data_1CCB # _model_server_result.job_id ZGCxItkrOeABAm8L8YTwDg _model_server_result.datetime_utc '2025-03-04 23:13:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ccb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":295}' # _entry.id 1CCB # _exptl.entry_id 1CCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CCB _cell.length_a 105.2 _cell.length_b 74.3 _cell.length_c 45.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 178 A HIS 175 1_555 B FE HEM . A HEM 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 B FE HEM . A HEM 295 1_555 C O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1CCB _atom_sites.fract_transf_matrix[1][1] 0.009506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 295 1 HEM HEM . C 3 HOH A 1 300 300 HOH HOH . C 3 HOH A 2 301 301 HOH HOH . C 3 HOH A 3 302 302 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 327 327 HOH HOH . C 3 HOH A 28 328 328 HOH HOH . C 3 HOH A 29 329 329 HOH HOH . C 3 HOH A 30 330 330 HOH HOH . C 3 HOH A 31 331 331 HOH HOH . C 3 HOH A 32 332 332 HOH HOH . C 3 HOH A 33 333 333 HOH HOH . C 3 HOH A 34 334 334 HOH HOH . C 3 HOH A 35 335 335 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 343 343 HOH HOH . C 3 HOH A 44 344 344 HOH HOH . C 3 HOH A 45 345 345 HOH HOH . C 3 HOH A 46 346 346 HOH HOH . C 3 HOH A 47 347 347 HOH HOH . C 3 HOH A 48 348 348 HOH HOH . C 3 HOH A 49 349 349 HOH HOH . C 3 HOH A 50 350 350 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -5.365 53.947 112.88 1 16.66 ? CHA HEM 295 A 1 HETATM 2 C CHB HEM . . . B 2 -7.472 57.98 114.373 1 18.19 ? CHB HEM 295 A 1 HETATM 3 C CHC HEM . . . B 2 -5.956 60.092 110.387 1 14.35 ? CHC HEM 295 A 1 HETATM 4 C CHD HEM . . . B 2 -3.486 56.198 109.128 1 19.38 ? CHD HEM 295 A 1 HETATM 5 C C1A HEM . . . B 2 -6.074 54.86 113.686 1 20.25 ? C1A HEM 295 A 1 HETATM 6 C C2A HEM . . . B 2 -6.619 54.562 114.913 1 18.81 ? C2A HEM 295 A 1 HETATM 7 C C3A HEM . . . B 2 -7.267 55.726 115.337 1 17.03 ? C3A HEM 295 A 1 HETATM 8 C C4A HEM . . . B 2 -7.016 56.661 114.356 1 19.01 ? C4A HEM 295 A 1 HETATM 9 C CMA HEM . . . B 2 -8.121 55.953 116.575 1 14.18 ? CMA HEM 295 A 1 HETATM 10 C CAA HEM . . . B 2 -6.572 53.197 115.57 1 18.83 ? CAA HEM 295 A 1 HETATM 11 C CBA HEM . . . B 2 -5.386 52.979 116.467 1 20.91 ? CBA HEM 295 A 1 HETATM 12 C CGA HEM . . . B 2 -5.38 51.633 117.181 1 25.48 ? CGA HEM 295 A 1 HETATM 13 O O1A HEM . . . B 2 -6.302 51.34 117.938 1 24.43 ? O1A HEM 295 A 1 HETATM 14 O O2A HEM . . . B 2 -4.438 50.859 117.026 1 24.78 ? O2A HEM 295 A 1 HETATM 15 C C1B HEM . . . B 2 -7.332 58.951 113.374 1 19.87 ? C1B HEM 295 A 1 HETATM 16 C C2B HEM . . . B 2 -7.976 60.19 113.362 1 21.05 ? C2B HEM 295 A 1 HETATM 17 C C3B HEM . . . B 2 -7.511 60.804 112.194 1 20.49 ? C3B HEM 295 A 1 HETATM 18 C C4B HEM . . . B 2 -6.67 59.879 111.571 1 16.82 ? C4B HEM 295 A 1 HETATM 19 C CMB HEM . . . B 2 -9.009 60.663 114.385 1 17.87 ? CMB HEM 295 A 1 HETATM 20 C CAB HEM . . . B 2 -7.788 62.06 111.648 1 17.25 ? CAB HEM 295 A 1 HETATM 21 C CBB HEM . . . B 2 -8.805 62.998 112.036 1 14.22 ? CBB HEM 295 A 1 HETATM 22 C C1C HEM . . . B 2 -5.059 59.277 109.699 1 19.59 ? C1C HEM 295 A 1 HETATM 23 C C2C HEM . . . B 2 -4.319 59.673 108.591 1 19.77 ? C2C HEM 295 A 1 HETATM 24 C C3C HEM . . . B 2 -3.501 58.552 108.325 1 20.16 ? C3C HEM 295 A 1 HETATM 25 C C4C HEM . . . B 2 -3.915 57.542 109.185 1 24.43 ? C4C HEM 295 A 1 HETATM 26 C CMC HEM . . . B 2 -4.383 61.074 107.924 1 17.54 ? CMC HEM 295 A 1 HETATM 27 C CAC HEM . . . B 2 -2.484 58.34 107.393 1 18.56 ? CAC HEM 295 A 1 HETATM 28 C CBC HEM . . . B 2 -2.102 59.21 106.28 1 24.57 ? CBC HEM 295 A 1 HETATM 29 C C1D HEM . . . B 2 -3.861 55.155 109.962 1 17.21 ? C1D HEM 295 A 1 HETATM 30 C C2D HEM . . . B 2 -3.583 53.814 109.763 1 16.42 ? C2D HEM 295 A 1 HETATM 31 C C3D HEM . . . B 2 -4.12 53.164 110.864 1 17.71 ? C3D HEM 295 A 1 HETATM 32 C C4D HEM . . . B 2 -4.729 54.145 111.641 1 16.4 ? C4D HEM 295 A 1 HETATM 33 C CMD HEM . . . B 2 -3.014 53.122 108.547 1 7.38 ? CMD HEM 295 A 1 HETATM 34 C CAD HEM . . . B 2 -4.05 51.661 111.135 1 16.7 ? CAD HEM 295 A 1 HETATM 35 C CBD HEM . . . B 2 -2.943 51.359 112.11 1 9.28 ? CBD HEM 295 A 1 HETATM 36 C CGD HEM . . . B 2 -2.849 49.937 112.613 1 12.73 ? CGD HEM 295 A 1 HETATM 37 O O1D HEM . . . B 2 -2.176 49.732 113.601 1 18.55 ? O1D HEM 295 A 1 HETATM 38 O O2D HEM . . . B 2 -3.415 49.012 112.054 1 10.09 ? O2D HEM 295 A 1 HETATM 39 N NA HEM . . . B 2 -6.311 56.137 113.363 1 15.73 ? NA HEM 295 A 1 HETATM 40 N NB HEM . . . B 2 -6.619 58.757 112.263 1 18.85 ? NB HEM 295 A 1 HETATM 41 N NC HEM . . . B 2 -4.791 58.018 110.068 1 19.66 ? NC HEM 295 A 1 HETATM 42 N ND HEM . . . B 2 -4.629 55.335 111.047 1 20.71 ? ND HEM 295 A 1 HETATM 43 FE FE HEM . . . B 2 -5.685 57.027 111.629 1 16.89 ? FE HEM 295 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #