data_1C8H # _model_server_result.job_id mMmN59nOL85sqSaZVpXm9A _model_server_result.datetime_utc '2025-09-06 13:07:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":586}' # _entry.id 1C8H # _exptl.entry_id 1C8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 77.48 _cell.angle_beta 74.91 _cell.angle_gamma 69.27 _cell.entry_id 1C8H _cell.length_a 254.493 _cell.length_b 253.601 _cell.length_c 452.044 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 'complete icosahedral assembly' 60 'complete icosahedral assembly' 1 ? monomeric 1 'icosahedral asymmetric unit' 2 ? pentameric 5 'icosahedral pentamer' 3 ? hexameric 6 'icosahedral 23 hexamer' 4 ? monomeric 1 'icosahedral asymmetric unit, std point frame' 5 ? 120-meric 120 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 (1-60) A,B,C 2 1 A,B,C 3 (1-5) A,B,C 4 (1,2,6,10,23,24) A,B,C 5 P A,B,C 6 (X0,X1)(1-60) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 X1 'transform to crystal frame' ? ? 0.950089 0.309618 -0.038329 -0.305981 0.948753 0.07903 0.060822 -0.063356 0.996138 223.63 154.38 213.72 P 'transform to point frame' ? ? 0.705517 0.658507 0.261948 -0.160726 -0.21132 0.964114 0.690222 -0.7223 -0.043256 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.483597 -0.699055 -0.526751 0.195077 0.67274 -0.713699 0.853273 0.242385 0.461697 0 0 0 3 'point symmetry operation' ? ? -0.351965 -0.936019 0.000981 -0.383406 0.143219 -0.912404 0.853878 -0.321514 -0.409288 0 0 0 4 'point symmetry operation' ? ? -0.351968 -0.383417 0.853887 -0.936004 0.143218 -0.32151 0.000979 -0.912408 -0.409283 0 0 0 5 'point symmetry operation' ? ? 0.483592 0.195075 0.853281 -0.699047 0.672737 0.242386 -0.526747 -0.713701 0.461704 0 0 0 6 'point symmetry operation' ? ? -0.047176 -0.997106 -0.059714 -0.997095 0.043434 0.062488 -0.059704 0.062479 -0.996258 0 0 0 7 'point symmetry operation' ? ? -0.268279 -0.652288 0.708914 -0.4204 0.74139 0.523072 -0.866765 -0.15771 -0.473112 0 0 0 8 'point symmetry operation' ? ? 0.347912 -0.079448 0.934157 0.387647 0.91943 -0.066183 -0.853624 0.385143 0.350692 0 0 0 9 'point symmetry operation' ? ? 0.949842 -0.070232 0.304737 0.310352 0.331509 -0.890946 -0.038442 0.940834 0.336684 0 0 0 10 'point symmetry operation' ? ? 0.705664 -0.637376 -0.309509 -0.545465 -0.209886 -0.811423 0.452228 0.741416 -0.495777 0 0 0 11 'point symmetry operation' ? ? -0.948336 0.067927 -0.309905 0.067929 -0.910688 -0.407473 -0.309916 -0.407471 0.859024 0 0 0 12 'point symmetry operation' ? ? -0.709795 0.63352 0.307975 -0.49249 -0.758908 0.426046 0.503619 0.150741 0.850669 0 0 0 13 'point symmetry operation' ? ? 0.043117 0.997028 0.063934 -0.022678 -0.063003 0.997755 0.998808 -0.044458 0.019886 0 0 0 14 'point symmetry operation' ? ? 0.269901 0.656096 -0.704772 0.8281 0.21531 0.517572 0.491316 -0.72331 -0.485211 0 0 0 15 'point symmetry operation' ? ? -0.34285 0.081879 -0.935817 0.884099 -0.308588 -0.350907 -0.31752 -0.947664 0.033405 0 0 0 16 'point symmetry operation' ? ? -0.004488 0.929179 0.369619 0.929165 -0.132746 0.344985 0.36962 0.344992 -0.862766 0 0 0 17 'point symmetry operation' ? ? 