data_1C9C # _model_server_result.job_id I-GvjJ48IXF_Cx-zLelH9Q _model_server_result.datetime_utc '2025-03-05 01:30:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":413}' # _entry.id 1C9C # _exptl.entry_id 1C9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ALANYL-PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1C9C _cell.length_a 156.98 _cell.length_b 87.27 _cell.length_c 79.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H17 N2 O7 P' _chem_comp.formula_weight 320.236 _chem_comp.id PP3 _chem_comp.mon_nstd_flag . _chem_comp.name "ALANYL-PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PYRIDOXYL-ALANINE-5-PHOSPHATE;VITAMIN B6 COMPLEXED WITH ALANINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PP3 doub 260 n y N1 C6 PP3 sing 261 n y C2 C2A PP3 sing 262 n n C2 C3 PP3 sing 263 n y C2A H2A1 PP3 sing 264 n n C2A H2A2 PP3 sing 265 n n C2A H2A3 PP3 sing 266 n n C3 O3 PP3 sing 267 n n C3 C4 PP3 doub 268 n y O3 HO3 PP3 sing 269 n n C4 C4A PP3 sing 270 n n C4 C5 PP3 sing 271 n y C4A N PP3 sing 272 n n C4A H4A1 PP3 sing 273 n n C4A H4A2 PP3 sing 274 n n C5 C6 PP3 doub 275 n y C5 C5A PP3 sing 276 n n C6 H6 PP3 sing 277 n n C5A O4P PP3 sing 278 n n C5A H5A1 PP3 sing 279 n n C5A H5A2 PP3 sing 280 n n O4P P PP3 sing 281 n n P O1P PP3 doub 282 n n P O2P PP3 sing 283 n n P O3P PP3 sing 284 n n O2P HOP2 PP3 sing 285 n n O3P HOP3 PP3 sing 286 n n N CA PP3 sing 287 n n N HN2 PP3 sing 288 n n CA C PP3 sing 289 n n CA CB PP3 sing 290 n n CA HA PP3 sing 291 n n C O PP3 doub 292 n n C OXT PP3 sing 293 n n CB HB1 PP3 sing 294 n n CB HB2 PP3 sing 295 n n CB HB3 PP3 sing 296 n n OXT HXT PP3 sing 297 n n # _atom_sites.entry_id 1C9C _atom_sites.fract_transf_matrix[1][1] 0.00637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PP3 A 1 413 413 PP3 PP3 . C 3 HOH A 1 1001 1001 HOH WAT . C 3 HOH A 2 1002 1002 HOH WAT . C 3 HOH A 3 1003 1003 HOH WAT . C 3 HOH A 4 1004 1004 HOH WAT . C 3 HOH A 5 1005 1005 HOH WAT . C 3 HOH A 6 1007 1007 HOH WAT . C 3 HOH A 7 1008 1008 HOH WAT . C 3 HOH A 8 1009 1009 HOH WAT . C 3 HOH A 9 1010 1010 HOH WAT . C 3 HOH A 10 1011 1011 HOH WAT . C 3 HOH A 11 1012 1012 HOH WAT . C 3 HOH A 12 1013 1013 HOH WAT . C 3 HOH A 13 1014 1014 HOH WAT . C 3 HOH A 14 1015 1015 HOH WAT . C 3 HOH A 15 1016 1016 HOH WAT . C 3 HOH A 16 1017 1017 HOH WAT . C 3 HOH A 17 1018 1018 HOH WAT . C 3 HOH A 18 1019 1019 HOH WAT . C 3 HOH A 19 1020 1020 HOH WAT . C 3 HOH A 20 1021 1021 HOH WAT . C 3 HOH A 21 1022 1022 HOH WAT . C 3 HOH A 22 1023 1023 HOH WAT . C 3 HOH A 23 1024 1024 HOH WAT . C 3 HOH A 24 1025 1025 HOH WAT . C 3 HOH A 25 1026 1026 HOH WAT . C 3 HOH A 26 1027 1027 HOH WAT . C 3 HOH A 27 1028 1028 HOH WAT . C 3 HOH A 28 1029 1029 HOH WAT . C 3 HOH A 29 1030 1030 HOH WAT . C 3 HOH A 30 1031 1031 HOH WAT . C 3 HOH A 31 1032 1032 HOH WAT . C 3 HOH A 32 1033 1033 HOH WAT . C 3 HOH A 33 1034 1034 HOH WAT . C 3 HOH A 34 1035 1035 HOH WAT . C 3 HOH A 35 1036 1036 HOH WAT . C 3 HOH A 36 1037 1037 HOH WAT . C 3 HOH A 37 1038 1038 HOH WAT . C 3 HOH A 38 1039 1039 HOH WAT . C 3 HOH A 39 1040 1040 HOH WAT . C 3 HOH A 40 1041 1041 HOH WAT . C 3 HOH A 41 1042 1042 HOH WAT . C 3 HOH A 42 1043 1043 HOH WAT . C 3 HOH A 43 1044 1044 HOH WAT . C 3 HOH A 44 1045 1045 HOH WAT . C 3 HOH A 45 1046 1046 HOH WAT . C 3 HOH A 46 1047 1047 HOH WAT . C 3 HOH A 47 1048 1048 HOH WAT . C 3 HOH A 48 1049 1049 HOH WAT . C 3 HOH A 49 1050 1050 HOH WAT . C 3 HOH A 50 1051 1051 HOH WAT . C 3 HOH A 51 1052 1052 HOH WAT . C 3 HOH A 52 1053 1053 HOH WAT . C 3 HOH A 53 1054 1054 HOH WAT . C 3 HOH A 54 1055 1055 HOH WAT . C 3 HOH A 55 1056 1056 HOH WAT . C 3 HOH A 56 1057 1057 HOH WAT . C 3 HOH A 57 1058 1058 HOH WAT . C 3 HOH A 58 1059 1059 HOH WAT . C 3 HOH A 59 1060 1060 HOH WAT . C 3 HOH A 60 1061 1061 HOH WAT . C 3 HOH A 61 1062 1062 HOH WAT . C 3 HOH A 62 1063 1063 HOH WAT . C 3 HOH A 63 1064 1064 HOH WAT . C 3 HOH A 64 1065 1065 HOH WAT . C 3 HOH A 65 1066 1066 HOH WAT . C 3 HOH A 66 1067 1067 HOH WAT . C 3 HOH A 67 1068 1068 HOH WAT . C 3 HOH A 68 1069 1069 HOH WAT . C 3 HOH A 69 1070 1070 HOH WAT . C 3 HOH A 70 1071 1071 HOH WAT . C 3 HOH A 71 1072 1072 HOH WAT . C 3 HOH A 72 1073 1073 HOH WAT . C 3 HOH A 73 1074 1074 HOH WAT . C 3 HOH A 74 1075 1075 HOH WAT . C 3 HOH A 75 1076 1076 HOH WAT . C 3 HOH A 76 1077 1077 HOH WAT . C 3 HOH A 77 1078 1078 HOH WAT . C 3 HOH A 78 1079 1079 HOH WAT . C 3 HOH A 79 1080 1080 HOH WAT . C 3 HOH A 80 1081 1081 HOH WAT . C 3 HOH A 81 1082 1082 HOH WAT . C 3 HOH A 82 1083 1083 HOH WAT . C 3 HOH A 83 1084 1084 HOH WAT . C 3 HOH A 84 1085 1085 HOH WAT . C 3 HOH A 85 1086 1086 HOH WAT . C 3 HOH A 86 1087 1087 HOH WAT . C 3 HOH A 87 1088 1088 HOH WAT . C 3 HOH A 88 1089 1089 HOH WAT . C 3 HOH A 89 1090 1090 HOH WAT . C 3 HOH A 90 1091 1091 HOH WAT . C 3 HOH A 91 1092 1092 HOH WAT . C 3 HOH A 92 1093 1093 HOH WAT . C 3 HOH A 93 1094 1094 HOH WAT . C 3 HOH A 94 1095 1095 HOH WAT . C 3 HOH A 95 1096 1096 HOH