data_1C6Y
#
_model_server_result.job_id            iwuY4CQrFHIj1zaLN3JJig 
_model_server_result.datetime_utc      '2024-10-19 19:45:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1c6y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":524}' 
#
_entry.id    1C6Y 
#
_exptl.entry_id    1C6Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              613.789 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1C6Y 
_cell.length_a            58.44 
_cell.length_b            88.26 
_cell.length_c            42.94 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1C6Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C36 H47 N5 O4' 
_chem_comp.formula_weight    613.789 
_chem_comp.id                MK1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     INDINAVIR 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 MK1 sing 237 n n 
N1 C9 MK1 sing 238 n n 
N1 C31 MK1 sing 239 n n 
C1 C2 MK1 sing 240 n n 
C1 H11A MK1 sing 241 n n 
C1 H12 MK1 sing 242 n n 
C2 C3 MK1 sing 243 n n 
C2 N3 MK1 sing 244 n n 
C2 H2 MK1 sing 245 n n 
C3 O1 MK1 doub 246 n n 
C3 N2 MK1 sing 247 n n 
N2 C4 MK1 sing 248 n n 
N2 HN2 MK1 sing 249 n n 
C4 C5 MK1 sing 250 n n 
C4 C6 MK1 sing 251 n n 
C4 C7 MK1 sing 252 n n 
C5 H51 MK1 sing 253 n n 
C5 H52 MK1 sing 254 n n 
C5 H53 MK1 sing 255 n n 
C6 H61 MK1 sing 256 n n 
C6 H62 MK1 sing 257 n n 
C6 H63 MK1 sing 258 n n 
C7 H71 MK1 sing 259 n n 
C7 H72 MK1 sing 260 n n 
C7 H73 MK1 sing 261 n n 
N3 C8 MK1 sing 262 n n 
N3 C10 MK1 sing 263 n n 
C8 C9 MK1 sing 264 n n 
C8 H81 MK1 sing 265 n n 
C8 H82 MK1 sing 266 n n 
C9 H91 MK1 sing 267 n n 
C9 H92 MK1 sing 268 n n 
C10 C11 MK1 sing 269 n n 
C10 H101 MK1 sing 270 n n 
C10 H102 MK1 sing 271 n n 
C11 O2 MK1 sing 272 n n 
C11 C12 MK1 sing 273 n n 
C11 H11 MK1 sing 274 n n 
O2 HO2 MK1 sing 275 n n 
C12 C13 MK1 sing 276 n n 
C12 H121 MK1 sing 277 n n 
C12 H122 MK1 sing 278 n n 
C13 C14 MK1 sing 279 n n 
C13 C21 MK1 sing 280 n n 
C13 H13 MK1 sing 281 n n 
C14 C15 MK1 sing 282 n n 
C14 H141 MK1 sing 283 n n 
C14 H142 MK1 sing 284 n n 
C15 C16 MK1 doub 285 n y 
C15 C20 MK1 sing 286 n y 
C16 C17 MK1 sing 287 n y 
C16 H16 MK1 sing 288 n n 
C17 C18 MK1 doub 289 n y 
C17 H17 MK1 sing 290 n n 
C18 C19 MK1 sing 291 n y 
C18 H18 MK1 sing 292 n n 
C19 C20 MK1 doub 293 n y 
C19 H19 MK1 sing 294 n n 
C20 H20 MK1 sing 295 n n 
C21 O3 MK1 doub 296 n n 
C21 N4 MK1 sing 297 n n 
N4 C22 MK1 sing 298 n n 
N4 HN4 MK1 sing 299 n n 
C22 C23 MK1 sing 300 n n 
C22 C30 MK1 sing 301 n n 
C22 H22 MK1 sing 302 n n 
C23 O4 MK1 sing 303 n n 
C23 C24 MK1 sing 304 n n 
C23 H23 MK1 sing 305 n n 
O4 HO4 MK1 sing 306 n n 
C24 C25 MK1 sing 307 n n 
C24 H241 MK1 sing 308 n n 
C24 H242 MK1 sing 309 n n 
C25 C26 MK1 doub 310 n y 
C25 C30 MK1 sing 311 n y 
C26 C27 MK1 sing 312 n y 
C26 H26 MK1 sing 313 n n 
C27 C28 MK1 doub 314 n y 
C27 H27 MK1 sing 315 n n 
C28 C29 MK1 sing 316 n y 
C28 H28 MK1 sing 317 n n 
C29 C30 MK1 doub 318 n y 
C29 H29 MK1 sing 319 n n 
C31 C32 MK1 sing 320 n n 
C31 H311 MK1 sing 321 n n 
C31 H312 MK1 sing 322 n n 
C32 C33 MK1 sing 323 n y 
C32 C36 MK1 doub 324 n y 
C33 N5 MK1 doub 325 n y 
C33 H33 MK1 sing 326 n n 
N5 C34 MK1 sing 327 n y 
C34 C35 MK1 doub 328 n y 
C34 H34 MK1 sing 329 n n 
C35 C36 MK1 sing 330 n y 
C35 H35 MK1 sing 331 n n 
C36 H36 MK1 sing 332 n n 
#
_atom_sites.entry_id                     1C6Y 
_atom_sites.fract_transf_matrix[1][1]    0.017111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01133 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023288 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MK1 B 1 524 524 MK1 L73 . 
D 3 HOH A 1 305 305 HOH HOH . 
D 3 HOH A 2 309 309 HOH HOH . 
D 3 HOH A 3 317 317 HOH HOH . 
D 3 HOH A 4 320 320 HOH HOH . 
D 3 HOH A 5 321 321 HOH HOH . 
D 3 HOH A 6 324 324 HOH HOH . 
D 3 HOH A 7 326 326 HOH HOH . 
D 3 HOH A 8 327 327 HOH HOH . 
D 3 HOH A 9 329 329 HOH HOH . 
D 3 HOH A 10 330 330 HOH HOH . 
D 3 HOH A 11 333 333 HOH HOH . 
D 3 HOH A 12 334 334 HOH HOH . 
D 3 HOH A 13 335 335 HOH HOH . 
D 3 HOH A 14 336 336 HOH HOH . 
D 3 HOH A 15 337 337 HOH HOH . 
D 3 HOH A 16 338 338 HOH HOH . 
D 3 HOH A 17 339 339 HOH HOH . 
D 3 HOH A 18 340 340 HOH HOH . 
D 3 HOH A 19 343 343 HOH HOH . 
D 3 HOH A 20 344 344 HOH HOH . 
D 3 HOH A 21 346 346 HOH HOH . 
D 3 HOH A 22 355 355 HOH HOH . 
D 3 HOH A 23 358 358 HOH HOH . 
D 3 HOH A 24 359 359 HOH HOH . 
D 3 HOH A 25 360 360 HOH HOH . 
D 3 HOH A 26 361 361 HOH HOH . 
D 3 HOH A 27 363 363 HOH HOH . 
D 3 HOH A 28 367 367 HOH HOH . 
D 3 HOH A 29 373 373 HOH HOH . 
D 3 HOH A 30 374 374 HOH HOH . 
D 3 HOH A 31 377 377 HOH HOH . 
D 3 HOH A 32 379 379 HOH HOH . 
D 3 HOH A 33 381 381 HOH HOH . 
D 3 HOH A 34 382 382 HOH HOH . 
D 3 HOH A 35 383 383 HOH HOH . 
D 3 HOH A 36 384 384 HOH HOH . 
E 3 HOH B 1 300 300 HOH HOH . 
E 3 HOH B 2 301 301 HOH HOH . 
E 3 HOH B 3 302 302 HOH HOH . 
E 3 HOH B 4 303 303 HOH HOH . 
E 3 HOH B 5 304 304 HOH HOH . 
E 3 HOH B 6 306 306 HOH HOH . 
E 3 HOH B 7 307 307 HOH HOH . 
E 3 HOH B 8 308 308 HOH HOH . 
E 3 HOH B 9 310 310 HOH HOH . 
E 3 HOH B 10 311 311 HOH HOH . 
E 3 HOH B 11 312 312 HOH HOH . 
E 3 HOH B 12 313 313 HOH HOH . 
E 3 HOH B 13 314 314 HOH HOH . 
E 3 HOH B 14 315 315 HOH HOH . 
E 3 HOH B 15 316 316 HOH HOH . 
E 3 HOH B 16 318 318 HOH HOH . 
E 3 HOH B 17 319 319 HOH HOH . 
E 3 HOH B 18 322 322 HOH HOH . 
E 3 HOH B 19 323 323 HOH HOH . 
E 3 HOH B 20 325 325 HOH HOH . 
E 3 HOH B 21 328 328 HOH HOH . 
E 3 HOH B 22 331 331 HOH HOH . 
E 3 HOH B 23 332 332 HOH HOH . 
E 3 HOH B 24 341 341 HOH HOH . 
E 3 HOH B 25 342 342 HOH HOH . 
E 3 HOH B 26 345 345 HOH HOH . 
E 3 HOH B 27 347 347 HOH HOH . 
E 3 HOH B 28 349 349 HOH HOH . 
E 3 HOH B 29 350 350 HOH HOH . 
E 3 HOH B 30 351 351 HOH HOH . 
E 3 HOH B 31 352 352 HOH HOH . 
E 3 HOH B 32 353 353 HOH HOH . 
E 3 HOH B 33 354 354 HOH HOH . 
E 3 HOH B 34 356 356 HOH HOH . 
E 3 HOH B 35 357 357 HOH HOH . 
E 3 HOH B 36 362 362 HOH HOH . 
E 3 HOH B 37 364 364 HOH HOH . 
E 3 HOH B 38 365 365 HOH HOH . 
E 3 HOH B 39 366 366 HOH HOH . 
E 3 HOH B 40 368 368 HOH HOH . 
E 3 HOH B 41 369 369 HOH HOH . 
E 3 HOH B 42 370 370 HOH HOH . 
E 3 HOH B 43 371 371 HOH HOH . 
E 3 HOH B 44 372 372 HOH HOH . 
E 3 HOH B 45 375 375 HOH HOH . 
E 3 HOH B 46 376 376 HOH HOH . 
E 3 HOH B 47 378 378 HOH HOH . 
E 3 HOH B 48 380 380 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MK1 . . . C 2 9.699 25.245 3.21 1 20.67 ? N1 MK1 524 B 1 
HETATM 2 C C1 MK1 . . . C 2 9.677 25.359 4.701 1 16.38 ? C1 MK1 524 B 1 
HETATM 3 C C2 MK1 . . . C 2 10.938 26.073 5.155 1 11.45 ? C2 MK1 524 B 1 
HETATM 4 C C3 MK1 . . . C 2 10.894 26.343 6.62 1 9.69 ? C3 MK1 524 B 1 
HETATM 5 O O1 MK1 . . . C 2 11.386 25.544 7.405 1 12.58 ? O1 MK1 524 B 1 
HETATM 6 N N2 MK1 . . . C 2 10.323 27.499 7.059 1 7.45 ? N2 MK1 524 B 1 
HETATM 7 C C4 MK1 . . . C 2 10.366 27.807 8.521 1 9.38 ? C4 MK1 524 B 1 
HETATM 8 C C5 MK1 . . . C 2 11.719 27.591 9.205 1 9.75 ? C5 MK1 524 B 1 
HETATM 9 C C6 MK1 . . . C 2 9.324 26.87 9.23 1 6.08 ? C6 MK1 524 B 1 
HETATM 10 C C7 MK1 . . . C 2 10.148 29.365 8.707 1 9.18 ? C7 MK1 524 B 1 
HETATM 11 N N3 MK1 . . . C 2 12.099 25.25 4.806 1 13.66 ? N3 MK1 524 B 1 
HETATM 12 C C8 MK1 . . . C 2 12.123 25.09 3.323 1 17.03 ? C8 MK1 524 B 1 
HETATM 13 C C9 MK1 . . . C 2 10.85 24.532 2.735 1 12.44 ? C9 MK1 524 B 1 
HETATM 14 C C10 MK1 . . . C 2 13.255 26.174 4.68 1 12.18 ? C10 MK1 524 B 1 
HETATM 15 C C11 MK1 . . . C 2 14.614 25.562 4.997 1 15.81 ? C11 MK1 524 B 1 
HETATM 16 O O2 MK1 . . . C 2 15.546 26.346 4.471 1 7.76 ? O2 MK1 524 B 1 
HETATM 17 C C12 MK1 . . . C 2 14.8 25.469 6.473 1 12.75 ? C12 MK1 524 B 1 
HETATM 18 C C13 MK1 . . . C 2 16.071 24.782 7.001 1 17.07 ? C13 MK1 524 B 1 
HETATM 19 C C14 MK1 . . . C 2 16.165 25.019 8.519 1 21.52 ? C14 MK1 524 B 1 
HETATM 20 C C15 MK1 . . . C 2 17.3 24.162 9.052 1 26.5 ? C15 MK1 524 B 1 
HETATM 21 C C16 MK1 . . . C 2 18.613 24.23 8.504 1 26.46 ? C16 MK1 524 B 1 
HETATM 22 C C17 MK1 . . . C 2 19.648 23.572 9.156 1 25.87 ? C17 MK1 524 B 1 
HETATM 23 C C18 MK1 . . . C 2 19.364 22.896 10.345 1 27.69 ? C18 MK1 524 B 1 
HETATM 24 C C19 MK1 . . . C 2 18.04 22.599 10.733 1 27.15 ? C19 MK1 524 B 1 
HETATM 25 C C20 MK1 . . . C 2 16.988 23.27 10.087 1 27.2 ? C20 MK1 524 B 1 
HETATM 26 C C21 MK1 . . . C 2 16.083 23.175 6.687 1 18.94 ? C21 MK1 524 B 1 
HETATM 27 O O3 MK1 . . . C 2 15.19 22.415 7.073 1 20.63 ? O3 MK1 524 B 1 
HETATM 28 N N4 MK1 . . . C 2 17.148 22.71 6.106 1 17.52 ? N4 MK1 524 B 1 
HETATM 29 C C22 MK1 . . . C 2 17.446 21.276 6.243 1 15.28 ? C22 MK1 524 B 1 
HETATM 30 C C23 MK1 . . . C 2 18.94 20.968 6.518 1 18.23 ? C23 MK1 524 B 1 
HETATM 31 O O4 MK1 . . . C 2 19.684 21.74 5.67 1 17.75 ? O4 MK1 524 B 1 
HETATM 32 C C24 MK1 . . . C 2 19.173 19.45 6.196 1 17.87 ? C24 MK1 524 B 1 
HETATM 33 C C25 MK1 . . . C 2 18.277 19.552 4.918 1 14.63 ? C25 MK1 524 B 1 
HETATM 34 C C26 MK1 . . . C 2 18.441 18.861 3.74 1 14.19 ? C26 MK1 524 B 1 
HETATM 35 C C27 MK1 . . . C 2 17.626 19.336 2.686 1 18.24 ? C27 MK1 524 B 1 
HETATM 36 C C28 MK1 . . . C 2 16.686 20.401 2.763 1 7.82 ? C28 MK1 524 B 1 
HETATM 37 C C29 MK1 . . . C 2 16.496 21.039 3.952 1 10.12 ? C29 MK1 524 B 1 
HETATM 38 C C30 MK1 . . . C 2 17.332 20.607 4.974 1 14.22 ? C30 MK1 524 B 1 
HETATM 39 C C31 MK1 . . . C 2 8.506 24.594 2.586 1 21.79 ? C31 MK1 524 B 1 
HETATM 40 C C32 MK1 . . . C 2 7.926 23.413 3.409 1 42.75 ? C32 MK1 524 B 1 
HETATM 41 C C33 MK1 . . . C 2 6.923 23.613 4.396 1 47.41 ? C33 MK1 524 B 1 
HETATM 42 N N5 MK1 . . . C 2 6.389 22.562 5.062 1 51.38 ? N5 MK1 524 B 1 
HETATM 43 C C34 MK1 . . . C 2 6.753 21.281 4.81 1 50.6 ? C34 MK1 524 B 1 
HETATM 44 C C35 MK1 . . . C 2 7.764 20.961 3.865 1 49.34 ? C35 MK1 524 B 1 
HETATM 45 C C36 MK1 . . . C 2 8.354 22.067 3.173 1 44.71 ? C36 MK1 524 B 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           45 
#