0.494477 0.717823 -0.490139 0.717812 -0.655222 -0.235419 -0.490127 -0.235417 -0.839254 0 0 0 18 'point symmetry operation' ? ? -0.039064 0.018439 -0.999071 0.018437 -0.999646 -0.019169 -0.999062 -0.019171 0.03871 0 0 0 19 'point symmetry operation' ? ? -0.867775 -0.202447 -0.453852 -0.202448 -0.690036 0.694885 -0.453853 0.694885 0.557811 0 0 0 20 'point symmetry operation' ? ? -0.846406 0.360421 0.392045 0.360413 -0.154263 0.919944 0.392039 0.91995 0.000668 0 0 0 21 'point symmetry operation' ? ? 0.262637 -0.761291 0.592842 0.421514 -0.462154 -0.780219 0.867951 0.454806 0.199517 0 0 0 22 'point symmetry operation' ? ? 0.484356 -0.552052 0.678703 -0.552052 -0.794684 -0.252419 0.678703 -0.252419 -0.689672 0 0 0 23 'point symmetry operation' ? ? 0.705659 -0.545471 0.45222 -0.637377 -0.209884 0.741418 -0.3095 -0.811429 -0.495776 0 0 0 24 'point symmetry operation' ? ? 0.620713 -0.750643 0.226385 0.283455 0.484074 0.827843 -0.730996 -0.449692 0.513248 0 0 0 25 'point symmetry operation' ? ? 0.34691 -0.884027 0.313294 0.937886 0.328162 -0.11258 -0.003292 0.332885 0.942962 0 0 0 26 'point symmetry operation' ? ? 0.711294 -0.257903 -0.653878 0.487508 -0.489115 0.72325 -0.506343 -0.833219 -0.222179 0 0 0 27 'point symmetry operation' ? ? -0.264268 -0.829226 -0.492504 0.757472 -0.494537 0.426208 -0.596988 -0.260431 0.758805 0 0 0 28 'point symmetry operation' ? ? -0.709802 -0.492491 0.503633 0.633511 -0.758903 0.150731 0.307962 0.426048 0.850671 0 0 0 29 'point symmetry operation' ? ? -0.009595 0.286946 0.957905 0.286934 -0.916868 0.277518 0.957896 0.277527 -0.073537 0 0 0 30 'point symmetry operation' ? ? 0.868691 0.431929 0.242523 0.1967 -0.75013 0.631355 0.454628 -0.500743 -0.736595 0 0 0 31 'point symmetry operation' ? ? -0.484513 0.469573 0.738079 -0.189329 0.767426 -0.61254 -0.854048 -0.436527 -0.282913 0 0 0 32 'point symmetry operation' ? ? 0.487077 0.833501 0.260853 -0.464516 0.500159 -0.730791 -0.739574 0.234783 0.630799 0 0 0 33 'point symmetry operation' ? ? 0.620724 0.283463 -0.731002 -0.750633 0.484066 -0.449683 0.226389 0.827847 0.513244 0 0 0 34 'point symmetry operation' ? ? -0.268267 -0.420408 -0.866775 -0.652276 0.741388 -0.157698 0.708912 0.52307 -0.473121 0 0 0 35 'point symmetry operation' ? ? -0.951341 -0.305385 0.041167 -0.305371 0.916514 -0.25835 0.041166 -0.258356 -0.965173 0 0 0 36 'point symmetry operation' ? ? -0.489418 0.549621 -0.677042 -0.719694 0.183843 0.669509 0.492441 0.81494 0.305575 0 0 0 37 'point symmetry operation' ? ? -0.707165 0.547777 -0.447051 0.259096 0.789063 0.557001 0.657858 0.278066 -0.699932 0 0 0 38 'point symmetry operation' ? ? -0.616581 0.754499 -0.224851 0.7545 0.484721 -0.442466 -0.224851 -0.442466 -0.868139 0 0 0 39 'point symmetry operation' ? ? -0.342851 0.884105 -0.317514 0.081887 -0.308593 -0.947663 -0.935812 -0.350905 0.03341 0 0 0 40 'point symmetry operation' ? ? -0.264259 0.757483 -0.596984 -0.829215 -0.494546 -0.260425 -0.492501 0.426214 0.758806 0 0 0 41 'point symmetry operation' ? ? 0.262641 0.421519 0.867958 -0.761291 -0.462157 0.454805 0.592834 -0.780212 0.199517 0 0 0 42 'point symmetry operation' ? ? 0.949846 0.310353 -0.03845 -0.070241 0.331511 0.940834 0.304734 -0.890943 0.336677 0 0 0 43 'point symmetry operation' ? ? 0.487077 -0.464528 -0.739582 0.83349 0.500167 0.234781 0.260843 -0.730793 0.63079 0 0 0 44 'point symmetry operation' ? ? -0.486135 -0.832264 -0.266498 0.700976 -0.189266 -0.687612 0.521818 -0.521083 0.675401 0 0 0 45 'point symmetry operation' ? ? -0.624845 -0.284657 0.727017 -0.284652 -0.784014 -0.55163 0.727 -0.551626 0.408859 0 0 0 46 'point symmetry operation' ? ? -0.484505 -0.189343 -0.854054 0.469575 0.76743 -0.436523 0.738066 -0.612541 -0.282924 0 0 0 47 'point symmetry operation' ? ? -0.999983 0.004308 -0.003967 0.004319 0.082215 -0.996605 -0.003978 -0.996606 -0.082232 0 0 0 48 'point symmetry operation' ? ? -0.486133 0.700979 0.521836 -0.832249 -0.189273 -0.521082 -0.266505 -0.687607 0.675406 0 0 0 49 'point symmetry operation' ? ? 0.346921 0.937896 -0.003287 -0.884021 0.328154 0.332889 0.313288 -0.112571 0.942959 0 0 0 50 'point symmetry operation' ? ? 0.347927 0.387646 -0.853634 -0.079449 0.919429 0.385149 0.934147 -0.066177 0.350679 0 0 0 51 'point symmetry operation' ? ? -0.489432 -0.719699 0.492445 0.549614 0.183849 0.814933 -0.677039 0.669502 0.305583 0 0 0 52 'point symmetry operation' ? ? 0.043106 -0.022669 0.998818 0.997017 -0.063 -0.04447 0.063936 0.997756 0.019894 0 0 0 53 'point symmetry operation' ? ? 0.868688 0.196715 0.454624 0.431919 -0.750131 -0.500748 0.242534 0.631358 -0.736591 0 0 0 54 'point symmetry operation' ? ? 0.846388 -0.364729 -0.388078 -0.364733 -0.927952 0.07666 -0.388061 0.076656 -0.918436 0 0 0 55 'point symmetry operation' ? ? 0.007024 -0.931104 -0.364704 -0.291993 -0.350721 0.889796 -0.956388 0.100231 -0.274337 0 0 0 56 'point symmetry operation' ? ? 0.711297 0.487523 -0.50635 -0.257899 -0.489122 -0.833215 -0.653861 0.723251 -0.222175 0 0 0 57 'point symmetry operation' ? ? 0.007031 -0.291991 -0.956401 -0.931095 -0.350725 0.100241 -0.364692 0.889793 -0.27434 0 0 0 58 'point symmetry operation' ? ? -0.869632 -0.433167 -0.236878 -0.43316 0.439237 0.787048 -0.236872 0.787043 -0.569605 0 0 0 59 'point symmetry operation' ? ? -0.707174 0.259097 0.657864 0.547777 0.789064 0.278062 -0.447045 0.556998 -0.699924 0 0 0 60 'point symmetry operation' ? ? 0.269894 0.828114 0.491321 0.656095 0.215306 -0.723315 -0.704759 0.517573 -0.485201 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 490 A CYS 490 1_555 A SG CYS 494 A CYS 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A OD2 ASP 405 A ASP 405 1_555 C CA CA . A CA 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? metalc ? metalc2 A OD1 ASP 405 A ASP 405 1_555 C CA CA . A CA 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1C8H _atom_sites.fract_transf_matrix[1][1] 0.003929 _atom_sites.fract_transf_matrix[1][2] -0.001487 _atom_sites.fract_transf_matrix[1][3] -0.000862 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004216 _atom_sites.fract_transf_matrix[2][3] -0.000588 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 585 585 CA CA . C 2 CA A 1 586 586 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 89.196 _atom_site.Cartn_y -69.613 _atom_site.Cartn_z -5.609 _atom_site.occupancy 1.24 _atom_site.B_iso_or_equiv 40 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 586 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #