data_1CBS # _model_server_result.job_id GhITRCa_WKhUxD4zlPXL2w _model_server_result.datetime_utc '2024-11-21 22:25:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 1CBS # _exptl.entry_id 1CBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RETINOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CBS _cell.length_a 45.65 _cell.length_b 47.56 _cell.length_c 77.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id REA _chem_comp.mon_nstd_flag . _chem_comp.name 'RETINOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 REA sing 256 n n C1 C6 REA sing 257 n n C1 C16 REA sing 258 n n C1 C17 REA sing 259 n n C2 C3 REA sing 260 n n C2 H21 REA sing 261 n n C2 H22 REA sing 262 n n C3 C4 REA sing 263 n n C3 H31 REA sing 264 n n C3 H32 REA sing 265 n n C4 C5 REA sing 266 n n C4 H41 REA sing 267 n n C4 H42 REA sing 268 n n C5 C6 REA doub 269 n n C5 C18 REA sing 270 n n C6 C7 REA sing 271 n n C7 C8 REA doub 272 e n C7 H7 REA sing 273 n n C8 C9 REA sing 274 n n C8 H8 REA sing 275 n n C9 C10 REA doub 276 e n C9 C19 REA sing 277 n n C10 C11 REA sing 278 n n C10 H10 REA sing 279 n n C11 C12 REA doub 280 e n C11 H11 REA sing 281 n n C12 C13 REA sing 282 n n C12 H12 REA sing 283 n n C13 C14 REA doub 284 e n C13 C20 REA sing 285 n n C14 C15 REA sing 286 n n C14 H14 REA sing 287 n n C15 O1 REA doub 288 n n C15 O2 REA sing 289 n n C16 H161 REA sing 290 n n C16 H162 REA sing 291 n n C16 H163 REA sing 292 n n C17 H171 REA sing 293 n n C17 H172 REA sing 294 n n C17 H173 REA sing 295 n n C18 H181 REA sing 296 n n C18 H182 REA sing 297 n n C18 H183 REA sing 298 n n C19 H191 REA sing 299 n n C19 H192 REA sing 300 n n C19 H193 REA sing 301 n n C20 H201 REA sing 302 n n C20 H202 REA sing 303 n n C20 H203 REA sing 304 n n O2 HO2 REA sing 305 n n # _atom_sites.entry_id 1CBS _atom_sites.fract_transf_matrix[1][1] 0.021906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 REA A 1 200 200 REA REA . C 3 HOH A 1 300 300 HOH HOH . C 3 HOH A 2 301 301 HOH HOH . C 3 HOH A 3 302 302 HOH HOH . C 3 HOH A 4 303 303 HOH HOH . C 3 HOH A 5 304 304 HOH HOH . C 3 HOH A 6 305 305 HOH HOH . C 3 HOH A 7 306 306 HOH HOH . C 3 HOH A 8 307 307 HOH HOH . C 3 HOH A 9 308 308 HOH HOH . C 3 HOH A 10 309 309 HOH HOH . C 3 HOH A 11 310 310 HOH HOH . C 3 HOH A 12 311 311 HOH HOH . C 3 HOH A 13 312 312 HOH HOH . C 3 HOH A 14 313 313 HOH HOH . C 3 HOH A 15 314 314 HOH HOH . C 3 HOH A 16 315 315 HOH HOH . C 3 HOH A 17 316 316 HOH HOH . C 3 HOH A 18 317 317 HOH HOH . C 3 HOH A 19 318 318 HOH HOH . C 3 HOH A 20 319 319 HOH HOH . C 3 HOH A 21 320 320 HOH HOH . C 3 HOH A 22 321 321 HOH HOH . C 3 HOH A 23 322 322 HOH HOH . C 3 HOH A 24 323 323 HOH HOH . C 3 HOH A 25 324 324 HOH HOH . C 3 HOH A 26 325 325 HOH HOH . C 3 HOH A 27 326 326 HOH HOH . C 3 HOH A 28 327 327 HOH HOH . C 3 HOH A 29 328 328 HOH HOH . C 3 HOH A 30 329 329 HOH HOH . C 3 HOH A 31 330 330 HOH HOH . C 3 HOH A 32 331 331 HOH HOH . C 3 HOH A 33 332 332 HOH HOH . C 3 HOH A 34 333 333 HOH HOH . C 3 HOH A 35 334 334 HOH HOH . C 3 HOH A 36 335 335 HOH HOH . C 3 HOH A 37 336 336 HOH HOH . C 3 HOH A 38 337 337 HOH HOH . C 3 HOH A 39 338 338 HOH HOH . C 3 HOH A 40 339 339 HOH HOH . C 3 HOH A 41 340 340 HOH HOH . C 3 HOH A 42 341 341 HOH HOH . C 3 HOH A 43 342 342 HOH HOH . C 3 HOH A 44 343 343 HOH HOH . C 3 HOH A 45 344 344 HOH HOH . C 3 HOH A 46 345 345 HOH HOH . C 3 HOH A 47 346 346 HOH HOH . C 3 HOH A 48 347 347 HOH HOH . C 3 HOH A 49 348 348 HOH HOH . C 3 HOH A 50 349 349 HOH HOH . C 3 HOH A 51 350 350 HOH HOH . C 3 HOH A 52 351 351 HOH HOH . C 3 HOH A 53 352 352 HOH HOH . C 3 HOH A 54 353 353 HOH HOH . C 3 HOH A 55 354 354 HOH HOH . C 3 HOH A 56 355 355 HOH HOH . C 3 HOH A 57 356 356 HOH HOH . C 3 HOH A 58 357 357 HOH HOH . C 3 HOH A 59 358 358 HOH HOH . C 3 HOH A 60 359 359 HOH HOH . C 3 HOH A 61 360 360 HOH HOH . C 3 HOH A 62 361 361 HOH HOH . C 3 HOH A 63 362 362 HOH HOH . C 3 HOH A 64 363 363 HOH HOH . C 3 HOH A 65 364 364 HOH HOH . C 3 HOH A 66 365 365 HOH HOH . C 3 HOH A 67 366 366 HOH HOH . C 3 HOH A 68 367 367 HOH HOH . C 3 HOH A 69 368 368 HOH HOH . C 3 HOH A 70 369 369 HOH HOH . C 3 HOH A 71 370 370 HOH HOH . C 3 HOH A 72 371 371 HOH HOH . C 3 HOH A 73 372 372 HOH HOH . C 3 HOH A 74 373 373 HOH HOH . C 3 HOH A 75 374 374 HOH HOH . C 3 HOH A 76 375 375 HOH HOH . C 3 HOH A 77 376 376 HOH HOH . C 3 HOH A 78 377 377 HOH HOH . C 3 HOH A 79 378 378 HOH HOH . C 3 HOH A 80 379 379 HOH HOH . C 3 HOH A 81 380 380 HOH HOH . C 3 HOH A 82 381 381 HOH HOH . C 3 HOH A 83 382 382 HOH HOH . C 3 HOH A 84 383 383 HOH HOH . C 3 HOH A 85 384 384 HOH HOH . C 3 HOH A 86 385 385 HOH HOH . C 3 HOH A 87 386 386 HOH HOH . C 3 HOH A 88 387 387 HOH HOH . C 3 HOH A 89 388 388 HOH HOH . C 3 HOH A 90 389 389 HOH HOH . C 3 HOH A 91 390 390 HOH HOH . C 3 HOH A 92 391 391 HOH HOH . C 3 HOH A 93 392 392 HOH HOH . C 3 HOH A 94 393 393 HOH HOH . C 3 HOH A 95 394 394 HOH HOH . C 3 HOH A 96 395 395 HOH HOH . C 3 HOH A 97 396 396 HOH HOH . C 3 HOH A 98 397 397 HOH HOH . C 3 HOH A 99 398 398 HOH HOH . C 3 HOH A 100 399 399 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 REA . . . B 2 21.972 29.831 16.739 1 15.25 ? C1 REA 200 A 1 HETATM 2 C C2 REA . . . B 2 20.921 30.524 15.841 1 15.61 ? C2 REA 200 A 1 HETATM 3 C C3 REA . . . B 2 20.245 29.635 14.848 1 16.19 ? C3 REA 200 A 1 HETATM 4 C C4 REA . . . B 2 19.555 28.479 15.488 1 14.59 ? C4 REA 200 A 1 HETATM 5 C C5 REA . . . B 2 20.389 27.812 16.587 1 14.1 ? C5 REA 200 A 1 HETATM 6 C C6 REA . . . B 2 21.425 28.446 17.218 1 14.42 ? C6 REA 200 A 1 HETATM 7 C C7 REA . . . B 2 22.242 27.851 18.297 1 13.89 ? C7 REA 200 A 1 HETATM 8 C C8 REA . . . B 2 21.868 26.977 19.24 1 11.86 ? C8 REA 200 A 1 HETATM 9 C C9 REA . . . B 2 22.705 26.434 20.286 1 10.87 ? C9 REA 200 A 1 HETATM 10 C C10 REA . . . B 2 22.159 25.536 21.131 1 9.19 ? C10 REA 200 A 1 HETATM 11 C C11 REA . . . B 2 22.875 24.924 22.234 1 10.35 ? C11 REA 200 A 1 HETATM 12 C C12 REA . . . B 2 22.237 24.026 22.99 1 10.53 ? C12 REA 200 A 1 HETATM 13 C C13 REA . . . B 2 22.856 23.377 24.125 1 10.91 ? C13 REA 200 A 1 HETATM 14 C C14 REA . . . B 2 22.135 22.473 24.834 1 11.88 ? C14 REA 200 A 1 HETATM 15 C C15 REA . . . B 2 22.563 21.71 26.016 1 14.86 ? C15 REA 200 A 1 HETATM 16 C C16 REA . . . B 2 22.238 30.737 17.948 1 15.47 ? C16 REA 200 A 1 HETATM 17 C C17 REA . . . B 2 23.292 29.62 15.948 1 13.42 ? C17 REA 200 A 1 HETATM 18 C C18 REA . . . B 2 19.791 26.449 16.947 1 12.61 ? C18 REA 200 A 1 HETATM 19 C C19 REA . . . B 2 24.181 26.841 20.385 1 10.08 ? C19 REA 200 A 1 HETATM 20 C C20 REA . . . B 2 24.303 23.747 24.489 1 10.1 ? C20 REA 200 A 1 HETATM 21 O O1 REA . . . B 2 23.64 21.075 25.978 1 13.29 ? O1 REA 200 A 1 HETATM 22 O O2 REA . . . B 2 21.84 21.712 27.037 1 10.99 ? O2 REA 200 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #