data_1C6R # _model_server_result.job_id FwcqbVMQxVH-WwFSTytqrg _model_server_result.datetime_utc '2025-03-04 22:01:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":90}' # _entry.id 1C6R # _exptl.entry_id 1C6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1C6R _cell.length_a 35.56 _cell.length_b 48.47 _cell.length_c 43.92 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 15 A CYS 15 1_555 F CAB HEM . A HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? covale ? covale2 A SG CYS 18 A CYS 18 1_555 F CAC HEM . A HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc1 A OD2 ASP 3 A ASP 3 1_555 B CD CD . A CD 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc2 A OD2 ASP 3 A ASP 3 2_555 B CD CD . A CD 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc3 A NE2 HIS 19 A HIS 19 1_555 F FE HEM . A HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 A NE2 HIS 30 A HIS 30 1_555 D CD CD . A CD 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc5 A OE1 GLU 48 A GLU 48 4_456 C CD CD . A CD 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc6 A OE2 GLU 48 A GLU 48 4_456 C CD CD . A CD 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? metalc ? metalc7 A SD MET 61 A MET 61 1_555 F FE HEM . A HEM 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc8 A OD2 ASP 69 A ASP 69 1_555 C CD CD . A CD 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc9 A OD1 ASP 69 A ASP 69 1_555 C CD CD . A CD 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc10 A OD1 ASP 71 A ASP 71 1_555 C CD CD . A CD 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc11 A OD2 ASP 71 A ASP 71 1_555 C CD CD . A CD 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc12 A O TRP 89 A TRP 89 1_555 E CD CD . A CD 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.641 ? metalc ? metalc13 A OXT TRP 89 A TRP 89 1_555 E CD CD . A CD 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc14 A OXT TRP 89 A TRP 89 2_655 E CD CD . A CD 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc15 A O TRP 89 A TRP 89 2_655 E CD CD . A CD 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.641 ? metalc ? metalc16 F O1D HEM . A HEM 90 1_555 D CD CD . A CD 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc17 B CD CD . A CD 91 1_555 G O HOH . A HOH 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc18 B CD CD . A CD 91 1_555 G O HOH . A HOH 120 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc19 B CD CD . A CD 91 1_555 G O HOH . A HOH 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.756 ? metalc ? metalc20 B CD CD . A CD 91 1_555 G O HOH . A HOH 149 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.756 ? metalc ? metalc21 C CD CD . A CD 92 1_555 G O HOH . A HOH 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc22 D CD CD . A CD 93 1_555 G O HOH . A HOH 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? metalc ? metalc23 E CD CD . A CD 94 1_555 G O HOH . A HOH 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc24 E CD CD . A CD 94 1_555 G O HOH . A HOH 162 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1C6R _atom_sites.fract_transf_matrix[1][1] 0.028121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 91 91 CD CD . C 2 CD A 1 92 92 CD CD . D 2 CD A 1 93 93 CD CD . E 2 CD A 1 94 94 CD CD . F 3 HEM A 1 90 90 HEM HEM . G 4 HOH A 1 100 100 HOH HOH . G 4 HOH A 2 101 101 HOH HOH . G 4 HOH A 3 102 102 HOH HOH . G 4 HOH A 4 103 103 HOH HOH . G 4 HOH A 5 104 104 HOH HOH . G 4 HOH A 6 105 105 HOH HOH . G 4 HOH A 7 106 106 HOH HOH . G 4 HOH A 8 107 107 HOH HOH . G 4 HOH A 9 108 108 HOH HOH . G 4 HOH A 10 109 109 HOH HOH . G 4 HOH A 11 110 110 HOH HOH . G 4 HOH A 12 111 111 HOH HOH . G 4 HOH A 13 112 112 HOH HOH . G 4 HOH A 14 113 113 HOH HOH . G 4 HOH A 15 114 114 HOH HOH . G 4 HOH A 16 115 115 HOH HOH . G 4 HOH A 17 116 116 HOH HOH . G 4 HOH A 18 117 117 HOH HOH . G 4 HOH A 19 118 118 HOH HOH . G 4 HOH A 20 119 119 HOH HOH . G 4 HOH A 21 120 120 HOH HOH . G 4 HOH A 22 121 121 HOH HOH . G 4 HOH A 23 122 122 HOH HOH . G 4 HOH A 24 123 123 HOH HOH . G 4 HOH A 25 124 124 HOH HOH . G 4 HOH A 26 125 125 HOH HOH . G 4 HOH A 27 126 126 HOH HOH . G 4 HOH A 28 127 127 HOH HOH . G 4 HOH A 29 128 128 HOH HOH . G 4 HOH A 30 129 129 HOH HOH . G 4 HOH A 31 130 130 HOH HOH . G 4 HOH A 32 131 131 HOH HOH . G 4 HOH A 33 132 132 HOH HOH . G 4 HOH A 34 133 133 HOH HOH . G 4 HOH A 35 134 134 HOH HOH . G 4 HOH A 36 135 135 HOH HOH . G 4 HOH A 37 136 136 HOH HOH . G 4 HOH A 38 137 137 HOH HOH . G 4 HOH A 39 138 138 HOH HOH . G 4 HOH A 40 139 139 HOH HOH . G 4 HOH A 41 140 140 HOH HOH . G 4 HOH A 42 141 141 HOH HOH . G 4 HOH A 43 142 142 HOH HOH . G 4 HOH A 44 143 143 HOH HOH . G 4 HOH A 45 144 144 HOH HOH . G 4 HOH A 46 145 145 HOH HOH . G 4 HOH A 47 146 146 HOH HOH . G 4 HOH A 48 147 147 HOH HOH . G 4 HOH A 49 148 148 HOH HOH . G 4 HOH A 50 149 149 HOH HOH . G 4 HOH A 51 150 150 HOH HOH . G 4 HOH A 52 151 151 HOH HOH . G 4 HOH A 53 152 152 HOH HOH . G 4 HOH A 54 153 153 HOH HOH . G 4 HOH A 55 154 154 HOH HOH . G 4 HOH A 56 155 155 HOH HOH . G 4 HOH A 57 156 156 HOH HOH . G 4 HOH A 58 157 157 HOH HOH . G 4 HOH A 59 158 158 HOH HOH . G 4 HOH A 60 159 159 HOH HOH . G 4 HOH A 61 160 160 HOH HOH . G 4 HOH A 62 161 161 HOH HOH . G 4 HOH A 63 162 162 HOH HOH . G 4 HOH A 64 163 163 HOH HOH . G 4 HOH A 65 164 164 HOH HOH . G 4 HOH A 66 165 165 HOH HOH . G 4 HOH A 67 166 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . F 3 8.735 15.487 5.374 1 7.81 ? CHA HEM 90 A 1 HETATM 2 C CHB HEM . . . F 3 7.2 12.459 8.761 1 7.01 ? CHB HEM 90 A 1 HETATM 3 C CHC HEM . . . F 3 3.75 11.022 5.782 1 7 ? CHC HEM 90 A 1 HETATM 4 C CHD HEM . . . F 3 5.717 13.521 2.146 1 7 ? CHD HEM 90 A 1 HETATM 5 C C1A HEM . . . F 3 8.67 14.779 6.56 1 7.34 ? C1A HEM 90 A 1 HETATM 6 C C2A HEM . . . F 3 9.56 14.991 7.706 1 7.5 ? C2A HEM 90 A 1 HETATM 7 C C3A HEM . . . F 3 9.051 14.192 8.704 1 7.08 ? C3A HEM 90 A 1 HETATM 8 C C4A HEM . . . F 3 7.94 13.454 8.12 1 7 ? C4A HEM 90 A 1 HETATM 9 C CMA HEM . . . F 3 9.493 14.114 10.165 1 7 ? CMA HEM 90 A 1 HETATM 10 C CAA HEM . . . F 3 10.815 15.92 7.701 1 7.56 ? CAA HEM 90 A 1 HETATM 11 C CBA HEM . . . F 3 11.998 15.412 6.85 1 7.3 ? CBA HEM 90 A 1 HETATM 12 C CGA HEM . . . F 3 13.116 16.439 6.68 1 7.51 ? CGA HEM 90 A 1 HETATM 13 O O1A HEM . . . F 3 14.251 16.03 6.325 1 7.03 ? O1A HEM 90 A 1 HETATM 14 O O2A HEM . . . F 3 12.866 17.65 6.869 1 7 ? O2A HEM 90 A 1 HETATM 15 C C1B HEM . . . F 3 6.098 11.782 8.238 1 7 ? C1B HEM 90 A 1 HETATM 16 C C2B HEM . . . F 3 5.333 10.788 8.931 1 7 ? C2B HEM 90 A 1 HETATM 17 C C3B HEM . . . F 3 4.295 10.442 8.131 1 7 ? C3B HEM 90 A 1 HETATM 18 C C4B HEM . . . F 3 4.479 11.225 6.939 1 7 ? C4B HEM 90 A 1 HETATM 19 C CMB HEM . . . F 3 5.678 10.242 10.31 1 7 ? CMB HEM 90 A 1 HETATM 20 C CAB HEM . . . F 3 3.22 9.557 8.391 1 7 ? CAB HEM 90 A 1 HETATM 21 C CBB HEM . . . F 3 2.224 9.871 9.331 1 7 ? CBB HEM 90 A 1 HETATM 22 C C1C HEM . . . F 3 4 11.535 4.54 1 7 ? C1C HEM 90 A 1 HETATM 23 C C2C HEM . . . F 3 3.264 11.197 3.338 1 7.06 ? C2C HEM 90 A 1 HETATM 24 C C3C HEM . . . F 3 3.857 11.84 2.313 1 7.18 ? C3C HEM 90 A 1 HETATM 25 C C4C HEM . . . F 3 4.947 12.6 2.87 1 7.4 ? C4C HEM 90 A 1 HETATM 26 C CMC HEM . . . F 3 2.19 10.125 3.253 1 7.61 ? CMC HEM 90 A 1 HETATM 27 C CAC HEM . . . F 3 3.625 11.653 0.936 1 8.02 ? CAC HEM 90 A 1 HETATM 28 C CBC HEM . . . F 3 2.443 12.128 0.328 1 8.89 ? CBC HEM 90 A 1 HETATM 29 C C1D HEM . . . F 3 6.634 14.375 2.733 1 7.73 ? C1D HEM 90 A 1 HETATM 30 C C2D HEM . . . F 3 7.324 15.495 2.068 1 7.16 ? C2D HEM 90 A 1 HETATM 31 C C3D HEM . . . F 3 8.118 16.086 2.995 1 7.82 ? C3D HEM 90 A 1 HETATM 32 C C4D HEM . . . F 3 7.947 15.317 4.238 1 7.72 ? C4D HEM 90 A 1 HETATM 33 C CMD HEM . . . F 3 7.232 15.862 0.614 1 7.66 ? CMD HEM 90 A 1 HETATM 34 C CAD HEM . . . F 3 9.001 17.297 2.816 1 7.51 ? CAD HEM 90 A 1 HETATM 35 C CBD HEM . . . F 3 8.309 18.487 3.442 1 9.26 ? CBD HEM 90 A 1 HETATM 36 C CGD HEM . . . F 3 8.967 19.803 3.062 1 9.6 ? CGD HEM 90 A 1 HETATM 37 O O1D HEM . . . F 3 9.935 20.22 3.735 1 11.88 ? O1D HEM 90 A 1 HETATM 38 O O2D HEM . . . F 3 8.548 20.422 2.068 1 10.91 ? O2D HEM 90 A 1 HETATM 39 N NA HEM . . . F 3 7.704 13.845 6.815 1 7.33 ? NA HEM 90 A 1 HETATM 40 N NB HEM . . . F 3 5.584 12.017 7.002 1 7 ? NB HEM 90 A 1 HETATM 41 N NC HEM . . . F 3 5.036 12.387 4.26 1 7.47 ? NC HEM 90 A 1 HETATM 42 N ND HEM . . . F 3 6.991 14.326 4.102 1 7.43 ? ND HEM 90 A 1 HETATM 43 FE FE HEM . . . F 3 6.33 13.14 5.558 1 8.3 ? FE HEM 90 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #