data_1C8D # _model_server_result.job_id EqdAbjHFXeW2D7OgyQVm1w _model_server_result.datetime_utc '2025-04-11 20:57:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":585}' # _entry.id 1C8D # _exptl.entry_id 1C8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 61.946 _cell.angle_beta 62.616 _cell.angle_gamma 60.186 _cell.entry_id 1C8D _cell.length_a 267.563 _cell.length_b 268.446 _cell.length_c 274.328 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 'complete icosahedral assembly' 60 'complete icosahedral assembly' 1 ? monomeric 1 'icosahedral asymmetric unit' 2 ? pentameric 5 'icosahedral pentamer' 3 ? hexameric 6 'icosahedral 23 hexamer' 4 ? monomeric 1 'icosahedral asymmetric unit, std point frame' 5 ? 60-meric 60 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 (1-60) A,B 2 1 A,B 3 (1-5) A,B 4 (1,2,6,10,23,24) A,B 5 P A,B 6 (X0)(1-60) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 P 'transform to point frame' ? ? -0.736584 -0.423992 0.526948 0.534456 -0.84235 0.069309 0.414488 0.332682 0.847067 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.586381 -0.789927 0.17937 0.649965 0.326674 -0.686171 0.483429 0.518942 0.70498 0 0 0 3 'point symmetry operation' ? ? -0.082869 -0.628163 0.773656 0.261739 -0.762791 -0.591306 0.961575 0.153495 0.227626 0 0 0 4 'point symmetry operation' ? ? -0.082869 0.261739 0.961575 -0.628163 -0.762791 0.153495 0.773656 -0.591306 0.227626 0 0 0 5 'point symmetry operation' ? ? 0.586381 0.649965 0.483429 -0.789927 0.326674 0.518942 0.17937 -0.686171 0.70498 0 0 0 6 'point symmetry operation' ? ? -0.656399 0.275786 0.702199 0.275786 -0.778645 0.563608 0.702199 0.563608 0.435044 0 0 0 7 'point symmetry operation' ? ? 0.133815 0.972999 0.188061 -0.071912 -0.179734 0.981083 0.988394 -0.144807 0.045919 0 0 0 8 'point symmetry operation' ? ? 0.801795 0.309742 -0.511062 0.315296 0.507216 0.802073 0.507654 -0.804234 0.309023 0 0 0 9 'point symmetry operation' ? ? 0.424417 -0.797386 -0.429006 0.902301 0.332863 0.273963 -0.075654 -0.503367 0.860755 0 0 0 10 'point symmetry operation' ? ? -0.476797 -0.818372 0.32083 0.877882 -0.461843 0.126584 0.044581 0.342006 0.93864 0 0 0 11 'point symmetry operation' ? ? -0.428714 -0.900398 0.074085 -0.900398 0.419106 -0.116764 0.074085 -0.116764 -0.990393 0 0 0 12 'point symmetry operation' ? ? -0.800801 0.082962 0.593156 -0.312019 0.787565 -0.5314 -0.511235 -0.610621 -0.604798 0 0 0 13 'point symmetry operation' ? ? -0.128903 0.967489 0.217597 0.072034 0.227983 -0.970997 -0.989037 -0.10949 -0.09908 0 0 0 14 'point symmetry operation' ? ? 0.65844 0.530798 -0.533583 -0.278988 -0.486316 -0.828048 -0.699015 0.694083 -0.172124 0 0 0 15 'point symmetry operation' ? ? 0.473147 -0.62362 -0.622278 -0.879983 -0.368195 -0.300103 -0.04197 0.689587 -0.722986 0 0 0 16 'point symmetry operation' ? ? 0.085113 0.624612 -0.776284 0.624612 -0.640462 -0.446844 -0.776284 -0.446844 -0.444651 0 0 0 17 'point symmetry operation' ? ? 0.080606 -0.266034 -0.960588 -0.266034 -0.934505 0.236487 -0.960588 0.236487 -0.146101 0 0 0 18 'point symmetry operation' ? ? -0.590023 -0.649068 -0.480191 -0.649068 0.027592 0.76023 -0.480191 0.76023 -0.43757 0 0 0 19 'point symmetry operation' ? ? -0.999988 0.00485 0.001014 0.00485 0.916245 0.40059 0.001014 0.40059 -0.916257 0 0 0 20 'point symmetry operation' ? ? -0.582731 0.792027 -0.181981 0.792027 0.503365 -0.345423 -0.181981 -0.345423 -0.920634 0 0 0 21 'point symmetry operation' ? ? -0.477452 -0.820798 -0.313578 0.622526 -0.06414 -0.779966 0.620082 -0.567606 0.541592 0 0 0 22 'point symmetry operation' ? ? -0.965051 -0.05371 0.256501 -0.05371 -0.91746 -0.394187 0.256501 -0.394187 0.88251 0 0 0 23 'point symmetry operation' ? ? -0.476797 0.877882 0.044581 -0.818372 -0.461843 0.342006 0.32083 0.126584 0.93864 0 0 0 24 'point symmetry operation' ? ? 0.31256 0.68655 -0.656472 -0.614724 0.673063 0.411219 0.724169 0.275018 0.632411 0 0 0 25 'point symmetry operation' ? ? 0.312155 -0.363292 -0.877826 0.2758 0.918857 -0.282198 0.909117 -0.154015 0.387022 0 0 0 26 'point symmetry operation' ? ? -0.13316 0.330701 -0.934294 -0.974005 -0.217969 0.061668 -0.183254 0.918219 0.351129 0 0 0 27 'point symmetry operation' ? ? -0.314803 -0.271627 -0.90946 -0.682999 0.73019 0.018331 0.659099 0.626931 -0.415387 0 0 0 28 'point symmetry operation' ? ? -0.800801 -0.312019 -0.511235 0.082962 0.787565 -0.610621 0.593156 -0.5314 -0.604798 0 0 0 29 'point symmetry operation' ? ? -0.919521 0.265345 -0.289952 0.265345 -0.125134 -0.955999 -0.289952 -0.955999 0.044656 0 0 0 30 'point symmetry operation' ? ? -0.506896 0.662567 -0.551417 -0.387897 -0.746588 -0.540501 -0.7698 -0.060085 0.635451 0 0 0 31 'point symmetry operation' ? ? 0.920503 0.122509 0.371033 -0.266918 -0.49633 0.826082 0.285357 -0.859446 -0.424173 0 0 0 32 'point symmetry operation' ? ? 0.79876 -0.494565 0.342619 -0.07976 0.477396 0.875061 -0.596339 -0.726291 0.341878 0 0 0 33 'point symmetry operation' ? ? 0.31256 -0.614724 0.724169 0.68655 0.673063 0.275018 -0.656472 0.411219 0.632411 0 0 0 34 'point symmetry operation' ? ? 0.133815 -0.071912 0.988394 0.972999 -0.179734 -0.144807 0.188061 0.981083 0.045919 0 0 0 35 'point symmetry operation' ? ? 0.509544 0.383723 0.770144 0.383723 -0.902458 0.195769 0.770144 0.195769 -0.607086 0 0 0 36 'point symmetry operation' ? ? -0.309892 0.367588 0.876839 0.618397 0.778439 -0.107783 -0.722185 0.508834 -0.468547 0 0 0 37 'point symmetry operation' ? ? 0.481094 0.819901 0.31034 0.816469 -0.290126 -0.499205 -0.319261 0.493547 -0.809002 0 0 0 38 'point symmetry operation' ? ? 0.965038 0.04886 -0.257515 0.04886 -0.998785 -0.006403 -0.257515 -0.006403 -0.966253 0 0 0 39 'point symmetry operation' ? ? 0.473147 -0.879983 -0.04197 -0.62362 -0.368195 0.689587 -0.622278 -0.300103 -0.722986 0 0 0 40 'point symmetry operation' ? ? -0.314803 -0.682999 0.659099 -0.271627 0.73019 0.626931 -0.90946 0.018331 -0.415387 0 0 0 41 'point symmetry operation' ? ? -0.477452 0.622526 0.620082 -0.820798 -0.06414 -0.567606 -0.313578 -0.779966 0.541592 0 0 0 42 'point symmetry operation' ? ? 0.424417 0.902301 -0.075654 -0.797386 0.332863 -0.503367 -0.429006 0.273963 0.860755 0 0 0 43 'point symmetry operation' ? ? 0.79876 -0.07976 -0.596339 -0.494565 0.477396 -0.726291 0.342619 0.875061 0.341878 0 0 0 44 'point symmetry operation' ? ? 0.128248 -0.966483 -0.222404 -0.330823 0.16972 -0.928306 0.934938 0.19263 -0.297968 0 0 0 45 'point symmetry operation' ? ? -0.660494 -0.532446 0.529386 -0.532446 -0.164968 -0.830233 0.529386 -0.830233 -0.174539 0 0 0 46 'point symmetry operation' ? ? 0.920503 -0.266918 0.285357 0.122509 -0.49633 -0.859446 0.371033 0.826082 -0.424173 0 0 0 47 'point symmetry operation' ? ? 0.504228 -0.666241 0.549433 -0.666241 -0.704914 -0.243351 0.549433 -0.243351 -0.799314 0 0 0 48 'point symmetry operation' ? ? 0.128248 -0.330823 0.934938 -0.966483 0.16972 0.19263 -0.222404 -0.928306 -0.297968 0 0 0 49 'point symmetry operation' ? ? 0.312155 0.2758 0.909117 -0.363292 0.918857 -0.154015 -0.877826 -0.282198 0.387022 0 0 0 50 'point symmetry operation' ? ? 0.801795 0.315296 0.507654 0.309742 0.507216 -0.804234 -0.511062 0.802073 0.309023 0 0 0 51 'point symmetry operation' ? ? -0.309892 0.618397 -0.722185 0.367588 0.778439 0.508834 0.876839 -0.107783 -0.468547 0 0 0 52 'point symmetry operation' ? ? -0.128903 0.072034 -0.989037 0.967489 0.227983 -0.10949 0.217597 -0.970997 -0.09908 0 0 0 53 'point symmetry operation' ? ? -0.506896 -0.387897 -0.7698 0.662567 -0.746588 -0.060085 -0.551417 -0.540501 0.635451 0 0 0 54 'point symmetry operation' ? ? -0.921497 -0.125786 -0.367452 -0.125786 -0.798451 0.588773 -0.367452 0.588773 0.719948 0 0 0 55 'point symmetry operation' ? ? -0.799742 0.496138 -0.338024 -0.308094 0.144068 0.940384 0.515259 0.856208 0.03764 0 0 0 56 'point symmetry operation' ? ? -0.13316 -0.974005 -0.183254 0.330701 -0.217969 0.918219 -0.934294 0.061668 0.351129 0 0 0 57 'point symmetry operation' ? ? -0.799742 -0.308094 0.515259 0.496138 0.144068 0.856208 -0.338024 0.940384 0.03764 0 0 0 58 'point symmetry operation' ? ? -0.420112 0.79848 0.431202 0.79848 0.099473 0.593746 0.431202 0.593746 -0.67936 0 0 0 59 'point symmetry operation' ? ? 0.481094 0.816469 -0.319261 0.819901 -0.290126 0.493547 0.31034 -0.499205 -0.809002 0 0 0 60 'point symmetry operation' ? ? 0.65844 -0.278988 -0.699015 0.530798 -0.486316 0.694083 -0.533583 -0.828048 -0.172124 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 490 A CYS 490 1_555 A SG CYS 494 A CYS 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A NE ARG 361 A ARG 361 1_555 B CA CA . A CA 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.207 ? metalc ? metalc2 A NH2 ARG 361 A ARG 361 1_555 B CA CA . A CA 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc3 A O HIS 403 A HIS 403 1_555 B CA CA . A CA 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc4 A OD1 ASP 405 A ASP 405 1_555 B CA CA . A CA 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1C8D _atom_sites.fract_transf_matrix[1][1] 0.003737 _atom_sites.fract_transf_matrix[1][2] -0.002141 _atom_sites.fract_transf_matrix[1][3] -0.001331 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004293 _atom_sites.fract_transf_matrix[2][3] -0.001418 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id CA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 585 _pdbx_nonpoly_scheme.auth_seq_num 585 _pdbx_nonpoly_scheme.pdb_mon_id CA _pdbx_nonpoly_scheme.auth_mon_id CA _pdbx_nonpoly_scheme.pdb_ins_code . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 32.374 _atom_site.Cartn_y 34.554 _atom_site.Cartn_z 102.802 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 585 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #