data_1CC5 # _model_server_result.job_id x8W5SKQ7B98ZOhd8L9pHfQ _model_server_result.datetime_utc '2025-03-05 04:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1CC5 # _exptl.entry_id 1CC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.3 _cell.angle_gamma 90 _cell.entry_id 1CC5 _cell.length_a 45.73 _cell.length_b 37.56 _cell.length_c 42.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -15.45634 0 39.643462 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 69 1_555 A SG CYS 68 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? covale ? covale1 B CAB HEM . A HEM 1 1_555 A SG CYS 15 A CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? covale ? covale2 B CAC HEM . A HEM 1 1_555 A SG CYS 18 A CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc1 B FE HEM . A HEM 1 1_555 A NE2 HIS 19 A HIS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 B FE HEM . A HEM 1 1_555 A SD MET 59 A MET 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1CC5 _atom_sites.fract_transf_matrix[1][1] 0.021867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008526 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HEM _pdbx_nonpoly_scheme.auth_mon_id HEM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -16.657 -4.44 16.328 1 8.44 ? CHA HEM 1 A 1 HETATM 2 C CHB HEM . . . B 2 -15.35 -2.461 12.18 1 8.18 ? CHB HEM 1 A 1 HETATM 3 C CHC HEM . . . B 2 -11.443 -5.174 12.272 1 8.06 ? CHC HEM 1 A 1 HETATM 4 C CHD HEM . . . B 2 -12.226 -6.429 16.758 1 7.49 ? CHD HEM 1 A 1 HETATM 5 C C1A HEM . . . B 2 -16.681 -3.722 15.187 1 8.65 ? C1A HEM 1 A 1 HETATM 6 C C2A HEM . . . B 2 -17.784 -2.91 14.735 1 8.77 ? C2A HEM 1 A 1 HETATM 7 C C3A HEM . . . B 2 -17.424 -2.367 13.584 1 8.55 ? C3A HEM 1 A 1 HETATM 8 C C4A HEM . . . B 2 -16.072 -2.801 13.302 1 8.27 ? C4A HEM 1 A 1 HETATM 9 C CMA HEM . . . B 2 -18.207 -1.449 12.758 1 8.22 ? CMA HEM 1 A 1 HETATM 10 C CAA HEM . . . B 2 -19.079 -2.728 15.472 1 9.07 ? CAA HEM 1 A 1 HETATM 11 C CBA HEM . . . B 2 -18.831 -1.57 16.433 1 8.86 ? CBA HEM 1 A 1 HETATM 12 C CGA HEM . . . B 2 -20.149 -1.056 17.041 1 7.9 ? CGA HEM 1 A 1 HETATM 13 O O1A HEM . . . B 2 -20.89 -1.83 17.642 1 7.92 ? O1A HEM 1 A 1 HETATM 14 O O2A HEM . . . B 2 -20.374 0.129 16.83 1 8.35 ? O2A HEM 1 A 1 HETATM 15 C C1B HEM . . . B 2 -14.175 -3.012 11.814 1 8.45 ? C1B HEM 1 A 1 HETATM 16 C C2B HEM . . . B 2 -13.442 -2.7 10.6 1 8.8 ? C2B HEM 1 A 1 HETATM 17 C C3B HEM . . . B 2 -12.298 -3.473 10.597 1 8.44 ? C3B HEM 1 A 1 HETATM 18 C C4B HEM . . . B 2 -12.386 -4.273 11.84 1 8.14 ? C4B HEM 1 A 1 HETATM 19 C CMB HEM . . . B 2 -13.874 -1.707 9.554 1 8.96 ? CMB HEM 1 A 1 HETATM 20 C CAB HEM . . . B 2 -11.17 -3.532 9.479 1 7.81 ? CAB HEM 1 A 1 HETATM 21 C CBB HEM . . . B 2 -10.624 -2.138 9.143 1 7.77 ? CBB HEM 1 A 1 HETATM 22 C C1C HEM . . . B 2 -11.258 -5.654 13.536 1 8.07 ? C1C HEM 1 A 1 HETATM 23 C C2C HEM . . . B 2 -10.051 -6.313 13.984 1 8.23 ? C2C HEM 1 A 1 HETATM 24 C C3C HEM . . . B 2 -10.232 -6.653 15.281 1 8.28 ? C3C HEM 1 A 1 HETATM 25 C C4C HEM . . . B 2 -11.591 -6.262 15.607 1 7.89 ? C4C HEM 1 A 1 HETATM 26 C CMC HEM . . . B 2 -8.764 -6.573 13.171 1 8.65 ? CMC HEM 1 A 1 HETATM 27 C CAC HEM . . . B 2 -9.193 -7.429 16.217 1 8.1 ? CAC HEM 1 A 1 HETATM 28 C CBC HEM . . . B 2 -7.922 -6.739 16.696 1 8.37 ? CBC HEM 1 A 1 HETATM 29 C C1D HEM . . . B 2 -13.535 -6.032 16.916 1 8.04 ? C1D HEM 1 A 1 HETATM 30 C C2D HEM . . . B 2 -14.201 -6.344 18.1 1 8.77 ? C2D HEM 1 A 1 HETATM 31 C C3D HEM . . . B 2 -15.455 -5.816 18.026 1 8.59 ? C3D HEM 1 A 1 HETATM 32 C C4D HEM . . . B 2 -15.569 -5.128 16.79 1 8.05 ? C4D HEM 1 A 1 HETATM 33 C CMD HEM . . . B 2 -13.55 -7.169 19.224 1 9.01 ? CMD HEM 1 A 1 HETATM 34 C CAD HEM . . . B 2 -16.467 -5.899 19.1 1 9.09 ? CAD HEM 1 A 1 HETATM 35 C CBD HEM . . . B 2 -16.023 -4.847 20.124 1 9.87 ? CBD HEM 1 A 1 HETATM 36 C CGD HEM . . . B 2 -17.228 -4.561 21.003 1 10.5 ? CGD HEM 1 A 1 HETATM 37 O O1D HEM . . . B 2 -17.147 -4.783 22.247 1 10.41 ? O1D HEM 1 A 1 HETATM 38 O O2D HEM . . . B 2 -18.179 -4.173 20.286 1 11.59 ? O2D HEM 1 A 1 HETATM 39 N NA HEM . . . B 2 -15.628 -3.66 14.294 1 8.47 ? NA HEM 1 A 1 HETATM 40 N NB HEM . . . B 2 -13.503 -3.952 12.505 1 8.3 ? NB HEM 1 A 1 HETATM 41 N NC HEM . . . B 2 -12.138 -5.644 14.537 1 8.25 ? NC HEM 1 A 1 HETATM 42 N ND HEM . . . B 2 -14.357 -5.295 16.126 1 7.93 ? ND HEM 1 A 1 HETATM 43 FE FE HEM . . . B 2 -13.839 -4.656 14.325 1 7.49 ? FE HEM 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 43 #