data_1C8G # _model_server_result.job_id OCJ_LmjDZQ8Jfoi8xwlBtQ _model_server_result.datetime_utc '2025-04-22 17:03:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":585}' # _entry.id 1C8G # _exptl.entry_id 1C8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.11 _cell.angle_gamma 90 _cell.entry_id 1C8G _cell.length_a 266.17 _cell.length_b 250.12 _cell.length_c 379.1 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 60-MERIC 60 'complete icosahedral assembly' 1 ? monomeric 1 'icosahedral asymmetric unit' 2 ? pentameric 5 'icosahedral pentamer' 3 ? hexameric 6 'icosahedral 23 hexamer' 4 ? monomeric 1 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 (1-60) A,B,C 2 1 A,B,C 3 (1-5) A,B,C 4 (1,2,6,10,23,24) A,B,C 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 P 'transform to point frame' ? ? 0.522967 0.813197 0.255374 0.370744 0.05276 -0.927235 -0.767499 0.579592 -0.273896 -52.48465 70.58128 69.2064 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.453936 0.52041 0.723267 -0.849998 0.496411 0.176294 -0.267293 -0.694801 0.667687 -40.43364 28.41263 46.23874 3 'point symmetry operation' ? ? -0.429614 -0.007956 0.902978 -0.854915 -0.318413 -0.409552 0.290778 -0.947919 0.129992 -10.55875 85.03708 68.17822 4 'point symmetry operation' ? ? -0.429614 -0.854915 0.290778 -0.007956 -0.318413 -0.947919 0.902978 -0.409552 0.129992 48.33858 91.62029 35.49882 5 'point symmetry operation' ? ? 0.453936 -0.849998 -0.267293 0.52041 0.496411 -0.694801 0.723267 0.176294 0.667687 54.86425 39.06448 -6.63764 6 'point symmetry operation' ? ? 0.178108 -0.889672 0.420429 -0.889672 -0.328146 -0.317496 0.420429 -0.317496 -0.849962 2.56037 77.91296 157.6973 7 'point symmetry operation' ? ? 0.724691 -0.641069 0.252691 -0.040066 -0.405293 -0.913308 0.687908 0.651742 -0.319398 -10.47899 89.88154 92.37575 8 'point symmetry operation' ? ? 0.806328 -0.116667 0.579848 0.570432 0.412525 -0.710233 -0.156341 0.903445 0.399181 -46.31122 37.7559 68.31028 9 'point symmetry operation' ? ? 0.310199 -0.041173 0.94978 0.098135 0.995111 0.011087 -0.945593 0.089767 0.312723 -55.4174 -6.42811 118.75857 10 'point symmetry operation' ? ? -0.078062 -0.518916 0.851254 -0.804259 0.537352 0.253812 -0.589129 -0.664815 -0.45929 -25.21309 18.39032 174.00278 11 'point symmetry operation' ? ? -0.725098 0.039121 -0.687534 0.039121 -0.994433 -0.097842 -0.687534 -0.097842 0.719531 161.12715 5.13777 64.71708 12 'point symmetry operation' ? ? -0.178628 0.119771 -0.9766 0.889177 -0.405308 -0.212345 -0.421256 -0.906301 -0.034098 159.76635 -29.22259 123.0068 13 'point symmetry operation' ? ? 0.078147 0.645039 -0.760144 0.804898 0.409075 0.429879 0.588244 -0.645432 -0.487222 125.23521 -86.50967 112.71268 14 'point symmetry operation' ? ? -0.309627 0.889022 -0.3373 -0.097244 0.323266 0.941298 0.945873 0.324252 -0.01364 105.25459 -87.55467 48.06084 15 'point symmetry operation' ? ? -0.80606 0.514544 -0.292425 -0.570521 -0.544149 0.615149 0.157398 0.662681 0.732175 127.43703 -30.91344 18.39792 16 'point symmetry operation' ? ? -0.45301 0.850551 0.267104 0.850551 0.322579 0.415338 0.267104 0.415338 -0.869569 53.89648 -87.67072 168.80162 17 'point symmetry operation' ? ? -1 0.000888 0.000641 0.000888 0.31419 0.94936 0.000641 0.94936 -0.31419 108.73028 -93.69158 129.59471 18 'point symmetry operation' ? ? -0.454862 -0.520415 -0.722682 -0.520415 -0.503187 0.689906 -0.722682 0.689906 -0.041951 149.21876 -40.90331 142.01482 19 'point symmetry operation' ? ? 0.429041 0.007066 -0.903257 0.007066 -0.999965 -0.004466 -0.903257 -0.004466 -0.429076 119.40822 -2.25751 188.89778 20 'point symmetry operation' ? ? 0.430185 0.85437 -0.291536 0.85437 -0.489613 -0.174159 -0.291536 -0.174159 -0.940572 60.49581 -31.16136 205.45293 21 'point symmetry operation' ? ? -0.492035 0.564102 0.663091 -0.381656 0.544806 -0.746676 -0.782458 -0.620463 -0.052771 16.95929 93.26269 144.81118 22 'point symmetry operation' ? ? -0.880078 -0.43675 0.186312 -0.43675 0.590622 -0.678539 0.186312 -0.678539 -0.710544 83.5422 89.64844 156.37973 23 'point symmetry operation' ? ? -0.078062 -0.804259 -0.589129 -0.518916 0.537352 -0.664815 0.851254 0.253812 -0.45929 115.33256 92.7142 96.71272 24 'point symmetry operation' ? ? 0.805654 -0.03054 -0.591599 -0.514602 0.458613 -0.724471 0.29344 0.888111 0.353767 68.39717 98.2232 48.26793 25 'point symmetry operation' ? ? 0.549804 0.815154 0.182316 -0.429771 0.46322 -0.775064 -0.716249 0.347779 0.60501 7.59915 98.56218 77.99441 26 'point symmetry operation' ? ? -0.310718 0.042113 -0.949569 -0.8666 0.397839 0.301213 0.39046 0.916488 -0.08712 164.21809 16.98419 86.14379 27 'point symmetry operation' ? ? 0.07697 0.518966 -0.851322 -0.812055 -0.462779 -0.35553 -0.578483 0.718686 0.385809 134.07125 77.25534 92.36756 28 'point symmetry operation' ? ? -0.178628 0.889177 -0.421256 0.119771 -0.405308 -0.906301 -0.9766 -0.212345 -0.034098 106.34018 80.50163 154.01679 29 'point symmetry operation' ? ? -0.724286 0.641127 -0.253707 0.641127 0.49083 -0.589952 -0.253707 -0.589952 -0.766544 119.34827 22.2368 185.89433 30 'point symmetry operation' ? ? -0.805922 0.117613 -0.580222 0.031516 0.987201 0.156333 0.591183 0.107706 -0.799314 155.11878 -17.01913 143.94651 31 'point symmetry operation' ? ? -0.077056 -0.645089 0.760212 0.811416 -0.483648 -0.32816 0.579368 0.591562 0.560703 -16.50937 -13.75599 12.13297 32 'point symmetry operation' ? ? 0.310147 -0.888526 0.338127 0.867145 0.410187 0.282498 -0.389702 0.205589 0.8977 3.42886 -75.47991 31.44107 33 'point symmetry operation' ? ? 0.805654 -0.514602 0.29344 -0.03054 0.458613 0.888111 -0.591599 -0.724471 0.353767 -18.72231 -85.8249 94.548 34 'point symmetry operation' ? ? 0.724692 -0.040066 0.687908 -0.641069 -0.405293 0.651742 0.252691 -0.913308 -0.319398 -52.35071 -30.49453 114.24213 35 'point symmetry operation' ? ? 0.179147 -0.120712 0.976389 -0.120712 -0.987642 -0.099955 0.976389 -0.099955 -0.191505 -50.98304 14.04651 63.30685 36 'point symmetry operation' ? ? 0.879809 0.038873 -0.473735 0.436839 -0.458997 0.773623 -0.18737 -0.887587 -0.420812 52.91599 -101.11089 148.12806 37 'point symmetry operation' ? ? 0.492961 0.806311 0.326883 0.38166 -0.53803 0.751571 0.781873 -0.245737 -0.572964 -3.45831 -96.04386 111.02764 38 'point symmetry operation' ? ? -0.548963 0.429684 0.716945 0.429684 -0.590657 0.683005 0.716945 0.683005 0.13962 14.63357 -92.01093 45.93849 39 'point symmetry operation' ? ? -0.80606 -0.570521 0.157398 0.514544 -0.544149 0.662681 -0.292425 0.615149 0.732175 82.18927 -94.58547 42.81161 40 'point symmetry operation' ? ? 0.07697 -0.812055 -0.578483 0.518966 -0.462779 0.718686 -0.851322 -0.35553 0.385809 105.8491 -100.20956 105.96824 41 'point symmetry operation' ? ? -0.492035 -0.381656 -0.782458 0.564102 0.544806 -0.620463 0.663091 -0.746676 -0.052771 157.24745 29.47315 66.0333 42 'point symmetry operation' ? ? 0.310199 0.098135 -0.945593 -0.041173 0.995111 0.089767 0.94978 0.011087 0.312723 130.11851 -6.54561 15.567 43 'point symmetry operation' ? ? 0.310147 0.867145 -0.389702 -0.888526 0.410187 0.205589 0.338127 0.282498 0.8977 76.64127 27.54359 -8.06111 44 'point symmetry operation' ? ? -0.49212 0.86263 0.116992 -0.806945 -0.40162 -0.433059 -0.326583 -0.307523 0.893741 70.71944 84.63065 27.80222 45 'point symmetry operation' ? ? -0.987896 0.090829 -0.125744 0.090828 -0.318421 -0.943588 -0.125744 -0.943588 0.306317 120.5368 85.82318 73.59508 46 'point symmetry operation' ? ? -0.077056 0.811416 0.579367 -0.645089 -0.483648 0.591562 0.760212 -0.32816 0.560703 2.86024 -24.48046 1.23346 47 'point symmetry operation' ? ? -0.879541 -0.03985 0.474152 -0.03985 -0.986817 -0.156858 0.474152 -0.156858 0.866358 55.81956 15.2142 -12.90239 48 'point symmetry operation' ? ? -0.49212 -0.806945 -0.326583 0.86263 -0.40162 -0.307523 0.116992 -0.433059 0.893741 112.17453 -18.46548 3.5285 49 'point symmetry operation' ? ? 0.549804 -0.42977 -0.716249 0.815154 0.46322 0.347779 0.182316 -0.775064 0.60501 94.0445 -78.97533 27.81919 50 'point symmetry operation' ? ? 0.806328 0.570432 -0.156341 -0.116667 0.412525 0.903445 0.579848 -0.710233 0.399181 26.48455 -82.6928 26.40078 51 'point symmetry operation' ? ? 0.879809 0.436839 -0.18737 0.038873 -0.458997 -0.887587 -0.473735 0.773623 -0.420812 25.36797 83.00983 165.62388 52 'point symmetry operation' ? ? 0.078147 0.804898 0.588244 0.645039 0.409075 -0.645432 -0.760144 0.429879 -0.487222 -6.4579 27.35582 187.30158 53 'point symmetry operation' ? ? -0.805922 0.031516 0.591183 0.117613 0.987201 0.107706 -0.580222 0.156333 -0.799314 40.45129 -16.94651 207.7224 54 'point symmetry operation' ? ? -0.550644 -0.81452 -0.182616 -0.81452 0.47643 0.331016 -0.182616 0.331016 -0.925786 101.26863 11.32716 198.66546 55 'point symmetry operation' ? ? 0.491194 -0.564016 -0.663788 -0.863183 -0.41737 -0.284108 -0.116803 0.712523 -0.691859 91.94663 73.10357 172.64714 56 'point symmetry operation' ? ? -0.310718 -0.8666 0.39046 0.042113 0.397839 0.916488 -0.949569 0.301213 -0.08712 32.10834 -92.62252 158.32536 57 'point symmetry operation' ? ? 0.491194 -0.863183 -0.116803 -0.564016 -0.41737 0.712523 -0.663788 -0.284108 -0.691859 38.10383 -40.64441 201.2498 58 'point symmetry operation' ? ? 0.987895 -0.091716 0.125103 -0.091716 -0.995768 -0.005772 0.125103 -0.005772 -0.992127 -11.68308 3.2484 188.02621 59 'point symmetry operation' ? ? 0.492961 0.38166 0.781873 0.806311 -0.53803 -0.245737 0.326883 0.751571 -0.572964 -48.44857 -21.60247 136.92914 60 'point symmetry operation' ? ? -0.309627 -0.097244 0.945873 0.889022 0.323266 0.324252 -0.3373 0.941298 -0.01364 -21.38398 -80.85396 118.573 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 454 A CYS 490 1_555 A SG CYS 458 A CYS 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc1 A OD2 ASP 369 A ASP 405 1_555 C CA CA . A CA 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc2 A OD1 ASP 369 A ASP 405 1_555 C CA CA . A CA 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1C8G _atom_sites.fract_transf_matrix[1][1] 0.003757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 585 585 CA CA . C 2 CA A 1 586 586 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -28.008 _atom_site.Cartn_y 74.191 _atom_site.Cartn_z 72.423 _atom_site.occupancy 0.97 _atom_site.B_iso_or_equiv 9.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 585 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 1 #