data_1C7E # _model_server_result.job_id QRn087Xd7m5fAkUj_Wt4Og _model_server_result.datetime_utc '2024-12-25 17:14:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2149}' # _entry.id 1C7E # _exptl.entry_id 1C7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.06 _cell.angle_gamma 90 _cell.entry_id 1C7E _cell.length_a 93.041 _cell.length_b 61.508 _cell.length_c 75.559 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1C7E _atom_sites.fract_transf_matrix[1][1] 0.010748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008116 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 1149 149 FMN FMN . D 2 FMN B 1 2149 149 FMN FMN . E 3 HOH A 1 1150 5 HOH HOH . E 3 HOH A 2 1151 7 HOH HOH . E 3 HOH A 3 1152 8 HOH HOH . E 3 HOH A 4 1153 10 HOH HOH . E 3 HOH A 5 1154 12 HOH HOH . E 3 HOH A 6 1155 15 HOH HOH . E 3 HOH A 7 1156 16 HOH HOH . E 3 HOH A 8 1157 20 HOH HOH . E 3 HOH A 9 1158 21 HOH HOH . E 3 HOH A 10 1159 22 HOH HOH . E 3 HOH A 11 1160 23 HOH HOH . E 3 HOH A 12 1161 25 HOH HOH . E 3 HOH A 13 1162 28 HOH HOH . E 3 HOH A 14 1163 29 HOH HOH . E 3 HOH A 15 1164 32 HOH HOH . E 3 HOH A 16 1165 34 HOH HOH . E 3 HOH A 17 1166 36 HOH HOH . E 3 HOH A 18 1167 38 HOH HOH . E 3 HOH A 19 1168 43 HOH HOH . E 3 HOH A 20 1169 44 HOH HOH . E 3 HOH A 21 1170 47 HOH HOH . E 3 HOH A 22 1171 48 HOH HOH . E 3 HOH A 23 1172 57 HOH HOH . E 3 HOH A 24 1173 59 HOH HOH . E 3 HOH A 25 1174 60 HOH HOH . E 3 HOH A 26 1175 62 HOH HOH . E 3 HOH A 27 1176 69 HOH HOH . E 3 HOH A 28 1177 70 HOH HOH . E 3 HOH A 29 1178 71 HOH HOH . E 3 HOH A 30 1179 76 HOH HOH . E 3 HOH A 31 1180 78 HOH HOH . F 3 HOH B 1 2150 1 HOH HOH . F 3 HOH B 2 2151 2 HOH HOH . F 3 HOH B 3 2152 3 HOH HOH . F 3 HOH B 4 2153 4 HOH HOH . F 3 HOH B 5 2154 6 HOH HOH . F 3 HOH B 6 2155 9 HOH HOH . F 3 HOH B 7 2156 11 HOH HOH . F 3 HOH B 8 2157 13 HOH HOH . F 3 HOH B 9 2158 14 HOH HOH . F 3 HOH B 10 2159 17 HOH HOH . F 3 HOH B 11 2160 18 HOH HOH . F 3 HOH B 12 2161 19 HOH HOH . F 3 HOH B 13 2162 24 HOH HOH . F 3 HOH B 14 2163 26 HOH HOH . F 3 HOH B 15 2164 27 HOH HOH . F 3 HOH B 16 2165 30 HOH HOH . F 3 HOH B 17 2166 31 HOH HOH . F 3 HOH B 18 2167 33 HOH HOH . F 3 HOH B 19 2168 35 HOH HOH . F 3 HOH B 20 2169 37 HOH HOH . F 3 HOH B 21 2170 39 HOH HOH . F 3 HOH B 22 2171 40 HOH HOH . F 3 HOH B 23 2172 41 HOH HOH . F 3 HOH B 24 2173 42 HOH HOH . F 3 HOH B 25 2174 45 HOH HOH . F 3 HOH B 26 2175 46 HOH HOH . F 3 HOH B 27 2176 49 HOH HOH . F 3 HOH B 28 2177 50 HOH HOH . F 3 HOH B 29 2178 51 HOH HOH . F 3 HOH B 30 2179 52 HOH HOH . F 3 HOH B 31 2180 53 HOH HOH . F 3 HOH B 32 2181 54 HOH HOH . F 3 HOH B 33 2182 55 HOH HOH . F 3 HOH B 34 2183 56 HOH HOH . F 3 HOH B 35 2184 58 HOH HOH . F 3 HOH B 36 2185 61 HOH HOH . F 3 HOH B 37 2186 63 HOH HOH . F 3 HOH B 