WAT . C 3 HOH A 96 1097 1097 HOH WAT . C 3 HOH A 97 1098 1098 HOH WAT . C 3 HOH A 98 1099 1099 HOH WAT . C 3 HOH A 99 1100 1100 HOH WAT . C 3 HOH A 100 1101 1101 HOH WAT . C 3 HOH A 101 1102 1102 HOH WAT . C 3 HOH A 102 1103 1103 HOH WAT . C 3 HOH A 103 1104 1104 HOH WAT . C 3 HOH A 104 1105 1105 HOH WAT . C 3 HOH A 105 1106 1106 HOH WAT . C 3 HOH A 106 1107 1107 HOH WAT . C 3 HOH A 107 1108 1108 HOH WAT . C 3 HOH A 108 1109 1109 HOH WAT . C 3 HOH A 109 1110 1110 HOH WAT . C 3 HOH A 110 1111 1111 HOH WAT . C 3 HOH A 111 1112 1112 HOH WAT . C 3 HOH A 112 1113 1113 HOH WAT . C 3 HOH A 113 1114 1114 HOH WAT . C 3 HOH A 114 1115 1115 HOH WAT . C 3 HOH A 115 1116 1116 HOH WAT . C 3 HOH A 116 1117 1117 HOH WAT . C 3 HOH A 117 1119 1119 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PP3 . . . B 2 26.646 5.032 -14.758 1 16.24 ? N1 PP3 413 A 1 HETATM 2 C C2 PP3 . . . B 2 26.364 6.22 -15.382 1 13.31 ? C2 PP3 413 A 1 HETATM 3 C C2A PP3 . . . B 2 27.111 6.282 -16.701 1 14.43 ? C2A PP3 413 A 1 HETATM 4 C C3 PP3 . . . B 2 25.484 7.131 -14.73 1 13.66 ? C3 PP3 413 A 1 HETATM 5 O O3 PP3 . . . B 2 25.317 8.246 -15.485 1 15.61 ? O3 PP3 413 A 1 HETATM 6 C C4 PP3 . . . B 2 24.884 6.877 -13.485 1 16.45 ? C4 PP3 413 A 1 HETATM 7 C C4A PP3 . . . B 2 23.935 7.874 -12.817 1 19.44 ? C4A PP3 413 A 1 HETATM 8 C C5 PP3 . . . B 2 25.265 5.598 -12.957 1 14.63 ? C5 PP3 413 A 1 HETATM 9 C C6 PP3 . . . B 2 26.12 4.699 -13.554 1 14.2 ? C6 PP3 413 A 1 HETATM 10 C C5A PP3 . . . B 2 24.763 5.065 -11.613 1 14.71 ? C5A PP3 413 A 1 HETATM 11 O O4P PP3 . . . B 2 23.541 5.504 -11.158 1 11.17 ? O4P PP3 413 A 1 HETATM 12 P P PP3 . . . B 2 22.736 4.817 -9.969 1 9.8 ? P PP3 413 A 1 HETATM 13 O O1P PP3 . . . B 2 22.163 3.559 -10.35 1 8.36 ? O1P PP3 413 A 1 HETATM 14 O O2P PP3 . . . B 2 21.924 5.931 -9.394 1 8.99 ? O2P PP3 413 A 1 HETATM 15 O O3P PP3 . . . B 2 23.783 4.408 -8.973 1 10.35 ? O3P PP3 413 A 1 HETATM 16 N N PP3 . . . B 2 24.369 9.207 -13.395 1 23.91 ? N PP3 413 A 1 HETATM 17 C CA PP3 . . . B 2 23.467 10.303 -12.927 1 25.87 ? CA PP3 413 A 1 HETATM 18 C C PP3 . . . B 2 23.934 11.66 -13.515 1 28.42 ? C PP3 413 A 1 HETATM 19 O O PP3 . . . B 2 24.658 11.488 -14.659 1 30.45 ? O PP3 413 A 1 HETATM 20 C CB PP3 . . . B 2 23.449 10.318 -11.406 1 27.77 ? CB PP3 413 A 1 HETATM 21 O OXT PP3 . . . B 2 23.679 12.836 -12.982 1 32.08 ? OXT PP3 413 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 904 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #