data_1C8R
#
_model_server_result.job_id            tyUBWiDaQ_qfDBofBuPvig 
_model_server_result.datetime_utc      '2024-12-26 11:00:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1c8r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":701}' 
#
_entry.id    1C8R 
#
_exptl.entry_id    1C8R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              380.734 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,10,23-TRIMETHYL-TETRACOSANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1C8R 
_cell.length_a            60.631 
_cell.length_b            60.631 
_cell.length_c            108.156 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1C8R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 90.9465 52.507986 0 
3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 105.015973 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             O 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             216 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            P 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.329 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C27 H56' 
_chem_comp.formula_weight    380.734 
_chem_comp.id                SQU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,10,23-TRIMETHYL-TETRACOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SQU sing 435 n n 
C1 H11 SQU sing 436 n n 
C1 H12A SQU sing 437 n n 
C1 H13 SQU sing 438 n n 
C2 C3 SQU sing 439 n n 
C2 C4 SQU sing 440 n n 
C2 H2 SQU sing 441 n n 
C3 H31 SQU sing 442 n n 
C3 H32 SQU sing 443 n n 
C3 H33 SQU sing 444 n n 
C4 C5 SQU sing 445 n n 
C4 H41 SQU sing 446 n n 
C4 H42 SQU sing 447 n n 
C5 C6 SQU sing 448 n n 
C5 H51 SQU sing 449 n n 
C5 H52 SQU sing 450 n n 
C6 C7 SQU sing 451 n n 
C6 H61 SQU sing 452 n n 
C6 H62 SQU sing 453 n n 
C7 C9 SQU sing 454 n n 
C7 H71 SQU sing 455 n n 
C7 H72 SQU sing 456 n n 
C9 C10 SQU sing 457 n n 
C9 H91 SQU sing 458 n n 
C9 H92 SQU sing 459 n n 
C10 C11 SQU sing 460 n n 
C10 H101 SQU sing 461 n n 
C10 H102 SQU sing 462 n n 
C11 C12 SQU sing 463 n n 
C11 H111 SQU sing 464 n n 
C11 H112 SQU sing 465 n n 
C12 C13 SQU sing 466 n n 
C12 C14 SQU sing 467 n n 
C12 H12 SQU sing 468 n n 
C13 H131 SQU sing 469 n n 
C13 H132 SQU sing 470 n n 
C13 H133 SQU sing 471 n n 
C14 C15 SQU sing 472 n n 
C14 H141 SQU sing 473 n n 
C14 H142 SQU sing 474 n n 
C15 C16 SQU sing 475 n n 
C15 H151 SQU sing 476 n n 
C15 H152 SQU sing 477 n n 
C16 C17 SQU sing 478 n n 
C16 H161 SQU sing 479 n n 
C16 H162 SQU sing 480 n n 
C17 C18 SQU sing 481 n n 
C17 H171 SQU sing 482 n n 
C17 H172 SQU sing 483 n n 
C18 C20 SQU sing 484 n n 
C18 H181 SQU sing 485 n n 
C18 H182 SQU sing 486 n n 
C20 C21 SQU sing 487 n n 
C20 H201 SQU sing 488 n n 
C20 H202 SQU sing 489 n n 
C21 C22 SQU sing 490 n n 
C21 H211 SQU sing 491 n n 
C21 H212 SQU sing 492 n n 
C22 C23 SQU sing 493 n n 
C22 H221 SQU sing 494 n n 
C22 H222 SQU sing 495 n n 
C23 C25 SQU sing 496 n n 
C23 H231 SQU sing 497 n n 
C23 H232 SQU sing 498 n n 
C25 C26 SQU sing 499 n n 
C25 H251 SQU sing 500 n n 
C25 H252 SQU sing 501 n n 
C26 C27 SQU sing 502 n n 
C26 H261 SQU sing 503 n n 
C26 H262 SQU sing 504 n n 
C27 C28 SQU sing 505 n n 
C27 H271 SQU sing 506 n n 
C27 H272 SQU sing 507 n n 
C28 C29 SQU sing 508 n n 
C28 C30 SQU sing 509 n n 
C28 H28 SQU sing 510 n n 
C29 H291 SQU sing 511 n n 
C29 H292 SQU sing 512 n n 
C29 H293 SQU sing 513 n n 
C30 H301 SQU sing 514 n n 
C30 H302 SQU sing 515 n n 
C30 H303 SQU sing 516 n n 
#
_atom_sites.entry_id                     1C8R 
_atom_sites.fract_transf_matrix[1][1]    0.016493 
_atom_sites.fract_transf_matrix[1][2]    0.009522 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019045 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009246 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LI1 A 1 601 601 LI1 LI1 . 
C 2 LI1 A 1 602 602 LI1 LI1 . 
D 2 LI1 A 1 603 603 LI1 LI1 . 
E 2 LI1 A 1 604 604 LI1 LI1 . 
F 2 LI1 A 1 605 605 LI1 LI1 . 
G 2 LI1 A 1 606 606 LI1 LI1 . 
H 2 LI1 A 1 607 607 LI1 LI1 . 
I 2 LI1 A 1 608 608 LI1 LI1 . 
J 2 LI1 A 1 609 609 LI1 LI1 . 
K 2 LI1 A 1 610 610 LI1 LI1 . 
L 2 LI1 A 1 611 611 LI1 LI1 . 
M 2 LI1 A 1 612 612 LI1 LI1 . 
N 2 LI1 A 1 613 613 LI1 LI1 . 
