1C5E _atom_sites.fract_transf_matrix[1][1] 0.021939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0056 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 599 599 GOL GOL . E 2 GOL C 1 600 600 GOL GOL . F 3 HOH A 1 601 601 HOH HOH . F 3 HOH A 2 605 605 HOH HOH . F 3 HOH A 3 608 608 HOH HOH . F 3 HOH A 4 610 610 HOH HOH . F 3 HOH A 5 614 614 HOH HOH . F 3 HOH A 6 617 617 HOH HOH . F 3 HOH A 7 622 622 HOH HOH . F 3 HOH A 8 625 625 HOH HOH . F 3 HOH A 9 631 631 HOH HOH . F 3 HOH A 10 632 632 HOH HOH . F 3 HOH A 11 635 635 HOH HOH . F 3 HOH A 12 638 638 HOH HOH . F 3 HOH A 13 639 639 HOH HOH . F 3 HOH A 14 640 640 HOH HOH . F 3 HOH A 15 642 642 HOH HOH . F 3 HOH A 16 645 645 HOH HOH . F 3 HOH A 17 653 653 HOH HOH . F 3 HOH A 18 655 655 HOH HOH . F 3 HOH A 19 657 657 HOH HOH . F 3 HOH A 20 658 658 HOH HOH . F 3 HOH A 21 659 659 HOH HOH . F 3 HOH A 22 660 660 HOH HOH . F 3 HOH A 23 661 661 HOH HOH . F 3 HOH A 24 664 664 HOH HOH . F 3 HOH A 25 665 665 HOH HOH . F 3 HOH A 26 666 666 HOH HOH . F 3 HOH A 27 669 669 HOH HOH . F 3 HOH A 28 671 671 HOH HOH . F 3 HOH A 29 676 676 HOH HOH . F 3 HOH A 30 677 677 HOH HOH . F 3 HOH A 31 678 678 HOH HOH . F 3 HOH A 32 680 680 HOH HOH . F 3 HOH A 33 681 681 HOH HOH . F 3 HOH A 34 682 682 HOH HOH . F 3 HOH A 35 684 684 HOH HOH . F 3 HOH A 36 687 687 HOH HOH . F 3 HOH A 37 688 688 HOH HOH . F 3 HOH A 38 690 690 HOH HOH . F 3 HOH A 39 691 691 HOH HOH . F 3 HOH A 40 696 696 HOH HOH . F 3 HOH A 41 701 701 HOH HOH . F 3 HOH A 42 703 703 HOH HOH . F 3 HOH A 43 707 707 HOH HOH . F 3 HOH A 44 712 712 HOH HOH . F 3 HOH A 45 717 717 HOH HOH . F 3 HOH A 46 718 718 HOH HOH . F 3 HOH A 47 720 720 HOH HOH . F 3 HOH A 48 725 725 HOH HOH . F 3 HOH A 49 728 728 HOH HOH . F 3 HOH A 50 729 729 HOH HOH . F 3 HOH A 51 731 731 HOH HOH . F 3 HOH A 52 734 734 HOH HOH . F 3 HOH A 53 735 735 HOH HOH . F 3 HOH A 54 737 737 HOH HOH . F 3 HOH A 55 739 739 HOH HOH . F 3 HOH A 56 740 740 HOH HOH . F 3 HOH A 57 741 741 HOH HOH . F 3 HOH A 58 746 746 HOH HOH . F 3 HOH A 59 748 748 HOH HOH . F 3 HOH A 60 751 751 HOH HOH . F 3 HOH A 61 754 754 HOH HOH . F 3 HOH A 62 760 760 HOH HOH . F 3 HOH A 63 761 761 HOH HOH . F 3 HOH A 64 765 765 HOH HOH . F 3 HOH A 65 766 766 HOH HOH . F 3 HOH A 66 767 767 HOH HOH . F 3 HOH A 67 768 768 HOH HOH . F 3 HOH A 68 772 772 HOH HOH . F 3 HOH A 69 773 773 HOH HOH . F 3 HOH A 70 775 775 HOH HOH . F 3 HOH A 71 776 776 HOH HOH . F 3 HOH A 72 777 777 HOH HOH . F 3 HOH A 73 781 781 HOH HOH . F 3 HOH A 74 783 783 HOH HOH . F 3 HOH A 75 789 789 HOH HOH . F 3 HOH A 76 790 790 HOH HOH . F 3 HOH A 77 792 792 HOH HOH . F 3 HOH A 78 794 794 HOH HOH . F 3 HOH A 79 796 796 HOH HOH . F 3 HOH A 80 800 800 HOH HOH . F 3 HOH A 81 806 806 HOH HOH . F 3 HOH A 82 808 808 HOH HOH . F 3 HOH A 83 810 810 HOH HOH . F 3 HOH A 84 816 816 HOH HOH . F 3 HOH A 85 828 828 HOH HOH . F 3 HOH A 86 829 829 HOH HOH . F 3 HOH A 87 832 832 HOH HOH . F 3 HOH A 88 834 834 HOH HOH . F 3 HOH A 89 843 843 HOH HOH . F 3 HOH A 90 844 844 HOH HOH . F 3 HOH A 91 851 851 HOH HOH . F 3 HOH A 92 852 852 HOH HOH . F 3 HOH A 93 857 857 HOH HOH . F 3 HOH A 94 858 858 HOH HOH . F 3 HOH A 95 859 859 HOH HOH . F 3 HOH A 96 862 862 HOH HOH . F 3 HOH A 97 869 869 HOH HOH . F 3 HOH A 98 872 872 HOH HOH . F 3 HOH A 99 873 873 HOH HOH . F 3 HOH A 100 874 874 HOH HOH . F 3 HOH A 101 876 876 HOH HOH . F 3 HOH A 102 877 877 HOH HOH . F 3 HOH A 103 881 881 HOH HOH . F 3 HOH A 104 882 882 HOH HOH . F 3 HOH A 105 883 883 HOH HOH . F 3 HOH A 106 885 885 HOH HOH . F 3 HOH A 107 886 886 HOH HOH . F 3 HOH A 108 889 889 HOH HOH . F 3 HOH A 109 893 893 HOH HOH . F 3 HOH A 110 894 894 HOH HOH . F 3 HOH A 111 895 895 HOH HOH . F 3 HOH A 112 896 896 HOH HOH . F 3 HOH A 113 897 897 HOH HOH . F 3 HOH A 114 898 898 HOH HOH . F 3 HOH A 115 899 899 HOH HOH . F 3 HOH A 116 902 902 HOH HOH . F 3 HOH A 117 903 903 HOH HOH . F 3 HOH A 118 904 904 HOH HOH . F 3 HOH A 119 905 905 HOH HOH . F 3 HOH A 120 908 908 HOH HOH . G 3 HOH B 1 607 607 HOH HOH . G 3 HOH B 2 609 609 HOH HOH . G 3 HOH B 3 611 611 HOH HOH . G 3 HOH B 4 613 613 HOH HOH . G 3 HOH B 5 615 615 HOH HOH . G 3 HOH B 6 616 616 HOH HOH . G 3 HOH B 7 618 618 HOH HOH . G 3 HOH B 8 620 620 HOH HOH . G 3 HOH B 9 621 621 HOH HOH . G 3 HOH B 10 624 624 HOH HOH . G 3 HOH B 11 626 626 HOH HOH . G 3 HOH B 12 628 628 HOH HOH . G 3 HOH B 13 634 634 HOH HOH . G 3 HOH B 14 636 636 HOH HOH . G 3 HOH B 15 637 637 HOH HOH . G 3 HOH B 16 641 641 HOH HOH . G 3 HOH B 17 646 646 HOH HOH . G 3 HOH B 18 650 650 HOH HOH . G 3 HOH B 19 651 651 HOH HOH . G 3 HOH B 20 662 662 HOH HOH . G 3 HOH B 21 663 663 HOH HOH . G 3 HOH B 22 667 667 HOH HOH . G 3 HOH B 23 670 670 HOH HOH . G 3 HOH B 24 674 674 HOH HOH . G 3 HOH B 25 679 679 HOH HOH . G 3 HOH B 26 685 685 HOH HOH . G 3 HOH B 27 686 686 HOH HOH . G 3 HOH B 28 693 693 HOH HOH . G 3 HOH B 29 695 695 HOH HOH . G 3 HOH B 30 697 697 HOH HOH . G 3 HOH B 31 699 699 HOH HOH . G 3 HOH B 32 700 700 HOH HOH . G 3 HOH B 33 705 705 HOH HOH . G 3 HOH B 34 708 708 HOH HOH . G 3 HOH B 35 709 709 HOH HOH . G 3 HOH B 36 713 713 HOH HOH . G 3 HOH B 37 715 715 HOH HOH . G 3 HOH B 38 719 719 HOH HOH . G 3 HOH B 39 721 721 HOH HOH . G 3 HOH B 40 722 722 HOH HOH . G 3 HOH B 41 724 724 HOH HOH . G 3 HOH B 42 727 727 HOH HOH . G 3 HOH B 43 733 733 HOH HOH . G 3 HOH B 44 738 738 HOH HOH . G 3 HOH B 45 744 744 HOH HOH . G 3 HOH B 46 745 745 HOH HOH . G 3 HOH B 47 749 749 HOH HOH . G 3 HOH B 48 759 759 HOH HOH . G 3 HOH B 49 763 763 HOH HOH . G 3 HOH B 50 764 764 HOH HOH . G 3 HOH B 51 780 780 HOH HOH . G 3 HOH B 52 782 782 HOH HOH . G 3 HOH B 53 784 784 HOH HOH . G 3 HOH B 54 786 786 HOH HOH . G 3 HOH B 55 787 787 HOH HOH . G 3 HOH B 56 788 788 HOH HOH . G 3 HOH B 57 803 803 HOH HOH . G 3 HOH B 58 804 804 HOH HOH . G 3 HOH B 59 805 805 HOH HOH . G 3 HOH B 60 817 817 HOH HOH . G 3 HOH B 61 819 819 HOH HOH . G 3 HOH B 62 820 820 HOH HOH . G 3 HOH B 63 821 821 HOH HOH . G 3 HOH B 64 822 822 HOH HOH . G 3 HOH B 65 824 824 HOH HOH . G 3 HOH B 66 826 826 HOH HOH . G 3 HOH B 67 827 827 HOH HOH . G 3 HOH B 68 833 833 HOH HOH . G 3 HOH B 69 836 836 HOH HOH . G 3 HOH B 70 837 837 HOH HOH . G 3 HOH B 71 839 839 HOH HOH . G 3 HOH B 72 841 841 HOH HOH . G 3 HOH B 73 842 842 HOH HOH . G 3 HOH B 74 845 845 HOH HOH . G 3 HOH B 75 854 854 HOH HOH . G 3 HOH B 76 855 855 HOH HOH . G 3 HOH B 77 861 861 HOH HOH . G 3 HOH B 78 863 863 HOH HOH . G 3 HOH B 79 865 865 HOH HOH . G 3 HOH B 80 866 866 HOH HOH . G 3 HOH B 81 868 868 HOH HOH . G 3 HOH B 82 871 871 HOH HOH . G 3 HOH B 83 878 878 HOH HOH . G 3 HOH B 84 880 880 HOH HOH . G 3 HOH B 85 887 887 HOH HOH . G 3 HOH B 86 888 888 HOH HOH . G 3 HOH B 87 900 900 HOH HOH . G 3 HOH B 88 901 901 HOH HOH . H 3 HOH C 1 602 602 HOH HOH . H 3 HOH C 2 603 603 HOH HOH . H 3 HOH C 3 604 604 HOH HOH . H 3 HOH C 4 606 606 HOH HOH . H 3 HOH C 5 612 612 HOH HOH . H 3 HOH C 6 619 619 HOH HOH . H 3 HOH C 7 623 623 HOH HOH . H 3 HOH C 8 627 627 HOH HOH . H 3 HOH C 9 629 629 HOH HOH . H 3 HOH C 10 630 630 HOH HOH . H 3 HOH C 11 633 633 HOH HOH . H 3 HOH C 12 643 643 HOH HOH . H 3 HOH C 13 644 644 HOH HOH . H 3 HOH C 14 647 647 HOH HOH . H 3 HOH C 15 648 648 HOH HOH . H 3 HOH C 16 649 649 HOH HOH . H 3 HOH C 17 652 652 HOH HOH . H 3 HOH C 18 654 654 HOH HOH . H 3 HOH C 19 656 656 HOH HOH . H 3 HOH C 20 668 668 HOH HOH . H 3 HOH C 21 672 672 HOH HOH . H 3 HOH C 22 673 673 HOH HOH . H 3 HOH C 23 675 675 HOH HOH . H 3 HOH C 24 683 683 HOH HOH . H 3 HOH C 25 689 689 HOH HOH . H 3 HOH C 26 692 692 HOH HOH . H 3 HOH C 27 694 694 HOH HOH . H 3 HOH C 28 698 698 HOH HOH . H 3 HOH C 29 702 702 HOH HOH . H 3 HOH C 30 704 704 HOH HOH . H 3 HOH C 31 706 706 HOH HOH . H 3 HOH C 32 710 710 HOH HOH . H 3 HOH C 33 711 711 HOH HOH . H 3 HOH C 34 714 714 HOH HOH . H 3 HOH C 35 716 716 HOH HOH . H 3 HOH C 36 723 723 HOH HOH . H 3 HOH C 37 726 726 HOH HOH . H 3 HOH C 38 730 730 HOH HOH . H 3 HOH C 39 732 732 HOH HOH . H 3 HOH C 40 736 736 HOH HOH . H 3 HOH C 41 742 742 HOH HOH . H 3 HOH C 42 743 743 HOH HOH . H 3 HOH C 43 747 747 HOH HOH . H 3 HOH C 44 750 750 HOH HOH . H 3 HOH C 45 752 752 HOH HOH . H 3 HOH C 46 753 753 HOH HOH . H 3 HOH C 47 755 755 HOH HOH . H 3 HOH C 48 756 756 HOH HOH . H 3 HOH C 49 757 757 HOH HOH . H 3 HOH C 50 758 758 HOH HOH . H 3 HOH C 51 762 762 HOH HOH . H 3 HOH C 52 769 769 HOH HOH . H 3 HOH C 53 770 770 HOH HOH . H 3 HOH C 54 771 771 HOH HOH . H 3 HOH C 55 774 774 HOH HOH . H 3 HOH C 56 778 778 HOH HOH . H 3 HOH C 57 779 779 HOH HOH . H 3 HOH C 58 785 785 HOH HOH . H 3 HOH C 59 791 791 HOH HOH . H 3 HOH C 60 793 793 HOH HOH . H 3 HOH C 61 795 795 HOH HOH . H 3 HOH C 62 797 797 HOH HOH . H 3 HOH C 63 798 798 HOH HOH . H 3 HOH C 64 799 799 HOH HOH . H 3 HOH C 65 801 801 HOH HOH . H 3 HOH C 66 802 802 HOH HOH . H 3 HOH C 67 807 807 HOH HOH . H 3 HOH C 68 809 809 HOH HOH . H 3 HOH C 69 811 811 HOH HOH . H 3 HOH C 70 812 812 HOH HOH . H 3 HOH C 71 813 813 HOH HOH . H 3 HOH C 72 814 814 HOH HOH . H 3 HOH C 73 815 815 HOH HOH . H 3 HOH C 74 818 818 HOH HOH . H 3 HOH C 75 823 823 HOH HOH . H 3 HOH C 76 825 825 HOH HOH . H 3 HOH C 77 830 830 HOH HOH . H 3 HOH C 78 831 831 HOH HOH . H 3 HOH C 79 835 835 HOH HOH . H 3 HOH C 80 838 838 HOH HOH . H 3 HOH C 81 840 840 HOH HOH . H 3 HOH C 82 846 846 HOH HOH . H 3 HOH C 83 847 847 HOH HOH . H 3 HOH C 84 848 848 HOH HOH . H 3 HOH C 85 849 849 HOH HOH . H 3 HOH C 86 850 850 HOH HOH . H 3 HOH C 87 853 853 HOH HOH . H 3 HOH C 88 856 856 HOH HOH . H 3 HOH C 89 860 860 HOH HOH . H 3 HOH C 90 864 864 HOH HOH . H 3 HOH C 91 867 867 HOH HOH . H 3 HOH C 92 870 870 HOH HOH . H 3 HOH C 93 875 875 HOH HOH . H 3 HOH C 94 879 879 HOH HOH . H 3 HOH C 95 884 884 HOH HOH . H 3 HOH C 96 890 890 HOH HOH . H 3 HOH C 97 891 891 HOH HOH . H 3 HOH C 98 892 892 HOH HOH . H 3 HOH C 99 906 906 HOH HOH . H 3 HOH C 100 907 907 HOH HOH . H 3 HOH C 101 909 909 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -8.774 36.741 -6.566 1 16.27 ? C1 GOL 599 A 1 HETATM 2 O O1 GOL . . . D 2 -8.739 35.398 -5.993 1 25.19 ? O1 GOL 599 A 1 HETATM 3 C C2 GOL . . . D 2 -7.3 37.254 -6.809 1 15.51 ? C2 GOL 599 A 1 HETATM 4 O O2 GOL . . . D 2 -6.585 36.483 -7.805 1 14.76 ? O2 GOL 599 A 1 HETATM 5 C C3 GOL . . . D 2 -6.512 37.187 -5.456 1 16.64 ? C3 GOL 599 A 1 HETATM 6 O O3 GOL . . . D 2 -5.167 37.706 -5.571 1 11.86 ? O3 GOL 599 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #