data_1C9Y # _model_server_result.job_id lcNnAWegDd_TSOm99gT0_Q _model_server_result.datetime_utc '2024-12-02 06:19:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1c9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":355}' # _entry.id 1C9Y # _exptl.entry_id 1C9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NORVALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1C9Y _cell.length_a 125.41 _cell.length_b 125.41 _cell.length_c 125.41 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C9Y _symmetry.cell_setting cubic _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id NVA _chem_comp.mon_nstd_flag n _chem_comp.name NORVALINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA NVA sing 248 n n N H NVA sing 249 n n N H2 NVA sing 250 n n CA CB NVA sing 251 n n CA C NVA sing 252 n n CA HA NVA sing 253 n n CB CG NVA sing 254 n n CB HB2 NVA sing 255 n n CB HB3 NVA sing 256 n n CG CD NVA sing 257 n n CG HG2 NVA sing 258 n n CG HG3 NVA sing 259 n n CD HD1 NVA sing 260 n n CD HD2 NVA sing 261 n n CD HD3 NVA sing 262 n n C O NVA doub 263 n n C OXT NVA sing 264 n n OXT HXT NVA sing 265 n n # _atom_sites.entry_id 1C9Y _atom_sites.fract_transf_matrix[1][1] 0.007974 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NVA A 1 355 355 NVA 2PI . C 3 CP A 1 356 356 CP CP . D 4 HOH A 1 358 358 HOH HOH . D 4 HOH A 2 359 359 HOH HOH . D 4 HOH A 3 360 360 HOH HOH . D 4 HOH A 4 361 361 HOH HOH . D 4 HOH A 5 362 362 HOH HOH . D 4 HOH A 6 363 363 HOH HOH . D 4 HOH A 7 364 364 HOH HOH . D 4 HOH A 8 365 365 HOH HOH . D 4 HOH A 9 366 366 HOH HOH . D 4 HOH A 10 367 367 HOH HOH . D 4 HOH A 11 368 368 HOH HOH . D 4 HOH A 12 369 369 HOH HOH . D 4 HOH A 13 370 370 HOH HOH . D 4 HOH A 14 371 371 HOH HOH . D 4 HOH A 15 372 372 HOH HOH . D 4 HOH A 16 373 373 HOH HOH . D 4 HOH A 17 374 374 HOH HOH . D 4 HOH A 18 375 375 HOH HOH . D 4 HOH A 19 376 376 HOH HOH . D 4 HOH A 20 377 377 HOH HOH . D 4 HOH A 21 378 378 HOH HOH . D 4 HOH A 22 379 379 HOH HOH . D 4 HOH A 23 380 380 HOH HOH . D 4 HOH A 24 381 381 HOH HOH . D 4 HOH A 25 382 382 HOH HOH . D 4 HOH A 26 383 383 HOH HOH . D 4 HOH A 27 384 384 HOH HOH . D 4 HOH A 28 385 385 HOH HOH . D 4 HOH A 29 386 386 HOH HOH . D 4 HOH A 30 387 387 HOH HOH . D 4 HOH A 31 388 388 HOH HOH . D 4 HOH A 32 389 389 HOH HOH . D 4 HOH A 33 390 390 HOH HOH . D 4 HOH A 34 391 391 HOH HOH . D 4 HOH A 35 392 392 HOH HOH . D 4 HOH A 36 393 393 HOH HOH . D 4 HOH A 37 394 394 HOH HOH . D 4 HOH A 38 395 395 HOH HOH . D 4 HOH A 39 396 396 HOH HOH . D 4 HOH A 40 397 397 HOH HOH . D 4 HOH A 41 398 398 HOH HOH . D 4 HOH A 42 399 399 HOH HOH . D 4 HOH A 43 400 400 HOH HOH . D 4 HOH A 44 401 401 HOH HOH . D 4 HOH A 45 402 402 HOH HOH . D 4 HOH A 46 403 403 HOH HOH . D 4 HOH A 47 404 404 HOH HOH . D 4 HOH A 48 405 405 HOH HOH . D 4 HOH A 49 406 406 HOH HOH . D 4 HOH A 50 407 407 HOH HOH . D 4 HOH A 51 408 408 HOH HOH . D 4 HOH A 52 409 409 HOH HOH . D 4 HOH A 53 410 410 HOH HOH . D 4 HOH A 54 411 411 HOH HOH . D 4 HOH A 55 412 412 HOH HOH . D 4 HOH A 56 413 413 HOH HOH . D 4 HOH A 57 414 414 HOH HOH . D 4 HOH A 58 415 415 HOH HOH . D 4 HOH A 59 416 416 HOH HOH . D 4 HOH A 60 417 417 HOH HOH . D 4 HOH A 61 418 418 HOH HOH . D 4 HOH A 62 419 419 HOH HOH . D 4 HOH A 63 420 420 HOH HOH . D 4 HOH A 64 421 421 HOH HOH . D 4 HOH A 65 422 422 HOH HOH . D 4 HOH A 66 423 423 HOH HOH . D 4 HOH A 67 424 424 HOH HOH . D 4 HOH A 68 425 425 HOH HOH . D 4 HOH A 69 426 426 HOH HOH . D 4 HOH A 70 427 427 HOH HOH . D 4 HOH A 71 428 428 HOH HOH . D 4 HOH A 72 429 429 HOH HOH . D 4 HOH A 73 430 430 HOH HOH . D 4 HOH A 74 431 431 HOH HOH . D 4 HOH A 75 432 432 HOH HOH . D 4 HOH A 76 433 433 HOH HOH . D 4 HOH A 77 434 434 HOH HOH . D 4 HOH A 78 435 435 HOH HOH . D 4 HOH A 79 436 436 HOH HOH . D 4 HOH A 80 437 437 HOH HOH . D 4 HOH A 81 438 438 HOH HOH . D 4 HOH A 82 439 439 HOH HOH . D 4 HOH A 83 440 440 HOH HOH . D 4 HOH A 84 441 441 HOH HOH . D 4 HOH A 85 442 442 HOH HOH . D 4 HOH A 86 443 443 HOH HOH . D 4 HOH A 87 444 444 HOH HOH . D 4 HOH A 88 445 445 HOH HOH . D 4 HOH A 89 446 446 HOH HOH . D 4 HOH A 90 447 447 HOH HOH . D 4 HOH A 91 448 448 HOH HOH . D 4 HOH A 92 449 449 HOH HOH . D 4 HOH A 93 450 450 HOH HOH . D 4 HOH A 94 451 451 HOH HOH . D 4 HOH A 95 452 452 HOH HOH . D 4 HOH A 96 453 453 HOH HOH . D 4 HOH A 97 454 454 HOH HOH . D 4 HOH A 98 455 455 HOH HOH . D 4 HOH A 99 456 456 HOH HOH . D 4 HOH A 100 457 457 HOH HOH . D 4 HOH A 101 458 458 HOH HOH . D 4 HOH A 102 459 459 HOH HOH . D 4 HOH A 103 460 460 HOH HOH . D 4 HOH A 104 461 461 HOH HOH . D 4 HOH A 105 462 462 HOH HOH . D 4 HOH A 106 463 463 HOH HOH . D 4 HOH A 107 464 464 HOH HOH . D 4 HOH A 108 465 465 HOH HOH . D 4 HOH A 109 466 466 HOH HOH . D 4 HOH A 110 467 467 HOH HOH . D 4 HOH A 111 468 468 HOH HOH . D 4 HOH A 112 469 469 HOH HOH . D 4 HOH A 113 470 470 HOH HOH . D 4 HOH A 114 471 471 HOH HOH . D 4 HOH A 115 472 472 HOH HOH . D 4 HOH A 116 473 473 HOH HOH . D 4 HOH A 117 474 474 HOH HOH . D 4 HOH A 118 475 475 HOH HOH . D 4 HOH A 119 476 476 HOH HOH . D 4 HOH A 120 477 477 HOH HOH . D 4 HOH A 121 478 478 HOH HOH . D 4 HOH A 122 479 479 HOH HOH . D 4 HOH A 123 480 480 HOH HOH . D 4 HOH A 124 481 481 HOH HOH . D 4 HOH A 125 482 482 HOH HOH . D 4 HOH A 126 483 483 HOH HOH . D 4 HOH A 127 484 484 HOH HOH . D 4 HOH A 128 485 485 HOH HOH . D 4 HOH A 129 486 486 HOH HOH . D 4 HOH A 130 487 487 HOH HOH . D 4 HOH A 131 488 488 HOH HOH . D 4 HOH A 132 489 489 HOH HOH . D 4 HOH A 133 490 490 HOH HOH . D 4 HOH A 134 491 491 HOH HOH . D 4 HOH A 135 492 492 HOH HOH . D 4 HOH A 136 493 493 HOH HOH . D 4 HOH A 137 494 494 HOH HOH . D 4 HOH A 138 495 495 HOH HOH . D 4 HOH A 139 496 496 HOH HOH . D 4 HOH A 140 497 497 HOH HOH . D 4 HOH A 141 498 498 HOH HOH . D 4 HOH A 142 499 499 HOH HOH . D 4 HOH A 143 500 500 HOH HOH . D 4 HOH A 144 501 501 HOH HOH . D 4 HOH A 145 502 502 HOH HOH . D 4 HOH A 146 503 503 HOH HOH . D 4 HOH A 147 504 504 HOH HOH . D 4 HOH A 148 505 505 HOH HOH . D 4 HOH A 149 506 506 HOH HOH . D 4 HOH A 150 507 507 HOH HOH . D 4 HOH A 151 508 508 HOH HOH . D 4 HOH A 152 509 509 HOH HOH . D 4 HOH A 153 510 510 HOH HOH . D 4 HOH A 154 511 511 HOH HOH . D 4 HOH A 155 512 512 HOH HOH . D 4 HOH A 156 513 513 HOH HOH . D 4 HOH A 157 514 514 HOH HOH . D 4 HOH A 158 515 515 HOH HOH . D 4 HOH A 159 516 516 HOH HOH . D 4 HOH A 160 517 517 HOH HOH . D 4 HOH A 161 518 518 HOH HOH . D 4 HOH A 162 519 519 HOH HOH . D 4 HOH A 163 520 520 HOH HOH . D 4 HOH A 164 521 521 HOH HOH . D 4 HOH A 165 522 522 HOH HOH . D 4 HOH A 166 523 523 HOH HOH . D 4 HOH A 167 524 524 HOH HOH . D 4 HOH A 168 525 525 HOH HOH . D 4 HOH A 169 526 526 HOH HOH . D 4 HOH A 170 527 527 HOH HOH . D 4 HOH A 171 528 528 HOH HOH . D 4 HOH A 172 529 529 HOH HOH . D 4 HOH A 173 530 530 HOH HOH . D 4 HOH A 174 531 531 HOH HOH . D 4 HOH A 175 532 532 HOH HOH . D 4 HOH A 176 533 533 HOH HOH . D 4 HOH A 177 534 534 HOH HOH . D 4 HOH A 178 535 535 HOH HOH . D 4 HOH A 179 536 536 HOH HOH . D 4 HOH A 180 537 537 HOH HOH . D 4 HOH A 181 538 538 HOH HOH . D 4 HOH A 182 539 539 HOH HOH . D 4 HOH A 183 540 540 HOH HOH . D 4 HOH A 184 541 541 HOH HOH . D 4 HOH A 185 542 542 HOH HOH . D 4 HOH A 186 543 543 HOH HOH . D 4 HOH A 187 544 544 HOH HOH . D 4 HOH A 188 545 545 HOH HOH . D 4 HOH A 189 546 546 HOH HOH . D 4 HOH A 190 547 547 HOH HOH . D 4 HOH A 191 548 548 HOH HOH . D 4 HOH A 192 549 549 HOH HOH . D 4 HOH A 193 550 550 HOH HOH . D 4 HOH A 194 551 551 HOH HOH . D 4 HOH A 195 552 552 HOH HOH . D 4 HOH A 196 553 553 HOH HOH . D 4 HOH A 197 554 554 HOH HOH . D 4 HOH A 198 555 555 HOH HOH . D 4 HOH A 199 556 556 HOH HOH . D 4 HOH A 200 557 557 HOH HOH . D 4 HOH A 201 558 558 HOH HOH . D 4 HOH A 202 559 559 HOH HOH . D 4 HOH A 203 560 560 HOH HOH . D 4 HOH A 204 561 561 HOH HOH . D 4 HOH A 205 562 562 HOH HOH . D 4 HOH A 206 563 563 HOH HOH . D 4 HOH A 207 564 564 HOH HOH . D 4 HOH A 208 565 565 HOH HOH . D 4 HOH A 209 566 566 HOH HOH . D 4 HOH A 210 567 567 HOH HOH . D 4 HOH A 211 568 568 HOH HOH . D 4 HOH A 212 569 569 HOH HOH . D 4 HOH A 213 570 570 HOH HOH . D 4 HOH A 214 571 571 HOH HOH . D 4 HOH A 215 572 572 HOH HOH . D 4 HOH A 216 573 573 HOH HOH . D 4 HOH A 217 574 574 HOH HOH . D 4 HOH A 218 575 575 HOH HOH . D 4 HOH A 219 576 576 HOH HOH . D 4 HOH A 220 577 577 HOH HOH . D 4 HOH A 221 578 578 HOH HOH . D 4 HOH A 222 579 579 HOH HOH . D 4 HOH A 223 580 580 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NVA . . . B 2 5.194 4.742 -23.325 1 16.35 ? N NVA 355 A 1 HETATM 2 C CA NVA . . . B 2 4.138 4.559 -22.342 1 16.76 ? CA NVA 355 A 1 HETATM 3 C CB NVA . . . B 2 3.053 3.682 -22.955 1 14.79 ? CB NVA 355 A 1 HETATM 4 C CG NVA . . . B 2 1.856 3.549 -22.024 1 17.47 ? CG NVA 355 A 1 HETATM 5 C CD NVA . . . B 2 0.832 2.557 -22.574 1 15.01 ? CD NVA 355 A 1 HETATM 6 C C NVA . . . B 2 4.713 3.913 -21.075 1 15.54 ? C NVA 355 A 1 HETATM 7 O O NVA . . . B 2 4.352 4.331 -19.973 1 15.25 ? O NVA 355 A 1 HETATM 8 O OXT NVA . . . B 2 5.547 3.026 -21.204 1 14.98 ? OXT NVA 355 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 8 #