data_1C6O
#
_model_server_result.job_id            mbAmvHr1jFQc4QSliJk_jw 
_model_server_result.datetime_utc      '2024-11-21 23:44:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1c6o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":90}' 
#
_entry.id    1C6O 
#
_exptl.entry_id    1C6O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1C6O 
_cell.length_a            49.56 
_cell.length_b            49.56 
_cell.length_c            152.44 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1C6O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 15 A CYS 15 1_555 C CAB HEM . A HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? 
covale ? covale2 A SG CYS 18 A CYS 18 1_555 C CAC HEM . A HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
covale ? covale3 B SG CYS 15 B CYS 15 1_555 D CAB HEM . B HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? 
covale ? covale4 B SG CYS 18 B CYS 18 1_555 D CAC HEM . B HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? 
metalc ? metalc1 A NE2 HIS 19 A HIS 19 1_555 C FE HEM . A HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc2 A SD MET 61 A MET 61 1_555 C FE HEM . A HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc3 B NE2 HIS 19 B HIS 19 1_555 D FE HEM . B HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc4 B SD MET 61 B MET 61 1_555 D FE HEM . B HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1C6O 
_atom_sites.fract_transf_matrix[1][1]    0.020177 
_atom_sites.fract_transf_matrix[1][2]    0.011649 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023299 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 90 90 HEM HEM . 
D 2 HEM B 1 90 90 HEM HEM . 
E 3 HOH A 1 401 401 HOH HOH . 
E 3 HOH A 2 402 402 HOH HOH . 
E 3 HOH A 3 405 405 HOH HOH . 
E 3 HOH A 4 407 407 HOH HOH . 
E 3 HOH A 5 408 408 HOH HOH . 
E 3 HOH A 6 409 409 HOH HOH . 
E 3 HOH A 7 412 412 HOH HOH . 
E 3 HOH A 8 416 416 HOH HOH . 
E 3 HOH A 9 417 417 HOH HOH . 
E 3 HOH A 10 418 418 HOH HOH . 
E 3 HOH A 11 420 420 HOH HOH . 
E 3 HOH A 12 421 421 HOH HOH . 
E 3 HOH A 13 423 423 HOH HOH . 
E 3 HOH A 14 424 424 HOH HOH . 
E 3 HOH A 15 426 426 HOH HOH . 
E 3 HOH A 16 428 428 HOH HOH . 
E 3 HOH A 17 429 429 HOH HOH . 
E 3 HOH A 18 432 432 HOH HOH . 
E 3 HOH A 19 434 434 HOH HOH . 
E 3 HOH A 20 435 435 HOH HOH . 
E 3 HOH A 21 437 437 HOH HOH . 
E 3 HOH A 22 438 438 HOH HOH . 
E 3 HOH A 23 439 439 HOH HOH . 
E 3 HOH A 24 442 442 HOH HOH . 
E 3 HOH A 25 443 443 HOH HOH . 
E 3 HOH A 26 444 444 HOH HOH . 
E 3 HOH A 27 448 448 HOH HOH . 
E 3 HOH A 28 456 456 HOH HOH . 
E 3 HOH A 29 457 457 HOH HOH . 
E 3 HOH A 30 458 458 HOH HOH . 
E 3 HOH A 31 459 459 HOH HOH . 
E 3 HOH A 32 460 460 HOH HOH . 
E 3 HOH A 33 461 461 HOH HOH . 
E 3 HOH A 34 462 462 HOH HOH . 
E 3 HOH A 35 463 463 HOH HOH . 
E 3 HOH A 36 464 464 HOH HOH . 
E 3 HOH A 37 465 465 HOH HOH . 
E 3 HOH A 38 466 466 HOH HOH . 
E 3 HOH A 39 467 467 HOH HOH . 
E 3 HOH A 40 468 468 HOH HOH . 
E 3 HOH A 41 469 469 HOH HOH . 
E 3 HOH A 42 475 475 HOH HOH . 
E 3 HOH A 43 477 477 HOH HOH . 
E 3 HOH A 44 479 479 HOH HOH . 
E 3 HOH A 45 483 483 HOH HOH . 
E 3 HOH A 46 485 485 HOH HOH . 
E 3 HOH A 47 486 486 HOH HOH . 
E 3 HOH A 48 487 487 HOH HOH . 
E 3 HOH A 49 488 488 HOH HOH . 
E 3 HOH A 50 489 489 HOH HOH . 
E 3 HOH A 51 490 490 HOH HOH . 
E 3 HOH A 52 491 491 HOH HOH . 
F 3 HOH B 1 403 403 HOH HOH . 
F 3 HOH B 2 404 404 HOH HOH . 
F 3 HOH B 3 406 406 HOH HOH . 
F 3 HOH B 4 410 410 HOH HOH . 
F 3 HOH B 5 411 411 HOH HOH . 
F 3 HOH B 6 413 413 HOH HOH . 
F 3 HOH B 7 414 414 HOH HOH . 
F 3 HOH B 8 415 415 HOH HOH . 
F 3 HOH B 9 419 419 HOH HOH . 
F 3 HOH B 10 422 422 HOH HOH . 
F 3 HOH B 11 425 425 HOH HOH . 
F 3 HOH B 12 427 427 HOH HOH . 
F 3 HOH B 13 430 430 HOH HOH . 
F 3 HOH B 14 431 431 HOH HOH . 
F 3 HOH B 15 433 433 HOH HOH . 
F 3 HOH B 16 436 436 HOH HOH . 
F 3 HOH B 17 440 440 HOH HOH . 
F 3 HOH B 18 441 441 HOH HOH . 
F 3 HOH B 19 445 445 HOH HOH . 
F 3 HOH B 20 446 446 HOH HOH . 
F 3 HOH B 21 447 447 HOH HOH . 
F 3 HOH B 22 449 449 HOH HOH . 
F 3 HOH B 23 450 450 HOH HOH . 
F 3 HOH B 24 451 451 HOH HOH . 
F 3 HOH B 25 452 452 HOH HOH . 
F 3 HOH B 26 453 453 HOH HOH . 
F 3 HOH B 27 454 454 HOH HOH . 
F 3 HOH B 28 455 455 HOH HOH . 
F 3 HOH B 29 470 470 HOH HOH . 
F 3 HOH B 30 471 471 HOH HOH . 
F 3 HOH B 31 472 472 HOH HOH . 
F 3 HOH B 32 473 473 HOH HOH . 
F 3 HOH B 33 474 474 HOH HOH . 
F 3 HOH B 34 476 476 HOH HOH . 
F 3 HOH B 35 478 478 HOH HOH . 
F 3 HOH B 36 480 480 HOH HOH . 
F 3 HOH B 37 481 481 HOH HOH . 
F 3 HOH B 38 482 482 HOH HOH . 
F 3 HOH B 39 484 484 HOH HOH . 
F 3 HOH B 40 492 492 HOH HOH . 
F 3 HOH B 41 493 493 HOH HOH . 
F 3 HOH B 42 494 494 HOH HOH . 
F 3 HOH B 43 495 495 HOH HOH . 
F 3 HOH B 44 496 496 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 2 -7.311 32.769 14.363 1 24.75 ? CHA HEM 90 B 1 
HETATM 2 C CHB HEM . . . D 2 -2.702 33.654 15.837 1 24.21 ? CHB HEM 90 B 1 
HETATM 3 C CHC HEM . . . D 2 -1.27 29.495 13.782 1 23.47 ? CHC HEM 90 B 1 
HETATM 4 C CHD HEM . . . D 2 -5.685 29.045 11.688 1 26.03 ? CHD HEM 90 B 1 
HETATM 5 C C1A HEM . . . D 2 -6.185 33.305 14.986 1 22.64 ? C1A HEM 90 B 1 
HETATM 6 C C2A HEM . . . D 2 -6.2 34.552 15.668 1 19.67 ? C2A HEM 90 B 1 
HETATM 7 C C3A HEM . . . D 2 -4.953 34.796 16.114 1 22.84 ? C3A HEM 90 B 1 
HETATM 8 C C4A HEM . . . D 2 -4.117 33.69 15.673 1 25.1 ? C4A HEM 90 B 1 
HETATM 9 C CMA HEM . . . D 2 -4.56 36.056 16.916 1 25.98 ? CMA HEM 90 B 1 
HETATM 10 C CAA HEM . . . D 2 -7.384 35.46 15.83 1 20.37 ? CAA HEM 90 B 1 
HETATM 11 C CBA HEM . . . D 2 -7.739 36.306 14.624 1 19.09 ? CBA HEM 90 B 1 
HETATM 12 C CGA HEM . . . D 2 -9.131 36.882 14.708 1 26.1 ? CGA HEM 90 B 1 
HETATM 13 O O1A HEM . . . D 2 -9.489 37.76 13.889 1 22.91 ? O1A HEM 90 B 1 
HETATM 14 O O2A HEM . . . D 2 -9.899 36.447 15.588 1 31.06 ? O2A HEM 90 B 1 
HETATM 15 C C1B HEM . . . D 2 -1.889 32.651 15.415 1 20.74 ? C1B HEM 90 B 1 
HETATM 16 C C2B HEM . . . D 2 -0.484 32.479 15.761 1 20.17 ? C2B HEM 90 B 1 
HETATM 17 C C3B HEM . . . D 2 -0.063 31.244 15.267 1 22.75 ? C3B HEM 90 B 1 
HETATM 18 C C4B HEM . . . D 2 -1.252 30.676 14.562 1 23.8 ? C4B HEM 90 B 1 
HETATM 19 C CMB HEM . . . D 2 0.372 33.511 16.439 1 20.14 ? CMB HEM 90 B 1 
HETATM 20 C CAB HEM . . . D 2 1.203 30.63 15.296 1 24.12 ? CAB HEM 90 B 1 
HETATM 21 C CBB HEM . . . D 2 1.707 30.115 16.515 1 21.76 ? CBB HEM 90 B 1 
HETATM 22 C C1C HEM . . . D 2 -2.359 29.033 13.03 1 24.58 ? C1C HEM 90 B 1 
HETATM 23 C C2C HEM . . . D 2 -2.285 27.957 12.067 1 26.22 ? C2C HEM 90 B 1 
HETATM 24 C C3C HEM . . . D 2 -3.473 27.857 11.387 1 27.67 ? C3C HEM 90 B 1 
HETATM 25 C C4C HEM . . . D 2 -4.295 28.896 11.995 1 27.47 ? C4C HEM 90 B 1 
HETATM 26 C CMC HEM . . . D 2 -1.098 27.039 11.879 1 20.9 ? CMC HEM 90 B 1 
HETATM 27 C CAC HEM . . . D 2 -3.849 26.932 10.339 1 32.43 ? CAC HEM 90 B 1 
HETATM 28 C CBC HEM . . . D 2 -3.89 25.494 10.49 1 20.09 ? CBC HEM 90 B 1 
HETATM 29 C C1D HEM . . . D 2 -6.538 29.939 12.305 1 20.66 ? C1D HEM 90 B 1 
HETATM 30 C C2D HEM . . . D 2 -7.981 29.9 12.275 1 25.19 ? C2D HEM 90 B 1 
HETATM 31 C C3D HEM . . . D 2 -8.4 30.929 13.09 1 26.73 ? C3D HEM 90 B 1 
HETATM 32 C C4D HEM . . . D 2 -7.252 31.605 13.597 1 24.2 ? C4D HEM 90 B 1 
HETATM 33 C CMD HEM . . . D 2 -8.889 28.944 11.522 1 20.11 ? CMD HEM 90 B 1 
HETATM 34 C CAD HEM . . . D 2 -9.804 31.276 13.545 1 22.34 ? CAD HEM 90 B 1 
HETATM 35 C CBD HEM . . . D 2 -10.115 30.484 14.792 1 26.68 ? CBD HEM 90 B 1 
HETATM 36 C CGD HEM . . . D 2 -11.574 30.572 15.15 1 38.15 ? CGD HEM 90 B 1 
HETATM 37 O O1D HEM . . . D 2 -11.999 31.632 15.671 1 38.85 ? O1D HEM 90 B 1 
HETATM 38 O O2D HEM . . . D 2 -12.294 29.592 14.867 1 37.23 ? O2D HEM 90 B 1 
HETATM 39 N NA HEM . . . D 2 -4.88 32.765 14.934 1 23.2 ? NA HEM 90 B 1 
HETATM 40 N NB HEM . . . D 2 -2.373 31.537 14.695 1 26.08 ? NB HEM 90 B 1 
HETATM 41 N NC HEM . . . D 2 -3.594 29.615 12.993 1 21.98 ? NC HEM 90 B 1 
HETATM 42 N ND HEM . . . D 2 -6.097 30.925 13.21 1 27.34 ? ND HEM 90 B 1 
HETATM 43 FE FE HEM . . . D 2 -4.236 31.169 13.953 1 25.73 ? FE HEM 90 B 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#