O 3 SQU A 1 701 701 SQU SQU . 
P 4 RET A 1 301 301 RET RET . 
Q 5 HOH A 1 401 401 HOH HOH . 
Q 5 HOH A 2 402 402 HOH HOH . 
Q 5 HOH A 3 403 403 HOH HOH . 
Q 5 HOH A 4 404 404 HOH HOH . 
Q 5 HOH A 5 405 405 HOH HOH . 
Q 5 HOH A 6 406 406 HOH HOH . 
Q 5 HOH A 7 407 407 HOH HOH . 
Q 5 HOH A 8 411 411 HOH HOH . 
Q 5 HOH A 9 412 412 HOH HOH . 
Q 5 HOH A 10 413 413 HOH HOH . 
Q 5 HOH A 11 414 414 HOH HOH . 
Q 5 HOH A 12 415 415 HOH HOH . 
Q 5 HOH A 13 416 416 HOH HOH . 
Q 5 HOH A 14 417 417 HOH HOH . 
Q 5 HOH A 15 418 418 HOH HOH . 
Q 5 HOH A 16 419 419 HOH HOH . 
Q 5 HOH A 17 420 420 HOH HOH . 
Q 5 HOH A 18 501 501 HOH HOH . 
Q 5 HOH A 19 502 502 HOH HOH . 
Q 5 HOH A 20 503 503 HOH HOH . 
Q 5 HOH A 21 504 504 HOH HOH . 
Q 5 HOH A 22 511 511 HOH HOH . 
Q 5 HOH A 23 512 512 HOH HOH . 
Q 5 HOH A 24 513 513 HOH HOH . 
Q 5 HOH A 25 514 514 HOH HOH . 
Q 5 HOH A 26 521 521 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SQU . . . O 3 31.209 28.655 6.061 1 69.49 ? C1 SQU 701 A 1 
HETATM 2 C C2 SQU . . . O 3 31.419 28.482 4.563 1 70.01 ? C2 SQU 701 A 1 
HETATM 3 C C3 SQU . . . O 3 30.982 27.147 3.976 1 73.35 ? C3 SQU 701 A 1 
HETATM 4 C C4 SQU . . . O 3 32.234 29.278 3.844 1 68.07 ? C4 SQU 701 A 1 
HETATM 5 C C5 SQU . . . O 3 32.02 30.745 3.496 1 65.89 ? C5 SQU 701 A 1 
HETATM 6 C C6 SQU . . . O 3 30.963 30.97 2.388 1 63.43 ? C6 SQU 701 A 1 
HETATM 7 C C7 SQU . . . O 3 29.596 31.466 2.853 1 61.06 ? C7 SQU 701 A 1 
HETATM 8 C C9 SQU . . . O 3 29.149 31.611 4.111 1 58.44 ? C9 SQU 701 A 1 
HETATM 9 C C10 SQU . . . O 3 29.435 32.744 5.088 1 56.31 ? C10 SQU 701 A 1 
HETATM 10 C C11 SQU . . . O 3 29.225 32.359 6.574 1 55.24 ? C11 SQU 701 A 1 
HETATM 11 C C12 SQU . . . O 3 29.303 33.519 7.568 1 53.81 ? C12 SQU 701 A 1 
HETATM 12 C C13 SQU . . . O 3 29.735 34.875 7.043 1 57.21 ? C13 SQU 701 A 1 
HETATM 13 C C14 SQU . . . O 3 29.017 33.412 8.88 1 52.41 ? C14 SQU 701 A 1 
HETATM 14 C C15 SQU . . . O 3 28.466 32.158 9.553 1 51.88 ? C15 SQU 701 A 1 
HETATM 15 C C16 SQU . . . O 3 29.472 30.983 9.589 1 50.99 ? C16 SQU 701 A 1 
HETATM 16 C C17 SQU . . . O 3 28.81 29.617 9.713 1 50.78 ? C17 SQU 701 A 1 
HETATM 17 C C18 SQU . . . O 3 28.103 28.958 8.778 1 51.14 ? C18 SQU 701 A 1 
HETATM 18 C C20 SQU . . . O 3 28.637 27.799 7.938 1 51.97 ? C20 SQU 701 A 1 
HETATM 19 C C21 SQU . . . O 3 27.522 27.09 7.139 1 52.45 ? C21 SQU 701 A 1 
HETATM 20 C C22 SQU . . . O 3 26.374 26.611 8.013 1 53.12 ? C22 SQU 701 A 1 
HETATM 21 C C23 SQU . . . O 3 26.285 25.441 8.666 1 53.4 ? C23 SQU 701 A 1 
HETATM 22 C C25 SQU . . . O 3 26.389 25.236 10.179 1 52.92 ? C25 SQU 701 A 1 
HETATM 23 C C26 SQU . . . O 3 27.795 24.855 10.702 1 52.52 ? C26 SQU 701 A 1 
HETATM 24 C C27 SQU . . . O 3 28.443 25.918 11.59 1 51.7 ? C27 SQU 701 A 1 
HETATM 25 C C28 SQU . . . O 3 29.028 25.689 12.785 1 51.56 ? C28 SQU 701 A 1 
HETATM 26 C C29 SQU . . . O 3 29.689 26.834 13.527 1 50.36 ? C29 SQU 701 A 1 
HETATM 27 C C30 SQU . . . O 3 29.405 24.297 13.272 1 51.12 ? C30 SQU 701 A 1 
#
_model_server_stats.io_time_ms              89 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           27 
#