38 2187 64 HOH HOH . F 3 HOH B 39 2188 65 HOH HOH . F 3 HOH B 40 2189 66 HOH HOH . F 3 HOH B 41 2190 67 HOH HOH . F 3 HOH B 42 2191 68 HOH HOH . F 3 HOH B 43 2192 72 HOH HOH . F 3 HOH B 44 2193 73 HOH HOH . F 3 HOH B 45 2194 74 HOH HOH . F 3 HOH B 46 2195 75 HOH HOH . F 3 HOH B 47 2196 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 6.765 -0.62 39.015 1 40.58 ? N1 FMN 2149 B 1 HETATM 2 C C2 FMN . . . D 2 5.42 -0.938 38.884 1 36.23 ? C2 FMN 2149 B 1 HETATM 3 O O2 FMN . . . D 2 4.702 -0.598 37.797 1 42.44 ? O2 FMN 2149 B 1 HETATM 4 N N3 FMN . . . D 2 4.685 -1.648 39.781 1 37.81 ? N3 FMN 2149 B 1 HETATM 5 C C4 FMN . . . D 2 5.219 -2.145 40.946 1 37.17 ? C4 FMN 2149 B 1 HETATM 6 O O4 FMN . . . D 2 4.499 -2.821 41.9 1 40.34 ? O4 FMN 2149 B 1 HETATM 7 C C4A FMN . . . D 2 6.584 -1.798 41.149 1 39.48 ? C4A FMN 2149 B 1 HETATM 8 N N5 FMN . . . D 2 7.091 -2.314 42.326 1 37.4 ? N5 FMN 2149 B 1 HETATM 9 C C5A FMN . . . D 2 8.489 -2.294 42.371 1 39.41 ? C5A FMN 2149 B 1 HETATM 10 C C6 FMN . . . D 2 9.025 -3.021 43.491 1 41.6 ? C6 FMN 2149 B 1 HETATM 11 C C7 FMN . . . D 2 10.431 -2.989 43.527 1 53.89 ? C7 FMN 2149 B 1 HETATM 12 C C7M FMN . . . D 2 11.148 -3.689 44.565 1 49.54 ? C7M FMN 2149 B 1 HETATM 13 C C8 FMN . . . D 2 11.184 -2.274 42.598 1 53.25 ? C8 FMN 2149 B 1 HETATM 14 C C8M FMN . . . D 2 12.612 -2.252 42.722 1 59.24 ? C8M FMN 2149 B 1 HETATM 15 C C9 FMN . . . D 2 10.614 -1.545 41.542 1 50.84 ? C9 FMN 2149 B 1 HETATM 16 C C9A FMN . . . D 2 9.196 -1.557 41.45 1 45.1 ? C9A FMN 2149 B 1 HETATM 17 N N10 FMN . . . D 2 8.651 -0.812 40.409 1 47.32 ? N10 FMN 2149 B 1 HETATM 18 C C10 FMN . . . D 2 7.3 -1.05 40.24 1 35.46 ? C10 FMN 2149 B 1 HETATM 19 C C1' FMN . . . D 2 9.328 -0.068 39.417 1 40.96 ? C1' FMN 2149 B 1 HETATM 20 C C2' FMN . . . D 2 9.42 1.379 39.987 1 49.88 ? C2' FMN 2149 B 1 HETATM 21 O O2' FMN . . . D 2 8.109 1.873 40.335 1 43.85 ? O2' FMN 2149 B 1 HETATM 22 C C3' FMN . . . D 2 10.074 2.266 38.935 1 47.96 ? C3' FMN 2149 B 1 HETATM 23 O O3' FMN . . . D 2 11.517 2.007 39.012 1 40.1 ? O3' FMN 2149 B 1 HETATM 24 C C4' FMN . . . D 2 9.892 3.692 38.818 1 37.55 ? C4' FMN 2149 B 1 HETATM 25 O O4' FMN . . . D 2 10.843 4.211 37.848 1 42.83 ? O4' FMN 2149 B 1 HETATM 26 C C5' FMN . . . D 2 10.094 4.448 40.016 1 32.66 ? C5' FMN 2149 B 1 HETATM 27 O O5' FMN . . . D 2 10.05 5.79 39.71 1 39.63 ? O5' FMN 2149 B 1 HETATM 28 P P FMN . . . D 2 10.761 6.929 40.841 1 27.18 ? P FMN 2149 B 1 HETATM 29 O O1P FMN . . . D 2 10.195 6.548 42.277 1 24.41 ? O1P FMN 2149 B 1 HETATM 30 O O2P FMN . . . D 2 9.793 8.329 40.394 1 32.32 ? O2P FMN 2149 B 1 HETATM 31 O O3P FMN . . . D 2 12.215 7.19 40.124 1 38.61 ? O3P FMN 2149 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 39 _model_server_stats.element_count 31 #