data_1CAQ # _model_server_result.job_id WofSK3NnNymBoAKzfkOSkQ _model_server_result.datetime_utc '2024-12-26 22:24:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1caq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 1CAQ # _exptl.entry_id 1CAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 503.613 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(1H-INDOL-3-YL)-2-[4-(4-PHENYL-PIPERIDIN-1-YL)-BENZENESULFONYLAMINO]-PROPIONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CAQ _cell.length_a 69 _cell.length_b 69 _cell.length_c 77.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 77.8 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 25 A ASP 107 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc2 A OD1 ASP 25 A ASP 107 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.201 ? metalc ? metalc3 A O ASP 59 A ASP 141 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc4 A NE2 HIS 69 A HIS 151 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc5 A OD2 ASP 71 A ASP 153 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc6 A OD1 ASP 76 A ASP 158 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc7 A O GLY 77 A GLY 159 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc8 A O GLY 79 A GLY 161 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc9 A O VAL 81 A VAL 163 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc10 A NE2 HIS 84 A HIS 166 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc11 A O GLY 91 A GLY 173 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc12 A O ASN 93 A ASN 175 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc13 A OD1 ASP 95 A ASP 177 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc14 A ND1 HIS 97 A HIS 179 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc15 A OD2 ASP 99 A ASP 181 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc16 A O ASP 100 A ASP 182 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc17 A OD1 ASP 100 A ASP 182 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc18 A OE2 GLU 102 A GLU 184 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc19 A O GLU 102 A GLU 184 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc20 A NE2 HIS 119 A HIS 201 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc21 A NE2 HIS 123 A HIS 205 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc22 A NE2 HIS 129 A HIS 211 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc23 B ZN ZN . A ZN 301 1_555 H O4 DPS . A DPS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc24 F CA CA . A CA 304 1_555 I O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc25 F CA CA . A CA 304 1_555 I O HOH . A HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc26 G CA CA . A CA 305 1_555 I O HOH . A HOH 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? # _chem_comp.formula 'C28 H29 N3 O4 S' _chem_comp.formula_weight 503.613 _chem_comp.id DPS _chem_comp.mon_nstd_flag . _chem_comp.name '3-(1H-INDOL-3-YL)-2-[4-(4-PHENYL-PIPERIDIN-1-YL)-BENZENESULFONYLAMINO]-PROPIONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 DPS sing 70 n n N1 C15 DPS sing 71 n n N1 C18 DPS sing 72 n n C2 C3 DPS doub 73 n y C2 C1 DPS sing 74 n y C2 H2 DPS sing 75 n n C3 C4 DPS sing 76 n y C3 H3 DPS sing 77 n n C4 C5 DPS doub 78 n y C4 S DPS sing 79 n n C5 C6 DPS sing 80 n y C5 H5 DPS sing 81 n n N7 C23 DPS sing 82 n y N7 C27 DPS sing 83 n y N7 HN7 DPS sing 84 n n C8 N DPS sing 85 n n C8 C20 DPS sing 86 n n C8 C9 DPS sing 87 n n C8 H8 DPS sing 88 n n C10 C12 DPS doub 89 n y C10 C19 DPS sing 90 n y C10 H10 DPS sing 91 n n C11 C7 DPS sing 92 n n C11 C13 DPS sing 93 n n C11 C16 DPS sing 94 n n C11 H11 DPS sing 95 n n C12 C14 DPS sing 96 n y C12 H12 DPS sing 97 n n O1 S DPS doub 98 n n O2 S DPS doub 99 n n C1 C6 DPS doub 100 n y C6 H6 DPS sing 101 n n S N DPS sing 102 n n C7 C18 DPS sing 103 n n C7 H71 DPS sing 104 n n C7 H72 DPS sing 105 n n C13 C15 DPS sing 106 n n C13 H131 DPS sing 107 n n C13 H132 DPS sing 108 n n C15 H151 DPS sing 109 n n C15 H152 DPS sing 110 n n C18 H181 DPS sing 111 n n C18 H182 DPS sing 112 n n C14 C16 DPS doub 113 n y C14 H14 DPS sing 114 n n C16 C17 DPS sing 115 n y C17 C19 DPS doub 116 n y C17 H17 DPS sing 117 n n C19 H19 DPS sing 118 n n N HN DPS sing 119 n n C20 C28 DPS sing 120 n n C20 H201 DPS sing 121 n n C20 H202 DPS sing 122 n n C9 O3 DPS doub 123 n n C9 O4 DPS sing 124 n n O4 HO4 DPS sing 125 n n C21 C22 DPS doub 126 n y C21 C26 DPS sing 127 n y C21 H21 DPS sing 128 n n C22 C23 DPS sing 129 n y C22 H22 DPS sing 130 n n C23 C24 DPS doub 131 n y C24 C25 DPS sing 132 n y C24 C28 DPS sing 133 n y C25 C26 DPS doub 134 n y C25 H25 DPS sing 135 n n C26 H26 DPS sing 136 n n C27 C28 DPS doub 137 n y C27 H27 DPS sing 138 n n # _atom_sites.entry_id 1CAQ _atom_sites.fract_transf_matrix[1][1] 0.014493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 CA A 1 303 303 CA CA . E 4 SO4 A 1 501 501 SO4 SO4 . F 3 CA A 1 304 304 CA CA . G 3 CA A 1 305 305 CA CA . H 5 DPS A 1 502 502 DPS IN2 . I 6 HOH A 1 503 2 HOH HOH . I 6 HOH A 2 504 5 HOH HOH . I 6 HOH A 3 505 6 HOH HOH . I 6 HOH A 4 506 7 HOH HOH . I 6 HOH A 5 507 8 HOH HOH . I 6 HOH A 6 508 9 HOH HOH . I 6 HOH A 7 509 10 HOH HOH . I 6 HOH A 8 510 11 HOH HOH . I 6 HOH A 9 511 12 HOH HOH . I 6 HOH A 10 512 13 HOH HOH . I 6 HOH A 11 513 14 HOH HOH . I 6 HOH A 12 514 15 HOH HOH . I 6 HOH A 13 515 16 HOH HOH . I 6 HOH A 14 516 17 HOH HOH . I 6 HOH A 15 517 18 HOH HOH . I 6 HOH A 16 518 19 HOH HOH . I 6 HOH A 17 519 20 HOH HOH . I 6 HOH A 18 520 21 HOH HOH . I 6 HOH A 19 521 22 HOH HOH . I 6 HOH A 20 522 23 HOH HOH . I 6 HOH A 21 523 24 HOH HOH . I 6 HOH A 22 524 25 HOH HOH . I 6 HOH A 23 525 26 HOH HOH . I 6 HOH A 24 526 27 HOH HOH . I 6 HOH A 25 527 28 HOH HOH . I 6 HOH A 26 528 29 HOH HOH . I 6 HOH A 27 529 30 HOH HOH . I 6 HOH A 28 530 31 HOH HOH . I 6 HOH A 29 531 32 HOH HOH . I 6 HOH A 30 532 33 HOH HOH . I 6 HOH A 31 533 34 HOH HOH . I 6 HOH A 32 534 35 HOH HOH . I 6 HOH A 33 535 36 HOH HOH . I 6 HOH A 34 536 37 HOH HOH . I 6 HOH A 35 537 38 HOH HOH . I 6 HOH A 36 538 39 HOH HOH . I 6 HOH A 37 539 40 HOH HOH . I 6 HOH A 38 540 41 HOH HOH . I 6 HOH A 39 541 42 HOH HOH . I 6 HOH A 40 542 43 HOH HOH . I 6 HOH A 41 543 44 HOH HOH . I 6 HOH A 42 544 45 HOH HOH . I 6 HOH A 43 545 46 HOH HOH . I 6 HOH A 44 546 47 HOH HOH . I 6 HOH A 45 547 48 HOH HOH . I 6 HOH A 46 548 49 HOH HOH . I 6 HOH A 47 549 50 HOH HOH . I 6 HOH A 48 550 51 HOH HOH . I 6 HOH A 49 551 52 HOH HOH . I 6 HOH A 50 552 53 HOH HOH . I 6 HOH A 51 553 54 HOH HOH . I 6 HOH A 52 554 55 HOH HOH . I 6 HOH A 53 555 56 HOH HOH . I 6 HOH A 54 556 57 HOH HOH . I 6 HOH A 55 557 58 HOH HOH . I 6 HOH A 56 558 59 HOH HOH . I 6 HOH A 57 559 60 HOH HOH . I 6 HOH A 58 560 61 HOH HOH . I 6 HOH A 59 561 62 HOH HOH . I 6 HOH A 60 562 63 HOH HOH . I 6 HOH A 61 563 64 HOH HOH . I 6 HOH A 62 564 65 HOH HOH . I 6 HOH A 63 565 66 HOH HOH . I 6 HOH A 64 566 67 HOH HOH . I 6 HOH A 65 567 68 HOH HOH . I 6 HOH A 66 568 69 HOH HOH . I 6 HOH A 67 569 70 HOH HOH . I 6 HOH A 68 570 71 HOH HOH . I 6 HOH A 69 571 72 HOH HOH . I 6 HOH A 70 572 73 HOH HOH . I 6 HOH A 71 573 74 HOH HOH . I 6 HOH A 72 574 304 HOH CA . I 6 HOH A 73 575 304 HOH CA . I 6 HOH A 74 576 305 HOH CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DPS . . . H 5 16.989 9.006 17.952 1 13.82 ? N1 DPS 502 A 1 HETATM 2 C C2 DPS . . . H 5 16.24 8.621 20.269 1 14.7 ? C2 DPS 502 A 1 HETATM 3 C C3 DPS . . . H 5 15.782 7.766 21.249 1 14.49 ? C3 DPS 502 A 1 HETATM 4 C C4 DPS . . . H 5 15.375 6.487 20.909 1 13.87 ? C4 DPS 502 A 1 HETATM 5 C C5 DPS . . . H 5 15.3 6.083 19.589 1 13.54 ? C5 DPS 502 A 1 HETATM 6 N N7 DPS . . . H 5 8.612 2.983 20.413 1 19.36 ? N7 DPS 502 A 1 HETATM 7 C C8 DPS . . . H 5 12.368 4.977 21.83 1 14.41 ? C8 DPS 502 A 1 HETATM 8 C C10 DPS . . . H 5 20.74 12.932 13.294 1 22.1 ? C10 DPS 502 A 1 HETATM 9 C C11 DPS . . . H 5 18.168 10.781 15.997 1 17.3 ? C11 DPS 502 A 1 HETATM 10 C C12 DPS . . . H 5 21.221 12.532 14.534 1 20.97 ? C12 DPS 502 A 1 HETATM 11 O O1 DPS . . . H 5 15.778 5.756 23.343 1 12.69 ? O1 DPS 502 A 1 HETATM 12 O O2 DPS . . . H 5 15.178 4.047 21.673 1 14.64 ? O2 DPS 502 A 1 HETATM 13 C C1 DPS . . . H 5 16.31 8.196 18.935 1 14.35 ? C1 DPS 502 A 1 HETATM 14 C C6 DPS . . . H 5 15.783 6.941 18.61 1 13.78 ? C6 DPS 502 A 1 HETATM 15 S S DPS . . . H 5 15.017 5.35 22.194 1 13.52 ? S DPS 502 A 1 HETATM 16 C C7 DPS . . . H 5 17.967 9.309 15.652 1 16.3 ? C7 DPS 502 A 1 HETATM 17 C C13 DPS . . . H 5 18.583 10.932 17.458 1 15.37 ? C13 DPS 502 A 1 HETATM 18 C C15 DPS . . . H 5 17.566 10.293 18.387 1 12.42 ? C15 DPS 502 A 1 HETATM 19 C C18 DPS . . . H 5 16.854 8.712 16.51 1 12.89 ? C18 DPS 502 A 1 HETATM 20 C C14 DPS . . . H 5 20.415 11.8 15.405 1 18.73 ? C14 DPS 502 A 1 HETATM 21 C C16 DPS . . . H 5 19.111 11.466 15.047 1 19.55 ? C16 DPS 502 A 1 HETATM 22 C C17 DPS . . . H 5 18.644 11.836 13.782 1 20.52 ? C17 DPS 502 A 1 HETATM 23 C C19 DPS . . . H 5 19.45 12.571 12.912 1 21.99 ? C19 DPS 502 A 1 HETATM 24 N N DPS . . . H 5 13.406 5.488 22.701 1 12.35 ? N DPS 502 A 1 HETATM 25 C C20 DPS . . . H 5 11.225 4.378 22.66 1 15.82 ? C20 DPS 502 A 1 HETATM 26 C C9 DPS . . . H 5 11.886 6.048 20.865 1 12.82 ? C9 DPS 502 A 1 HETATM 27 O O3 DPS . . . H 5 11.832 7.299 21.382 1 11.61 ? O3 DPS 502 A 1 HETATM 28 O O4 DPS . . . H 5 11.567 5.764 19.759 1 12.26 ? O4 DPS 502 A 1 HETATM 29 C C21 DPS . . . H 5 6.564 6.145 20.661 1 21.83 ? C21 DPS 502 A 1 HETATM 30 C C22 DPS . . . H 5 6.865 4.835 20.256 1 21.54 ? C22 DPS 502 A 1 HETATM 31 C C23 DPS . . . H 5 8.034 4.235 20.657 1 20.78 ? C23 DPS 502 A 1 HETATM 32 C C24 DPS . . . H 5 8.896 4.935 21.539 1 20.24 ? C24 DPS 502 A 1 HETATM 33 C C25 DPS . . . H 5 8.599 6.219 21.938 1 20.15 ? C25 DPS 502 A 1 HETATM 34 C C26 DPS . . . H 5 7.423 6.833 21.515 1 21.51 ? C26 DPS 502 A 1 HETATM 35 C C27 DPS . . . H 5 9.799 2.881 21.068 1 19.35 ? C27 DPS 502 A 1 HETATM 36 C C28 DPS . . . H 5 10.032 4.064 21.78 1 19.37 ? C28 DPS 502 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #